Wall clock time and date at job start Tue Mar 31 2020 18:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99929 * 2 1 4 4 H 1.48502 * 109.47042 * 240.00045 * 3 2 1 5 5 H 1.48506 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47430 * 120.00299 * 3 2 1 7 7 C 1.38814 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99979 * 196.90958 * 7 2 1 9 9 N 1.36943 * 119.99369 * 16.90587 * 7 2 1 10 10 C 1.47156 * 120.97847 * 206.24536 * 9 7 2 11 11 C 1.53289 * 108.38656 * 230.51656 * 10 9 7 12 12 O 1.42963 * 109.26377 * 307.72284 * 11 10 9 13 13 C 1.42960 * 114.16657 * 62.49771 * 12 11 10 14 14 H 1.09004 * 109.51437 * 57.45498 * 13 12 11 15 15 C 1.53003 * 109.50785 * 177.54916 * 13 12 11 16 16 N 1.46498 * 109.47462 * 299.89841 * 15 13 12 17 17 C 1.34777 * 120.00181 * 180.02562 * 16 15 13 18 18 O 1.21700 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.46680 * 120.00156 * 180.02562 * 17 16 15 20 20 C 1.38151 * 126.18766 * 180.02562 * 19 17 16 21 21 C 1.38947 * 106.94552 * 179.97438 * 20 19 17 22 22 C 1.36271 * 108.02486 * 0.05555 * 21 20 19 23 23 N 1.34745 * 108.83539 * 359.90705 * 22 21 20 24 24 H 0.96998 * 125.71266 * 180.02562 * 23 22 21 25 25 C 1.51086 * 122.58277 * 179.85722 * 22 21 20 26 26 C 1.53529 * 107.72537 * 344.12220 * 25 22 21 27 27 O 1.42992 * 109.70095 * 47.99953 * 26 25 22 28 28 C 1.43414 * 114.34605 * 288.99543 * 27 26 25 29 29 C 1.47149 * 120.98431 * 26.22754 * 9 7 2 30 30 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.67962 * 350.24287 * 10 9 7 32 32 H 1.08999 * 109.67814 * 110.75203 * 10 9 7 33 33 H 1.08998 * 109.51039 * 67.62324 * 11 10 9 34 34 H 1.08997 * 109.51443 * 187.77400 * 11 10 9 35 35 H 1.09007 * 109.46780 * 179.89993 * 15 13 12 36 36 H 1.08996 * 109.46830 * 59.90333 * 15 13 12 37 37 H 0.97003 * 119.99959 * 359.97438 * 16 15 13 38 38 H 1.08000 * 126.53057 * 359.96829 * 20 19 17 39 39 H 1.09007 * 109.80920 * 103.63241 * 25 22 21 40 40 H 1.09000 * 109.81002 * 224.52432 * 25 22 21 41 41 H 1.09001 * 109.41482 * 287.93681 * 26 25 22 42 42 H 1.08993 * 109.43854 * 168.08109 * 26 25 22 43 43 H 1.08995 * 109.76699 * 170.34339 * 28 27 26 44 44 H 1.09005 * 109.76742 * 291.10931 * 28 27 26 45 45 H 1.08998 * 109.68398 * 9.76479 * 29 9 7 46 46 H 1.09000 * 109.71168 * 249.22074 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2224 0.2715 9 7 1.3699 -2.3623 -0.3460 10 6 1.8339 -3.6635 0.1610 11 6 1.9810 -4.6208 -1.0271 12 8 0.7652 -4.6294 -1.7792 13 6 0.4241 -3.3661 -2.3548 14 1 1.2368 -3.0274 -2.9974 15 6 -0.8551 -3.5102 -3.1819 16 7 -0.6381 -4.4884 -4.2506 17 6 -1.6342 -4.7790 -5.1107 18 8 -2.7142 -4.2291 -4.9991 19 6 -1.4171 -5.7588 -6.1804 20 6 -2.3432 -6.1509 -7.1277 21 6 -1.7189 -7.0895 -7.9401 22 6 -0.4445 -7.2575 -7.4878 23 7 -0.2514 -6.4548 -6.4229 24 1 0.5696 -6.3799 -5.9118 25 6 0.5295 -8.2134 -8.1361 26 6 -0.2757 -9.1642 -9.0332 27 8 -1.1799 -8.4108 -9.8451 28 6 -2.2787 -7.8334 -9.1268 29 6 0.1972 -2.3445 -1.2347 30 1 -0.4850 0.8400 0.0004 31 1 2.7974 -3.5421 0.6562 32 1 1.1061 -4.0630 0.8672 33 1 2.8000 -4.2870 -1.6643 34 1 2.1899 -5.6260 -0.6611 35 1 -1.1156 -2.5462 -3.6190 36 1 -1.6673 -3.8489 -2.5387 37 1 0.2228 -4.9264 -4.3398 38 1 -3.3589 -5.7956 -7.2193 39 1 1.2473 -7.6571 -8.7390 40 1 1.0536 -8.7835 -7.3690 41 1 -0.8398 -9.8588 -8.4107 42 1 0.4065 -9.7237 -9.6732 43 1 -2.8194 -7.1424 -9.7734 44 1 -2.9502 -8.6210 -8.7847 45 1 0.0768 -1.3498 -1.6639 46 1 -0.6961 -2.6113 -0.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035398458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:01 Heat of formation + Delta-G solvation = -80.893012 kcal Electronic energy + Delta-G solvation = -28700.870608 eV Core-core repulsion = 24590.909090 eV Total energy + Delta-G solvation = -4109.961518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72684 -40.72816 -39.91716 -38.82184 -36.53051 -35.95377 -33.42010 -33.31782 -32.97313 -32.17457 -30.09336 -29.12008 -27.65953 -26.03403 -25.10757 -24.59582 -23.46435 -22.79244 -21.66392 -21.11904 -20.05196 -19.57758 -18.92916 -17.58236 -17.39644 -17.18248 -16.93253 -16.86722 -16.49665 -16.16128 -15.94359 -15.69416 -15.53581 -15.20602 -15.08445 -14.93004 -14.63580 -14.56399 -14.49504 -14.07036 -13.78118 -13.47837 -13.22155 -13.03952 -13.00324 -12.67645 -12.56838 -12.37300 -12.23078 -12.15578 -11.92253 -11.75443 -11.44541 -11.28642 -10.84320 -10.75812 -10.58399 -10.33833 -9.90489 -9.03462 -8.79164 -7.94232 -5.41928 0.32947 1.44864 1.47005 1.50984 1.54253 1.86681 2.02219 2.25301 2.45572 2.72624 2.97587 3.20624 3.45104 3.65275 3.75686 3.95168 4.00480 4.01237 4.04601 4.19846 4.21647 4.36329 4.40908 4.46485 4.54530 4.56395 4.63303 4.65878 4.75903 4.79486 4.82839 4.91135 4.95227 5.01721 5.03351 5.10219 5.19094 5.20767 5.49105 5.57083 5.65088 5.75972 6.21282 6.24114 6.28419 6.31734 6.47706 7.01954 7.03266 7.71286 8.24692 9.11607 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002225 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.075221 B =12580.339056 C =13071.157710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.078 3.922 14 H 0.066 0.934 15 C 0.144 3.856 16 N -0.707 5.707 17 C 0.586 3.414 18 O -0.576 6.576 19 C -0.076 4.076 20 C -0.097 4.097 21 C -0.239 4.239 22 C 0.066 3.934 23 N -0.511 5.511 24 H 0.429 0.571 25 C -0.085 4.085 26 C 0.061 3.939 27 O -0.397 6.397 28 C 0.137 3.863 29 C 0.159 3.841 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -20.530 -17.871 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.093 0.907 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.084 0.916 15 C 0.019 3.981 16 N -0.358 5.358 17 C 0.376 3.624 18 O -0.456 6.456 19 C -0.189 4.189 20 C -0.124 4.124 21 C -0.245 4.245 22 C -0.055 4.055 23 N -0.107 5.107 24 H 0.270 0.730 25 C -0.123 4.123 26 C -0.016 4.016 27 O -0.316 6.316 28 C 0.061 3.939 29 C 0.032 3.968 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 3.075 -20.066 -17.810 27.005 hybrid contribution 0.713 1.601 1.313 2.190 sum 3.788 -18.465 -16.497 25.049 Atomic orbital electron populations 1.70171 1.06774 1.26231 1.54963 1.25861 0.96075 1.01751 1.00956 0.85295 0.77515 0.78864 0.78501 1.20088 1.22213 1.19945 1.19519 0.93081 0.85524 1.41606 0.90730 1.44343 1.33674 1.02445 1.53386 1.21838 0.98591 0.86474 0.95559 1.23094 0.85753 1.00748 0.92432 1.87788 1.43195 1.30514 1.69435 1.22741 0.95694 0.85545 0.94221 0.91619 1.21154 0.96597 0.92651 0.87679 1.45608 1.15636 1.44008 1.30517 1.17323 0.83679 0.80876 0.80566 1.90825 1.26445 1.54124 1.74216 1.20121 0.89550 1.05427 1.03785 1.20981 0.99193 0.97941 0.94309 1.20207 0.95535 1.05339 1.03423 1.20866 0.97342 0.97009 0.90244 1.41573 1.12374 1.31782 1.24953 0.73046 1.21215 0.96072 0.95552 0.99450 1.22803 0.92213 0.92211 0.94329 1.87999 1.38428 1.69637 1.35547 1.21103 0.87838 0.95437 0.89548 1.21082 0.88339 0.97537 0.89864 0.93899 0.90853 0.96742 0.92587 0.85983 0.90387 0.92057 0.75480 0.83680 0.88210 0.86818 0.91885 0.85591 0.87506 0.90857 0.91425 0.98177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 11.14 21.65 0.24 -54.83 16 2 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 3 Si 0.97 43.96 29.59 68.60 2.03 45.99 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.27 -14.32 9.65 84.03 0.81 -13.51 16 8 H 0.08 3.81 7.88 -2.91 -0.02 3.79 16 9 N -0.61 -30.23 3.05 -697.55 -2.13 -32.36 16 10 C 0.10 3.96 6.74 86.35 0.58 4.55 16 11 C 0.06 1.73 6.98 72.08 0.50 2.23 16 12 O -0.39 -13.13 10.14 -148.98 -1.51 -14.64 16 13 C 0.08 2.82 2.86 30.69 0.09 2.91 16 14 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 4.91 5.37 86.38 0.46 5.38 16 16 N -0.71 -19.79 5.45 -467.07 -2.54 -22.33 16 17 C 0.59 18.28 7.79 86.45 0.67 18.95 16 18 O -0.58 -22.79 16.88 -4.35 -0.07 -22.86 16 19 C -0.08 -1.92 7.06 40.37 0.29 -1.63 16 20 C -0.10 -2.38 10.63 22.42 0.24 -2.14 16 21 C -0.24 -4.70 6.02 -20.11 -0.12 -4.83 16 22 C 0.07 1.09 7.14 41.78 0.30 1.38 16 23 N -0.51 -8.85 5.97 -171.11 -1.02 -9.87 16 24 H 0.43 4.95 8.19 -92.71 -0.76 4.19 16 25 C -0.08 -0.74 6.56 30.15 0.20 -0.54 16 26 C 0.06 0.55 6.78 72.16 0.49 1.04 16 27 O -0.40 -6.22 10.74 -148.98 -1.60 -7.82 16 28 C 0.14 2.13 7.25 71.28 0.52 2.65 16 29 C 0.16 7.57 4.73 86.35 0.41 7.98 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.41 8.94 7.48 -92.71 -0.69 8.25 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.50 8.09 -2.39 -0.02 0.48 16 42 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.07 3.62 6.14 -2.39 -0.01 3.60 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -74.41 374.61 -1.19 -75.60 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.44 Total: 21.08 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.85 Total: 22.05 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -5.45 Total: -119.39 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -3.18 Total: -45.33 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -74.41 -1.19 -75.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035398458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.297 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds