Wall clock time and date at job start Tue Mar 31 2020 18:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48502 * 109.46933 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47081 * 29.99574 * 3 2 1 6 6 H 1.48497 * 109.47412 * 149.99898 * 3 2 1 7 7 C 1.38812 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00374 * 196.90541 * 7 2 1 9 9 N 1.36939 * 119.99812 * 16.91173 * 7 2 1 10 10 C 1.47153 * 120.98389 * 26.25563 * 9 7 2 11 11 C 1.53294 * 108.38327 * 129.44401 * 10 9 7 12 12 O 1.42959 * 109.26378 * 52.28155 * 11 10 9 13 13 C 1.42958 * 114.16906 * 297.50058 * 12 11 10 14 14 H 1.09000 * 109.51345 * 302.54581 * 13 12 11 15 15 C 1.53005 * 109.51217 * 182.44786 * 13 12 11 16 16 N 1.46498 * 109.47046 * 65.09959 * 15 13 12 17 17 C 1.34776 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21583 * 120.00154 * 359.97438 * 17 16 15 19 19 C 1.47514 * 119.99922 * 180.02562 * 17 16 15 20 20 O 1.35189 * 127.15077 * 359.97438 * 19 17 16 21 21 N 1.21482 * 111.55383 * 179.97438 * 20 19 17 22 22 C 1.29081 * 111.68025 * 359.90771 * 21 20 19 23 23 C 1.35248 * 127.15507 * 180.02562 * 19 17 16 24 24 C 1.50108 * 131.33644 * 0.20578 * 23 19 17 25 25 C 1.53575 * 108.01649 * 163.78792 * 24 23 19 26 26 C 1.53001 * 109.81616 * 50.04321 * 25 24 23 27 27 C 1.50653 * 130.33355 * 180.38026 * 22 21 20 28 28 C 1.47155 * 120.98146 * 206.24036 * 9 7 2 29 29 H 0.97003 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.68359 * 249.17080 * 10 9 7 31 31 H 1.09003 * 109.67912 * 9.68539 * 10 9 7 32 32 H 1.09001 * 109.51164 * 172.22684 * 11 10 9 33 33 H 1.08995 * 109.51468 * 292.38233 * 11 10 9 34 34 H 1.09000 * 109.47053 * 305.09859 * 15 13 12 35 35 H 1.09005 * 109.46786 * 185.09897 * 15 13 12 36 36 H 0.97005 * 119.99984 * 0.02562 * 16 15 13 37 37 H 1.08992 * 109.75601 * 44.14930 * 24 23 19 38 38 H 1.09005 * 109.79090 * 283.43709 * 24 23 19 39 39 H 1.08997 * 109.41221 * 289.93307 * 25 24 23 40 40 H 1.09006 * 109.35497 * 170.11175 * 25 24 23 41 41 H 1.09004 * 109.37610 * 48.46381 * 26 25 24 42 42 H 1.08993 * 109.37922 * 168.12333 * 26 25 24 43 43 H 1.08998 * 109.74117 * 43.44055 * 27 22 21 44 44 H 1.09003 * 109.73761 * 282.73246 * 27 22 21 45 45 H 1.08997 * 109.68258 * 110.82979 * 28 9 7 46 46 H 1.08998 * 109.70712 * 350.29144 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2223 0.2725 9 7 1.3699 -2.3626 -0.3439 10 6 0.1977 -2.3457 -1.2333 11 6 0.4255 -3.3678 -2.3528 12 8 0.7667 -4.6306 -1.7763 13 6 1.9820 -4.6212 -1.0236 14 1 2.8019 -4.2882 -1.6600 15 6 2.2753 -6.0319 -0.5088 16 7 2.5321 -6.9222 -1.6436 17 6 2.8157 -8.2223 -1.4293 18 8 2.8589 -8.6561 -0.2944 19 6 3.0748 -9.1186 -2.5719 20 8 3.0652 -8.7927 -3.8839 21 7 3.3177 -9.7527 -4.5841 22 6 3.5262 -10.8146 -3.8804 23 6 3.3704 -10.4376 -2.5248 24 6 3.5214 -11.3789 -1.3653 25 6 3.4562 -12.8144 -1.9073 26 6 4.4180 -12.9675 -3.0874 27 6 3.8742 -12.2161 -4.3097 28 6 1.8340 -3.6633 0.1641 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6954 -2.6127 -0.6685 31 1 0.0769 -1.3510 -1.6625 32 1 -0.4855 -3.4710 -2.9424 33 1 1.2391 -3.0296 -2.9945 34 1 1.4171 -6.3990 0.0541 35 1 3.1514 -6.0073 0.1393 36 1 2.4987 -6.5758 -2.5490 37 1 2.7134 -11.2173 -0.6519 38 1 4.4820 -11.2127 -0.8776 39 1 2.4402 -13.0311 -2.2374 40 1 3.7372 -13.5117 -1.1180 41 1 5.3915 -12.5591 -2.8158 42 1 4.5261 -14.0243 -3.3310 43 1 4.6337 -12.1840 -5.0908 44 1 2.9820 -12.7189 -4.6831 45 1 1.1056 -4.0630 0.8695 46 1 2.7970 -3.5419 0.6600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035443513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:20 Heat of formation + Delta-G solvation = -5.886526 kcal Electronic energy + Delta-G solvation = -28801.452475 eV Core-core repulsion = 24694.743482 eV Total energy + Delta-G solvation = -4106.708993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.20198 -39.80991 -38.50994 -38.06531 -35.09202 -34.35979 -33.22609 -32.66926 -31.65430 -30.84949 -30.03528 -27.64157 -26.01091 -25.18937 -23.54292 -23.40690 -23.05752 -21.73961 -20.62992 -20.20369 -19.59703 -18.29225 -17.96810 -16.96540 -16.28722 -16.07051 -16.03819 -15.39935 -15.09762 -14.95530 -14.77139 -14.43337 -14.31731 -14.25504 -13.83939 -13.62481 -13.24901 -13.12644 -12.98598 -12.83010 -12.78108 -12.48396 -12.10313 -11.61519 -11.41365 -11.36567 -11.15539 -10.92643 -10.89780 -10.77424 -10.48838 -10.40421 -10.27791 -10.21175 -10.01464 -9.75551 -9.70356 -9.16514 -9.10690 -8.57858 -6.79933 -5.87673 -3.31723 0.62088 1.78956 2.42741 2.85695 3.10328 3.32598 3.39659 3.40891 3.55713 4.11776 4.19669 4.35744 4.39839 4.41572 4.57825 4.69978 4.85046 5.00139 5.05113 5.07310 5.15804 5.29541 5.34988 5.40273 5.41193 5.46316 5.52447 5.59243 5.69327 5.73512 5.75171 5.84535 5.88535 5.95066 6.10698 6.18707 6.33095 6.34332 6.44505 6.70188 7.06444 7.23298 7.48565 7.67464 7.79004 7.81564 7.92269 8.29675 9.07671 9.70291 10.26776 11.20402 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.002096 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.985379 B =13357.978478 C =13627.464618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.129 3.871 16 N -0.702 5.702 17 C 0.603 3.397 18 O -0.515 6.515 19 C -0.076 4.076 20 O 0.101 5.899 21 N -0.333 5.333 22 C 0.015 3.985 23 C -0.122 4.122 24 C -0.049 4.049 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.040 4.040 28 C 0.122 3.878 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.031 0.969 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -24.165 -7.040 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.003 3.997 14 H 0.079 0.921 15 C 0.006 3.994 16 N -0.353 5.353 17 C 0.386 3.614 18 O -0.391 6.391 19 C -0.140 4.140 20 O 0.032 5.968 21 N -0.036 5.036 22 C -0.146 4.146 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.078 4.078 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.049 0.951 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.893 -24.165 -7.496 26.224 hybrid contribution 0.444 1.183 0.141 1.271 sum 7.337 -22.983 -7.355 25.222 Atomic orbital electron populations 1.70033 1.05275 1.25717 1.53604 1.25057 0.95366 0.98523 1.00708 0.86230 0.79077 0.83362 0.77741 1.21356 1.21669 1.20353 1.19205 0.92658 0.84425 1.42248 0.91273 1.44068 1.33593 1.00989 1.53101 1.21456 0.89126 0.98356 0.89752 1.23334 0.99120 0.84761 0.96581 1.87789 1.41173 1.32706 1.69233 1.22822 0.87794 0.93529 0.95522 0.92121 1.21570 1.02119 0.87850 0.87857 1.45881 1.69247 1.08228 1.11900 1.16473 0.77923 0.81440 0.85548 1.90856 1.52348 1.75339 1.20570 1.23491 1.08928 0.95844 0.85753 1.85273 1.66410 1.31156 1.13955 1.73451 1.15381 0.95710 1.19090 1.23423 1.03390 0.97440 0.90341 1.21102 1.01762 0.93088 0.96772 1.20120 1.04037 0.91211 0.93259 1.21683 1.00227 0.96045 0.97994 1.21621 0.99482 1.00492 0.94135 1.20128 1.02174 0.86710 0.98800 1.21433 0.99038 0.87219 0.92820 0.93457 0.95316 0.88723 0.89960 0.94011 0.90020 0.89493 0.75413 0.88818 0.89374 0.91385 0.90534 0.91218 0.90409 0.89430 0.89284 0.95133 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.52 3.05 -171.83 -0.52 -15.04 16 10 C 0.14 3.24 5.45 -3.53 -0.02 3.22 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.09 10.33 -35.23 -0.36 -7.45 16 13 C 0.06 1.06 2.81 -26.58 -0.07 0.98 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 1.82 5.34 -4.04 -0.02 1.79 16 16 N -0.70 -9.07 5.50 -61.35 -0.34 -9.41 16 17 C 0.60 8.13 7.82 -12.48 -0.10 8.03 16 18 O -0.51 -7.97 15.93 5.29 0.08 -7.89 16 19 C -0.08 -0.94 7.28 -36.87 -0.27 -1.21 16 20 O 0.10 1.28 11.10 13.82 0.15 1.43 16 21 N -0.33 -4.17 12.03 33.16 0.40 -3.77 16 22 C 0.01 0.16 7.21 -82.50 -0.60 -0.44 16 23 C -0.12 -1.35 6.03 -104.70 -0.63 -1.98 16 24 C -0.05 -0.43 5.59 -27.87 -0.16 -0.59 16 25 C -0.12 -0.74 5.87 -26.43 -0.16 -0.90 16 26 C -0.12 -0.64 5.83 -26.50 -0.15 -0.80 16 27 C -0.04 -0.28 6.32 -27.68 -0.17 -0.45 16 28 C 0.12 2.45 6.02 -3.53 -0.02 2.43 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.41 4.88 8.31 -40.82 -0.34 4.54 16 37 H 0.09 0.91 7.77 -51.93 -0.40 0.50 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -31.15 373.45 -8.65 -39.80 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.94 Total: 1.46 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.34 Total: 4.10 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.16 Total: -53.25 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.13 Total: -13.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.15 -8.65 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035443513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.917 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds