Wall clock time and date at job start Tue Mar 31 2020 18:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47151 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47064 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.46911 * 149.99982 * 3 2 1 7 7 C 1.38811 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99928 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46964 * 35.00037 * 10 9 7 12 12 C 1.52995 * 109.46999 * 155.00247 * 10 9 7 13 13 C 1.53004 * 109.47171 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47056 * 299.99786 * 13 12 10 15 15 H 1.08999 * 109.47307 * 300.00557 * 14 13 12 16 16 N 1.46491 * 109.46982 * 179.97438 * 14 13 12 17 17 C 1.34783 * 119.99946 * 155.00432 * 16 14 13 18 18 O 1.21616 * 119.99356 * 359.97438 * 17 16 14 19 19 C 1.47374 * 120.00404 * 180.02562 * 17 16 14 20 20 C 1.47029 * 127.19007 * 0.02562 * 19 17 16 21 21 C 1.34177 * 105.95271 * 180.22912 * 20 19 17 22 22 O 1.34222 * 109.12302 * 359.62455 * 21 20 19 23 23 C 1.33647 * 110.90811 * 0.39552 * 22 21 20 24 24 C 1.50699 * 125.80169 * 179.74016 * 23 22 21 25 25 C 1.50697 * 109.47513 * 270.02644 * 24 23 22 26 26 N 1.34769 * 120.00159 * 179.97438 * 25 24 23 27 27 O 1.21284 * 119.99832 * 0.02562 * 25 24 23 28 28 C 1.53008 * 109.46538 * 59.99944 * 14 13 12 29 29 C 1.52994 * 109.47114 * 299.99855 * 28 14 13 30 30 H 0.96992 * 120.00155 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99909 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47434 * 60.00078 * 12 10 9 33 33 H 1.08996 * 109.47544 * 300.00274 * 12 10 9 34 34 H 1.08996 * 109.47110 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.46971 * 59.99680 * 13 12 10 36 36 H 0.97001 * 120.00536 * 335.00405 * 16 14 13 37 37 H 1.08002 * 127.02021 * 359.95707 * 20 19 17 38 38 H 1.08002 * 125.43865 * 179.74455 * 21 20 19 39 39 H 1.09002 * 109.46790 * 30.02952 * 24 23 22 40 40 H 1.08996 * 109.47066 * 150.01883 * 24 23 22 41 41 H 0.97003 * 120.00131 * 0.02562 * 26 25 24 42 42 H 0.97001 * 120.00290 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.46821 * 60.00315 * 28 14 13 44 44 H 1.09001 * 109.46503 * 180.02562 * 28 14 13 45 45 H 1.08999 * 109.47652 * 299.99951 * 29 28 14 46 46 H 1.09009 * 109.46895 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6090 13 6 1.9463 -6.0770 0.6096 14 6 2.3107 -6.4561 -0.8272 15 1 1.4002 -6.5626 -1.4170 16 7 3.0439 -7.7244 -0.8266 17 6 3.0359 -8.5080 -1.9232 18 8 2.4195 -8.1623 -2.9130 19 6 3.7730 -9.7841 -1.9224 20 6 4.5634 -10.3533 -0.8211 21 6 5.0496 -11.5170 -1.2790 22 8 4.6245 -11.7061 -2.5380 23 6 3.8645 -10.6842 -2.9434 24 6 3.2189 -10.5489 -4.2983 25 6 4.1604 -9.8364 -5.2347 26 7 3.7934 -9.6023 -6.5101 27 8 5.2489 -9.4745 -4.8407 28 6 3.1879 -5.3607 -1.4368 29 6 2.4226 -4.0359 -1.4373 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 0.2703 -4.8584 0.0196 33 1 0.9217 -4.4823 1.6327 34 1 1.3212 -6.8574 1.0435 35 1 2.8567 -5.9704 1.1993 36 1 3.5352 -8.0002 -0.0370 37 1 4.7239 -9.9206 0.1554 38 1 5.6806 -12.1943 -0.7227 39 1 2.9934 -11.5393 -4.6938 40 1 2.2962 -9.9762 -4.2055 41 1 2.9230 -9.8921 -6.8253 42 1 4.3993 -9.1434 -7.1127 43 1 4.0984 -5.2542 -0.8470 44 1 3.4472 -5.6305 -2.4605 45 1 1.5122 -4.1423 -2.0271 46 1 3.0475 -3.2555 -1.8720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034719432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:08 Heat of formation + Delta-G solvation = -95.742103 kcal Electronic energy + Delta-G solvation = -28732.947302 eV Core-core repulsion = 24622.341879 eV Total energy + Delta-G solvation = -4110.605423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57767 -40.90953 -40.41234 -39.19185 -36.38175 -34.79419 -34.73196 -33.96087 -32.97130 -32.29271 -31.70350 -29.26535 -28.26879 -25.75852 -24.44472 -23.60048 -22.72358 -22.28783 -21.54812 -21.21460 -20.51432 -19.25600 -18.93212 -18.27534 -17.95654 -17.30334 -16.91410 -16.84156 -16.72410 -16.22518 -15.96294 -15.70747 -15.44167 -15.34905 -15.06567 -14.79084 -14.60615 -14.37863 -14.06135 -13.87106 -13.74210 -13.43764 -13.15222 -13.09891 -12.83217 -12.72847 -12.42944 -12.32220 -12.13850 -12.04420 -11.66820 -11.47399 -11.28173 -11.21309 -11.01906 -10.84317 -10.80000 -10.71538 -10.05217 -9.57798 -8.99390 -7.93536 -5.21507 0.26529 1.15976 1.46250 1.48029 1.55442 1.56168 1.75934 2.21037 2.29457 2.56552 2.69900 3.39121 3.45313 3.67429 3.78060 3.84156 3.89440 3.92937 4.00995 4.18225 4.28865 4.35948 4.39081 4.40854 4.50983 4.58516 4.62370 4.65232 4.77519 4.88366 4.98385 4.99258 5.11221 5.13115 5.24542 5.27048 5.39282 5.47633 5.53819 5.55007 5.63053 5.82863 6.02160 6.29533 6.37953 6.57700 7.22544 7.27077 7.34944 8.12471 8.35183 9.30181 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002292 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.939174 B =12213.967118 C =13017.996514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.173 3.827 11 H 0.046 0.954 12 C -0.112 4.112 13 C -0.105 4.105 14 C 0.155 3.845 15 H 0.070 0.930 16 N -0.703 5.703 17 C 0.584 3.416 18 O -0.578 6.578 19 C -0.251 4.251 20 C -0.198 4.198 21 C -0.025 4.025 22 O -0.179 6.179 23 C 0.074 3.926 24 C -0.070 4.070 25 C 0.522 3.478 26 N -0.833 5.833 27 O -0.591 6.591 28 C -0.112 4.112 29 C -0.121 4.121 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.185 0.815 38 H 0.251 0.749 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.421 0.579 42 H 0.409 0.591 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -30.976 -4.666 32.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.064 0.936 12 C -0.151 4.151 13 C -0.143 4.143 14 C 0.051 3.949 15 H 0.088 0.912 16 N -0.353 5.353 17 C 0.373 3.627 18 O -0.459 6.459 19 C -0.255 4.255 20 C -0.217 4.217 21 C -0.090 4.090 22 O -0.074 6.074 23 C 0.020 3.980 24 C -0.109 4.109 25 C 0.307 3.693 26 N -0.397 5.397 27 O -0.472 6.472 28 C -0.152 4.152 29 C -0.162 4.162 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.202 0.798 38 H 0.267 0.733 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.252 0.748 42 H 0.240 0.760 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.191 -30.699 -5.076 32.176 hybrid contribution -0.030 1.605 -0.251 1.625 sum 8.161 -29.094 -5.327 30.683 Atomic orbital electron populations 1.69813 1.06542 1.25932 1.59886 1.25534 0.96375 1.00982 1.04112 0.85189 0.77820 0.79806 0.77285 1.21786 1.22099 1.19365 1.19614 0.91333 0.85365 1.40491 0.90873 1.42660 1.05460 1.01075 1.88565 1.20476 0.94542 0.85127 0.93382 0.93616 1.21630 0.98372 0.93947 1.01138 1.21652 1.01717 0.96764 0.94172 1.20866 0.94322 0.81766 0.97952 0.91174 1.45706 1.52773 1.20636 1.16223 1.17541 0.79300 0.83005 0.82818 1.90707 1.46075 1.74758 1.34398 1.21246 1.08935 0.97737 0.97609 1.23197 1.01142 0.96830 1.00548 1.24741 1.02053 1.00243 0.81931 1.83737 1.52336 1.41020 1.30335 1.22031 0.93585 0.86613 0.95760 1.20416 0.98493 1.05468 0.86565 1.20550 0.86713 0.78340 0.83681 1.43593 1.23169 1.61761 1.11180 1.90759 1.25329 1.53893 1.77200 1.21761 0.98971 0.94268 1.00153 1.22020 0.98961 0.95596 0.99633 0.94097 0.79633 0.92614 0.91260 0.89059 0.89589 0.74913 0.79801 0.73303 0.82923 0.84112 0.74751 0.75992 0.91063 0.93959 0.93986 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.13 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.92 5.12 -322.94 -1.65 -39.57 16 10 C 0.17 6.84 2.77 44.99 0.12 6.97 16 11 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 12 C -0.11 -3.49 5.39 30.59 0.16 -3.33 16 13 C -0.10 -2.37 5.39 30.60 0.16 -2.20 16 14 C 0.16 4.09 2.46 45.00 0.11 4.20 16 15 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 16 N -0.70 -15.68 5.07 -445.83 -2.26 -17.94 16 17 C 0.58 15.74 7.78 86.65 0.67 16.41 16 18 O -0.58 -19.03 14.51 -4.08 -0.06 -19.09 16 19 C -0.25 -5.69 6.31 -18.99 -0.12 -5.81 16 20 C -0.20 -3.00 10.60 23.65 0.25 -2.75 16 21 C -0.02 -0.31 12.03 66.89 0.80 0.49 16 22 O -0.18 -3.30 10.52 4.44 0.05 -3.25 16 23 C 0.07 1.58 5.87 25.26 0.15 1.73 16 24 C -0.07 -1.17 5.71 29.10 0.17 -1.01 16 25 C 0.52 11.19 8.09 87.66 0.71 11.90 16 26 N -0.83 -10.37 8.87 -173.54 -1.54 -11.91 16 27 O -0.59 -18.94 16.87 -3.04 -0.05 -19.00 16 28 C -0.11 -3.50 5.49 30.60 0.17 -3.34 16 29 C -0.12 -4.64 5.50 30.59 0.17 -4.47 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.37 20.50 7.80 -92.71 -0.72 19.77 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 6.46 7.77 -92.71 -0.72 5.74 16 37 H 0.18 1.58 7.74 -2.91 -0.02 1.55 16 38 H 0.25 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.14 2.46 6.48 -2.39 -0.02 2.44 16 41 H 0.42 2.09 8.83 -92.71 -0.82 1.27 16 42 H 0.41 4.71 8.93 -92.71 -0.83 3.88 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -85.01 384.40 -0.41 -85.42 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -2.04 Total: 34.22 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 4.84 Total: 2.17 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.17 Total: -129.61 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.06 Total: -41.34 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -85.01 -0.41 -85.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034719432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.321 kcal (2) G-P(sol) polarization free energy of solvation -85.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds