Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99929 * 2 1 4 4 H 1.48502 * 109.47042 * 240.00045 * 3 2 1 5 5 H 1.48506 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47430 * 120.00299 * 3 2 1 7 7 C 1.38814 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99979 * 196.90958 * 7 2 1 9 9 N 1.36943 * 119.99369 * 16.90587 * 7 2 1 10 10 C 1.47156 * 120.97847 * 206.24536 * 9 7 2 11 11 C 1.53289 * 108.38656 * 230.51656 * 10 9 7 12 12 O 1.42963 * 109.26377 * 307.72284 * 11 10 9 13 13 C 1.42960 * 114.16657 * 62.49771 * 12 11 10 14 14 H 1.09004 * 109.51437 * 57.45498 * 13 12 11 15 15 C 1.53003 * 109.50785 * 177.54916 * 13 12 11 16 16 N 1.46498 * 109.47462 * 299.89841 * 15 13 12 17 17 C 1.34777 * 120.00181 * 180.02562 * 16 15 13 18 18 O 1.21700 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.46680 * 120.00156 * 180.02562 * 17 16 15 20 20 C 1.38151 * 126.18766 * 180.02562 * 19 17 16 21 21 C 1.38947 * 106.94552 * 179.97438 * 20 19 17 22 22 C 1.36271 * 108.02486 * 0.05555 * 21 20 19 23 23 N 1.34745 * 108.83539 * 359.90705 * 22 21 20 24 24 H 0.96998 * 125.71266 * 180.02562 * 23 22 21 25 25 C 1.51086 * 122.58277 * 179.85722 * 22 21 20 26 26 C 1.53529 * 107.72537 * 344.12220 * 25 22 21 27 27 O 1.42992 * 109.70095 * 47.99953 * 26 25 22 28 28 C 1.43414 * 114.34605 * 288.99543 * 27 26 25 29 29 C 1.47149 * 120.98431 * 26.22754 * 9 7 2 30 30 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.67962 * 350.24287 * 10 9 7 32 32 H 1.08999 * 109.67814 * 110.75203 * 10 9 7 33 33 H 1.08998 * 109.51039 * 67.62324 * 11 10 9 34 34 H 1.08997 * 109.51443 * 187.77400 * 11 10 9 35 35 H 1.09007 * 109.46780 * 179.89993 * 15 13 12 36 36 H 1.08996 * 109.46830 * 59.90333 * 15 13 12 37 37 H 0.97003 * 119.99959 * 359.97438 * 16 15 13 38 38 H 1.08000 * 126.53057 * 359.96829 * 20 19 17 39 39 H 1.09007 * 109.80920 * 103.63241 * 25 22 21 40 40 H 1.09000 * 109.81002 * 224.52432 * 25 22 21 41 41 H 1.09001 * 109.41482 * 287.93681 * 26 25 22 42 42 H 1.08993 * 109.43854 * 168.08109 * 26 25 22 43 43 H 1.08995 * 109.76699 * 170.34339 * 28 27 26 44 44 H 1.09005 * 109.76742 * 291.10931 * 28 27 26 45 45 H 1.08998 * 109.68398 * 9.76479 * 29 9 7 46 46 H 1.09000 * 109.71168 * 249.22074 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2224 0.2715 9 7 1.3699 -2.3623 -0.3460 10 6 1.8339 -3.6635 0.1610 11 6 1.9810 -4.6208 -1.0271 12 8 0.7652 -4.6294 -1.7792 13 6 0.4241 -3.3661 -2.3548 14 1 1.2368 -3.0274 -2.9974 15 6 -0.8551 -3.5102 -3.1819 16 7 -0.6381 -4.4884 -4.2506 17 6 -1.6342 -4.7790 -5.1107 18 8 -2.7142 -4.2291 -4.9991 19 6 -1.4171 -5.7588 -6.1804 20 6 -2.3432 -6.1509 -7.1277 21 6 -1.7189 -7.0895 -7.9401 22 6 -0.4445 -7.2575 -7.4878 23 7 -0.2514 -6.4548 -6.4229 24 1 0.5696 -6.3799 -5.9118 25 6 0.5295 -8.2134 -8.1361 26 6 -0.2757 -9.1642 -9.0332 27 8 -1.1799 -8.4108 -9.8451 28 6 -2.2787 -7.8334 -9.1268 29 6 0.1972 -2.3445 -1.2347 30 1 -0.4850 0.8400 0.0004 31 1 2.7974 -3.5421 0.6562 32 1 1.1061 -4.0630 0.8672 33 1 2.8000 -4.2870 -1.6643 34 1 2.1899 -5.6260 -0.6611 35 1 -1.1156 -2.5462 -3.6190 36 1 -1.6673 -3.8489 -2.5387 37 1 0.2228 -4.9264 -4.3398 38 1 -3.3589 -5.7956 -7.2193 39 1 1.2473 -7.6571 -8.7390 40 1 1.0536 -8.7835 -7.3690 41 1 -0.8398 -9.8588 -8.4107 42 1 0.4065 -9.7237 -9.6732 43 1 -2.8194 -7.1424 -9.7734 44 1 -2.9502 -8.6210 -8.7847 45 1 0.0768 -1.3498 -1.6639 46 1 -0.6961 -2.6113 -0.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035398458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = -56.170060 kcal Electronic energy + Delta-G solvation = -28699.798541 eV Core-core repulsion = 24590.909090 eV Total energy + Delta-G solvation = -4108.889451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90089 -39.46021 -38.53957 -38.05752 -34.92735 -34.40011 -32.78173 -32.01523 -31.38356 -30.90060 -29.24340 -27.53740 -26.23909 -24.96485 -23.92541 -23.35819 -22.24746 -21.57772 -20.35283 -19.73320 -19.31584 -18.54851 -17.06571 -16.68040 -16.22446 -16.11372 -15.85598 -15.57142 -15.23618 -14.95362 -14.70714 -14.39796 -14.33927 -14.05863 -13.85250 -13.79843 -13.34781 -13.31765 -13.07445 -12.87271 -12.75881 -12.50171 -12.17908 -11.74586 -11.61076 -11.26544 -11.16088 -10.89496 -10.80875 -10.50480 -10.34690 -10.18631 -10.16348 -10.00649 -9.74107 -9.18723 -9.10837 -9.00494 -8.61114 -8.19937 -6.83182 -5.90658 -3.34837 1.29548 2.33508 2.70593 3.16745 3.31218 3.36257 3.37456 3.38160 3.50876 4.15150 4.25083 4.38220 4.46852 4.68930 4.76550 4.83325 4.93167 5.09357 5.13302 5.17234 5.24339 5.29181 5.43081 5.43947 5.52323 5.53978 5.72142 5.77050 5.83509 5.89081 5.93857 6.03051 6.14066 6.27120 6.39668 6.44748 6.53732 6.63760 6.70250 6.81085 6.98664 7.07906 7.40201 7.53603 7.64043 7.73753 8.20543 8.26603 9.04145 9.67033 10.23755 11.17533 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002225 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.075221 B =12580.339056 C =13071.157710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.392 6.392 13 C 0.055 3.945 14 H 0.055 0.945 15 C 0.133 3.867 16 N -0.720 5.720 17 C 0.585 3.415 18 O -0.530 6.530 19 C -0.049 4.049 20 C -0.089 4.089 21 C -0.222 4.222 22 C 0.052 3.948 23 N -0.523 5.523 24 H 0.417 0.583 25 C -0.087 4.087 26 C 0.069 3.931 27 O -0.381 6.381 28 C 0.137 3.863 29 C 0.153 3.847 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.395 0.605 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -18.230 -16.415 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.311 6.311 13 C -0.005 4.005 14 H 0.073 0.927 15 C 0.010 3.990 16 N -0.370 5.370 17 C 0.372 3.628 18 O -0.407 6.407 19 C -0.162 4.162 20 C -0.115 4.115 21 C -0.229 4.229 22 C -0.067 4.067 23 N -0.118 5.118 24 H 0.254 0.746 25 C -0.126 4.126 26 C -0.008 4.008 27 O -0.299 6.299 28 C 0.060 3.940 29 C 0.026 3.974 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.228 0.772 38 H 0.169 0.831 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.359 -17.716 -16.362 24.119 hybrid contribution 1.498 1.009 0.847 1.995 sum 1.858 -16.708 -15.515 22.876 Atomic orbital electron populations 1.70001 1.05257 1.26008 1.53227 1.25072 0.95372 0.98557 1.00540 0.86319 0.78901 0.83073 0.78168 1.20959 1.21441 1.20777 1.19139 0.92631 0.84476 1.42627 0.91368 1.44040 1.33717 1.01368 1.52652 1.21596 0.98682 0.87561 0.93915 1.23010 0.86082 0.99646 0.94061 1.87770 1.42305 1.31545 1.69483 1.23168 0.94910 0.86507 0.95911 0.92674 1.21475 0.97890 0.92290 0.87355 1.45862 1.15016 1.44623 1.31497 1.17014 0.84398 0.81030 0.80364 1.90855 1.24683 1.52244 1.72926 1.20581 0.87824 1.04209 1.03585 1.20815 0.99175 0.97558 0.93971 1.19919 0.94886 1.05303 1.02772 1.20228 0.97033 0.98022 0.91455 1.41645 1.12799 1.32488 1.24870 0.74552 1.21027 0.96630 0.96021 0.98888 1.22531 0.92133 0.92305 0.93875 1.88017 1.37975 1.69297 1.34599 1.21051 0.87620 0.95130 0.90181 1.21306 0.89542 0.97590 0.88968 0.93252 0.91935 0.95507 0.93915 0.90020 0.89653 0.90399 0.77197 0.83128 0.89249 0.89500 0.92478 0.88026 0.87894 0.91984 0.88499 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.14 55.49 0.62 -24.98 16 2 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 3 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.53 3.05 -171.83 -0.52 -15.06 16 10 C 0.11 2.21 6.74 -3.53 -0.02 2.18 16 11 C 0.05 0.84 6.98 37.31 0.26 1.10 16 12 O -0.39 -6.98 10.14 -35.23 -0.36 -7.33 16 13 C 0.05 1.00 2.86 -26.58 -0.08 0.92 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 2.23 5.37 -4.04 -0.02 2.21 16 16 N -0.72 -10.24 5.45 -61.62 -0.34 -10.57 16 17 C 0.59 9.01 7.79 -12.85 -0.10 8.91 16 18 O -0.53 -10.06 16.88 5.19 0.09 -9.97 16 19 C -0.05 -0.63 7.06 -81.75 -0.58 -1.21 16 20 C -0.09 -1.09 10.63 -39.35 -0.42 -1.51 16 21 C -0.22 -2.34 6.02 -105.00 -0.63 -2.98 16 22 C 0.05 0.49 7.14 -81.83 -0.58 -0.09 16 23 N -0.52 -5.09 5.97 -5.43 -0.03 -5.12 16 24 H 0.42 3.00 8.19 -40.82 -0.33 2.67 16 25 C -0.09 -0.55 6.56 -27.42 -0.18 -0.73 16 26 C 0.07 0.43 6.78 37.43 0.25 0.68 16 27 O -0.38 -3.43 10.74 -35.23 -0.38 -3.81 16 28 C 0.14 1.17 7.25 36.07 0.26 1.43 16 29 C 0.15 3.53 4.73 -3.54 -0.02 3.51 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 4.67 7.48 -40.82 -0.31 4.37 16 38 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.27 374.61 -9.23 -42.50 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.84 Total: 5.18 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.09 Total: 7.37 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.27 Total: -55.73 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.65 Total: -21.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.27 -9.23 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035398458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.670 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds