Wall clock time and date at job start Tue Mar 31 2020 18:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47151 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47064 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.46911 * 149.99982 * 3 2 1 7 7 C 1.38811 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99928 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46964 * 35.00037 * 10 9 7 12 12 C 1.52995 * 109.46999 * 155.00247 * 10 9 7 13 13 C 1.53004 * 109.47171 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47056 * 299.99786 * 13 12 10 15 15 H 1.08999 * 109.47307 * 300.00557 * 14 13 12 16 16 N 1.46491 * 109.46982 * 179.97438 * 14 13 12 17 17 C 1.34783 * 119.99946 * 155.00432 * 16 14 13 18 18 O 1.21616 * 119.99356 * 359.97438 * 17 16 14 19 19 C 1.47374 * 120.00404 * 180.02562 * 17 16 14 20 20 C 1.47029 * 127.19007 * 0.02562 * 19 17 16 21 21 C 1.34177 * 105.95271 * 180.22912 * 20 19 17 22 22 O 1.34222 * 109.12302 * 359.62455 * 21 20 19 23 23 C 1.33647 * 110.90811 * 0.39552 * 22 21 20 24 24 C 1.50699 * 125.80169 * 179.74016 * 23 22 21 25 25 C 1.50697 * 109.47513 * 270.02644 * 24 23 22 26 26 N 1.34769 * 120.00159 * 179.97438 * 25 24 23 27 27 O 1.21284 * 119.99832 * 0.02562 * 25 24 23 28 28 C 1.53008 * 109.46538 * 59.99944 * 14 13 12 29 29 C 1.52994 * 109.47114 * 299.99855 * 28 14 13 30 30 H 0.96992 * 120.00155 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99909 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47434 * 60.00078 * 12 10 9 33 33 H 1.08996 * 109.47544 * 300.00274 * 12 10 9 34 34 H 1.08996 * 109.47110 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.46971 * 59.99680 * 13 12 10 36 36 H 0.97001 * 120.00536 * 335.00405 * 16 14 13 37 37 H 1.08002 * 127.02021 * 359.95707 * 20 19 17 38 38 H 1.08002 * 125.43865 * 179.74455 * 21 20 19 39 39 H 1.09002 * 109.46790 * 30.02952 * 24 23 22 40 40 H 1.08996 * 109.47066 * 150.01883 * 24 23 22 41 41 H 0.97003 * 120.00131 * 0.02562 * 26 25 24 42 42 H 0.97001 * 120.00290 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.46821 * 60.00315 * 28 14 13 44 44 H 1.09001 * 109.46503 * 180.02562 * 28 14 13 45 45 H 1.08999 * 109.47652 * 299.99951 * 29 28 14 46 46 H 1.09009 * 109.46895 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6090 13 6 1.9463 -6.0770 0.6096 14 6 2.3107 -6.4561 -0.8272 15 1 1.4002 -6.5626 -1.4170 16 7 3.0439 -7.7244 -0.8266 17 6 3.0359 -8.5080 -1.9232 18 8 2.4195 -8.1623 -2.9130 19 6 3.7730 -9.7841 -1.9224 20 6 4.5634 -10.3533 -0.8211 21 6 5.0496 -11.5170 -1.2790 22 8 4.6245 -11.7061 -2.5380 23 6 3.8645 -10.6842 -2.9434 24 6 3.2189 -10.5489 -4.2983 25 6 4.1604 -9.8364 -5.2347 26 7 3.7934 -9.6023 -6.5101 27 8 5.2489 -9.4745 -4.8407 28 6 3.1879 -5.3607 -1.4368 29 6 2.4226 -4.0359 -1.4373 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 0.2703 -4.8584 0.0196 33 1 0.9217 -4.4823 1.6327 34 1 1.3212 -6.8574 1.0435 35 1 2.8567 -5.9704 1.1993 36 1 3.5352 -8.0002 -0.0370 37 1 4.7239 -9.9206 0.1554 38 1 5.6806 -12.1943 -0.7227 39 1 2.9934 -11.5393 -4.6938 40 1 2.2962 -9.9762 -4.2055 41 1 2.9230 -9.8921 -6.8253 42 1 4.3993 -9.1434 -7.1127 43 1 4.0984 -5.2542 -0.8470 44 1 3.4472 -5.6305 -2.4605 45 1 1.5122 -4.1423 -2.0271 46 1 3.0475 -3.2555 -1.8720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034719432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:09 Heat of formation + Delta-G solvation = -65.589698 kcal Electronic energy + Delta-G solvation = -28731.639795 eV Core-core repulsion = 24622.341879 eV Total energy + Delta-G solvation = -4109.297917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.87844 -39.81588 -39.55335 -37.85462 -34.84659 -33.99996 -33.44135 -32.86929 -32.20346 -30.57094 -30.35789 -28.09126 -27.13116 -24.11732 -23.15110 -22.28376 -21.89633 -21.25722 -20.50927 -20.06886 -19.33125 -18.33438 -17.58061 -17.23049 -16.97352 -16.17272 -16.10191 -15.95118 -15.44111 -15.09309 -14.73434 -14.67557 -14.01252 -13.96911 -13.72512 -13.54321 -13.47997 -13.18597 -13.12763 -12.97669 -12.49216 -12.07554 -11.98025 -11.76665 -11.39599 -11.01125 -10.79712 -10.72626 -10.63625 -10.38215 -10.15722 -10.08931 -10.04397 -9.99504 -9.95696 -9.71990 -9.55542 -9.02260 -8.84293 -8.78201 -6.90666 -5.72589 -3.00792 1.08485 1.80177 2.34208 2.43912 3.16107 3.18952 3.41966 3.46206 3.51388 3.52757 4.07880 4.51526 4.55114 4.61733 4.63503 4.75282 4.93930 5.06747 5.10120 5.17572 5.31654 5.43879 5.55686 5.64421 5.66087 5.73118 5.77395 5.89926 5.92548 5.98272 6.08031 6.28199 6.31686 6.35042 6.45842 6.54384 6.60896 6.68349 6.72684 6.78045 6.97218 7.03590 7.19342 7.51789 7.74291 7.94476 8.20723 8.46527 9.57375 10.16234 10.50845 11.50293 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002292 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.939174 B =12213.967118 C =13017.996514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.147 3.853 15 H 0.088 0.912 16 N -0.716 5.716 17 C 0.590 3.410 18 O -0.544 6.544 19 C -0.222 4.222 20 C -0.189 4.189 21 C -0.030 4.030 22 O -0.171 6.171 23 C 0.088 3.912 24 C -0.072 4.072 25 C 0.529 3.471 26 N -0.852 5.852 27 O -0.534 6.534 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.158 0.842 38 H 0.209 0.791 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.403 0.597 42 H 0.405 0.595 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 -28.746 -5.699 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.107 0.893 16 N -0.365 5.365 17 C 0.378 3.622 18 O -0.423 6.423 19 C -0.227 4.227 20 C -0.209 4.209 21 C -0.096 4.096 22 O -0.067 6.067 23 C 0.034 3.966 24 C -0.111 4.111 25 C 0.313 3.687 26 N -0.416 5.416 27 O -0.409 6.409 28 C -0.163 4.163 29 C -0.172 4.172 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.176 0.824 38 H 0.226 0.774 39 H 0.132 0.868 40 H 0.162 0.838 41 H 0.231 0.769 42 H 0.236 0.764 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.942 -28.409 -6.097 29.874 hybrid contribution 0.332 0.998 0.137 1.061 sum 7.274 -27.411 -5.960 28.979 Atomic orbital electron populations 1.69660 1.05080 1.25557 1.57989 1.24733 0.95504 0.97634 1.03238 0.86213 0.78645 0.83997 0.77502 1.21784 1.21829 1.20807 1.19250 0.90972 0.84174 1.42264 0.91244 1.42431 1.05779 0.99806 1.88560 1.20239 0.94278 0.85952 0.92809 0.93622 1.21745 0.98918 0.93448 1.01753 1.21754 1.00834 0.98271 0.94872 1.21125 0.95394 0.81630 0.97518 0.89345 1.45930 1.53049 1.21714 1.15831 1.17168 0.79644 0.82301 0.83108 1.90734 1.44576 1.73828 1.33165 1.21167 1.07672 0.98191 0.95652 1.22856 1.01449 0.96489 1.00081 1.23849 1.02920 0.99976 0.82896 1.83721 1.52523 1.41311 1.29155 1.21648 0.93458 0.86418 0.95046 1.20337 0.99607 1.03670 0.87498 1.20133 0.87200 0.78789 0.82603 1.43710 1.22378 1.63194 1.12357 1.90796 1.22928 1.51272 1.75945 1.21901 0.98566 0.95317 1.00536 1.22217 0.99723 0.94527 1.00765 0.93581 0.78321 0.91961 0.91367 0.91861 0.91577 0.76860 0.82414 0.77439 0.86815 0.83780 0.76885 0.76434 0.92336 0.92354 0.92520 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.33 5.12 -53.43 -0.27 -18.60 16 10 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 13 C -0.12 -1.50 5.39 -26.73 -0.14 -1.65 16 14 C 0.15 2.03 2.46 -67.93 -0.17 1.86 16 15 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 16 N -0.72 -8.61 5.07 -54.89 -0.28 -8.89 16 17 C 0.59 8.13 7.78 -12.54 -0.10 8.03 16 18 O -0.54 -8.84 14.51 5.26 0.08 -8.77 16 19 C -0.22 -2.65 6.31 -103.28 -0.65 -3.30 16 20 C -0.19 -1.67 10.60 -37.45 -0.40 -2.07 16 21 C -0.03 -0.24 12.03 29.30 0.35 0.12 16 22 O -0.17 -1.74 10.52 7.65 0.08 -1.66 16 23 C 0.09 0.98 5.87 -34.97 -0.21 0.78 16 24 C -0.07 -0.63 5.71 -29.04 -0.17 -0.79 16 25 C 0.53 5.72 8.09 -10.99 -0.09 5.63 16 26 N -0.85 -5.62 8.87 31.22 0.28 -5.34 16 27 O -0.53 -8.37 16.87 5.55 0.09 -8.28 16 28 C -0.12 -1.96 5.49 -26.73 -0.15 -2.11 16 29 C -0.13 -2.46 5.50 -26.73 -0.15 -2.61 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.69 7.77 -40.82 -0.32 3.37 16 37 H 0.16 0.96 7.74 -52.49 -0.41 0.55 16 38 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.14 1.28 6.48 -51.93 -0.34 0.94 16 41 H 0.40 1.27 8.83 -40.82 -0.36 0.91 16 42 H 0.40 2.43 8.93 -40.82 -0.36 2.07 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -37.76 384.40 -7.66 -45.42 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.69 Total: 12.60 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.44 Total: -2.16 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.45 Total: -60.64 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.25 Total: -18.70 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.76 -7.66 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034719432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.169 kcal (2) G-P(sol) polarization free energy of solvation -37.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds