Wall clock time and date at job start Tue Mar 31 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48502 * 109.46933 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47081 * 29.99574 * 3 2 1 6 6 H 1.48497 * 109.47412 * 149.99898 * 3 2 1 7 7 C 1.38812 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00374 * 196.90541 * 7 2 1 9 9 N 1.36939 * 119.99812 * 16.91173 * 7 2 1 10 10 C 1.47153 * 120.98389 * 26.25563 * 9 7 2 11 11 C 1.53294 * 108.38327 * 129.44401 * 10 9 7 12 12 O 1.42959 * 109.26378 * 52.28155 * 11 10 9 13 13 C 1.42958 * 114.16906 * 297.50058 * 12 11 10 14 14 H 1.09000 * 109.51345 * 302.54581 * 13 12 11 15 15 C 1.53005 * 109.51217 * 182.44786 * 13 12 11 16 16 N 1.46498 * 109.47046 * 65.09959 * 15 13 12 17 17 C 1.34776 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21583 * 120.00154 * 359.97438 * 17 16 15 19 19 C 1.47514 * 119.99922 * 180.02562 * 17 16 15 20 20 O 1.35189 * 127.15077 * 359.97438 * 19 17 16 21 21 N 1.21482 * 111.55383 * 179.97438 * 20 19 17 22 22 C 1.29081 * 111.68025 * 359.90771 * 21 20 19 23 23 C 1.35248 * 127.15507 * 180.02562 * 19 17 16 24 24 C 1.50108 * 131.33644 * 0.20578 * 23 19 17 25 25 C 1.53575 * 108.01649 * 163.78792 * 24 23 19 26 26 C 1.53001 * 109.81616 * 50.04321 * 25 24 23 27 27 C 1.50653 * 130.33355 * 180.38026 * 22 21 20 28 28 C 1.47155 * 120.98146 * 206.24036 * 9 7 2 29 29 H 0.97003 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.68359 * 249.17080 * 10 9 7 31 31 H 1.09003 * 109.67912 * 9.68539 * 10 9 7 32 32 H 1.09001 * 109.51164 * 172.22684 * 11 10 9 33 33 H 1.08995 * 109.51468 * 292.38233 * 11 10 9 34 34 H 1.09000 * 109.47053 * 305.09859 * 15 13 12 35 35 H 1.09005 * 109.46786 * 185.09897 * 15 13 12 36 36 H 0.97005 * 119.99984 * 0.02562 * 16 15 13 37 37 H 1.08992 * 109.75601 * 44.14930 * 24 23 19 38 38 H 1.09005 * 109.79090 * 283.43709 * 24 23 19 39 39 H 1.08997 * 109.41221 * 289.93307 * 25 24 23 40 40 H 1.09006 * 109.35497 * 170.11175 * 25 24 23 41 41 H 1.09004 * 109.37610 * 48.46381 * 26 25 24 42 42 H 1.08993 * 109.37922 * 168.12333 * 26 25 24 43 43 H 1.08998 * 109.74117 * 43.44055 * 27 22 21 44 44 H 1.09003 * 109.73761 * 282.73246 * 27 22 21 45 45 H 1.08997 * 109.68258 * 110.82979 * 28 9 7 46 46 H 1.08998 * 109.70712 * 350.29144 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2223 0.2725 9 7 1.3699 -2.3626 -0.3439 10 6 0.1977 -2.3457 -1.2333 11 6 0.4255 -3.3678 -2.3528 12 8 0.7667 -4.6306 -1.7763 13 6 1.9820 -4.6212 -1.0236 14 1 2.8019 -4.2882 -1.6600 15 6 2.2753 -6.0319 -0.5088 16 7 2.5321 -6.9222 -1.6436 17 6 2.8157 -8.2223 -1.4293 18 8 2.8589 -8.6561 -0.2944 19 6 3.0748 -9.1186 -2.5719 20 8 3.0652 -8.7927 -3.8839 21 7 3.3177 -9.7527 -4.5841 22 6 3.5262 -10.8146 -3.8804 23 6 3.3704 -10.4376 -2.5248 24 6 3.5214 -11.3789 -1.3653 25 6 3.4562 -12.8144 -1.9073 26 6 4.4180 -12.9675 -3.0874 27 6 3.8742 -12.2161 -4.3097 28 6 1.8340 -3.6633 0.1641 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6954 -2.6127 -0.6685 31 1 0.0769 -1.3510 -1.6625 32 1 -0.4855 -3.4710 -2.9424 33 1 1.2391 -3.0296 -2.9945 34 1 1.4171 -6.3990 0.0541 35 1 3.1514 -6.0073 0.1393 36 1 2.4987 -6.5758 -2.5490 37 1 2.7134 -11.2173 -0.6519 38 1 4.4820 -11.2127 -0.8776 39 1 2.4402 -13.0311 -2.2374 40 1 3.7372 -13.5117 -1.1180 41 1 5.3915 -12.5591 -2.8158 42 1 4.5261 -14.0243 -3.3310 43 1 4.6337 -12.1840 -5.0908 44 1 2.9820 -12.7189 -4.6831 45 1 1.1056 -4.0630 0.8695 46 1 2.7970 -3.5419 0.6600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035443513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:19 Heat of formation + Delta-G solvation = -26.315017 kcal Electronic energy + Delta-G solvation = -28802.338321 eV Core-core repulsion = 24694.743482 eV Total energy + Delta-G solvation = -4107.594839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.06956 -40.96683 -39.98892 -38.71927 -36.56799 -35.89549 -34.07704 -33.42748 -33.33448 -32.40361 -30.86128 -29.26679 -27.46652 -26.01687 -25.03809 -24.39436 -24.19354 -23.08212 -21.77349 -21.19182 -20.71583 -19.27962 -18.86913 -18.82244 -17.60025 -17.32026 -17.01343 -16.82950 -16.24200 -16.09951 -15.94902 -15.73322 -15.50236 -15.13396 -15.01619 -14.87183 -14.67520 -14.53371 -14.23782 -13.77205 -13.65956 -13.39474 -13.23672 -13.01917 -12.84439 -12.69302 -12.53220 -12.16766 -12.08531 -11.92366 -11.88014 -11.87764 -11.59346 -11.44589 -11.29559 -10.99594 -10.80444 -10.66477 -10.55351 -10.23080 -8.76240 -7.91490 -5.38862 -0.32604 0.96818 1.44713 1.47312 1.48312 1.57151 1.82476 2.09208 2.47782 2.76347 2.84214 3.23485 3.36062 3.47896 3.67704 3.81123 3.91875 3.95109 3.98294 4.06816 4.24584 4.29791 4.37704 4.41741 4.46792 4.51667 4.53133 4.60158 4.71808 4.74373 4.85267 4.89351 4.90138 4.98030 5.04231 5.12813 5.14052 5.17671 5.24347 5.29494 5.40347 5.55514 5.61272 6.18417 6.24737 6.32595 6.79910 6.97591 7.05780 7.74086 8.27380 9.14539 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.002096 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.985379 B =13357.978478 C =13627.464618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.076 3.924 14 H 0.070 0.930 15 C 0.140 3.860 16 N -0.697 5.697 17 C 0.608 3.392 18 O -0.538 6.538 19 C -0.093 4.093 20 O 0.089 5.911 21 N -0.355 5.355 22 C 0.020 3.980 23 C -0.121 4.121 24 C -0.052 4.052 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.043 4.043 28 C 0.117 3.883 29 H 0.251 0.749 30 H 0.000 1.000 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.021 0.979 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.704 -26.358 -7.910 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.016 3.984 14 H 0.088 0.912 15 C 0.017 3.983 16 N -0.348 5.348 17 C 0.392 3.608 18 O -0.416 6.416 19 C -0.157 4.157 20 O 0.022 5.978 21 N -0.060 5.060 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.089 4.089 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.081 4.081 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.039 0.961 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.521 -26.371 -8.373 28.950 hybrid contribution -0.054 1.782 0.447 1.838 sum 8.467 -24.589 -7.926 27.187 Atomic orbital electron populations 1.70190 1.06720 1.26038 1.55226 1.25837 0.96111 1.01655 1.01109 0.85207 0.78042 0.79188 0.77635 1.21011 1.22346 1.19179 1.19562 0.93055 0.85491 1.41310 0.90803 1.44349 1.33638 1.01996 1.53794 1.21311 0.88029 0.98337 0.90619 1.23154 1.00693 0.83625 0.94892 1.87805 1.41925 1.32036 1.69220 1.22698 0.87490 0.94231 0.93976 0.91207 1.21385 1.02485 0.86388 0.88077 1.45763 1.69054 1.08058 1.11881 1.16509 0.77316 0.81409 0.85556 1.90841 1.53449 1.75755 1.21528 1.23367 1.10417 0.96307 0.85626 1.85247 1.67167 1.31510 1.13875 1.73437 1.16560 0.96378 1.19627 1.24061 1.01692 0.98469 0.89913 1.21523 1.00349 0.92850 0.97878 1.20241 1.03647 0.92625 0.92402 1.21700 1.00665 0.94296 0.98898 1.21641 0.98863 1.01819 0.92957 1.20394 1.03186 0.84604 0.99891 1.21601 0.99055 0.86089 0.94166 0.93968 0.98203 0.91468 0.87470 0.93136 0.90753 0.88049 0.74695 0.90009 0.89042 0.91328 0.88644 0.91400 0.87741 0.88354 0.87899 0.96057 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.67 11.14 21.65 0.24 -54.43 16 2 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 3 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.26 -14.17 9.65 84.03 0.81 -13.36 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 9 N -0.61 -30.25 3.05 -697.54 -2.13 -32.38 16 10 C 0.14 6.81 5.45 86.35 0.47 7.28 16 11 C 0.05 1.98 6.98 72.08 0.50 2.49 16 12 O -0.39 -13.74 10.33 -148.98 -1.54 -15.28 16 13 C 0.08 2.43 2.81 30.69 0.09 2.52 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.14 3.77 5.34 86.38 0.46 4.23 16 16 N -0.70 -17.29 5.50 -466.29 -2.57 -19.86 16 17 C 0.61 16.03 7.82 86.69 0.68 16.71 16 18 O -0.54 -16.40 15.93 -3.98 -0.06 -16.46 16 19 C -0.09 -2.26 7.28 24.03 0.17 -2.09 16 20 O 0.09 2.20 11.10 59.46 0.66 2.86 16 21 N -0.35 -8.57 12.03 -50.82 -0.61 -9.18 16 22 C 0.02 0.38 7.21 43.77 0.32 0.70 16 23 C -0.12 -2.55 6.03 -19.92 -0.12 -2.67 16 24 C -0.05 -0.84 5.59 29.86 0.17 -0.67 16 25 C -0.12 -1.13 5.87 30.79 0.18 -0.95 16 26 C -0.12 -0.86 5.83 30.74 0.18 -0.69 16 27 C -0.04 -0.47 6.32 29.98 0.19 -0.28 16 28 C 0.12 4.66 6.02 86.35 0.52 5.18 16 29 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.42 9.41 8.31 -92.70 -0.77 8.64 16 37 H 0.08 1.53 7.77 -2.39 -0.02 1.51 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 40 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.07 0.56 8.10 -2.38 -0.02 0.55 16 42 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 2.81 7.96 -2.39 -0.02 2.79 16 Total: -1.00 -67.97 373.45 1.29 -66.68 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.23 Total: 16.09 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.04 Total: 15.99 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -5.06 Total: -115.85 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.94 Total: -28.88 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.97 1.29 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035443513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.363 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds