Wall clock time and date at job start Tue Mar 31 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51588 * 57.34666 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.44738 * 13 12 11 16 16 N 1.46503 * 109.46847 * 299.99881 * 15 13 12 17 17 C 1.34771 * 120.00194 * 180.02562 * 16 15 13 18 18 O 1.21588 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.47513 * 120.00209 * 179.97438 * 17 16 15 20 20 O 1.35186 * 127.15306 * 359.68724 * 19 17 16 21 21 N 1.21482 * 111.54958 * 179.77181 * 20 19 17 22 22 C 1.29062 * 111.68497 * 0.37252 * 21 20 19 23 23 C 1.35246 * 127.15368 * 179.97438 * 19 17 16 24 24 C 1.50106 * 131.34034 * 0.24601 * 23 19 17 25 25 C 1.53569 * 108.02425 * 163.73924 * 24 23 19 26 26 C 1.53008 * 109.80656 * 50.05069 * 25 24 23 27 27 C 1.50659 * 130.33586 * 180.02562 * 22 21 20 28 28 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 29 29 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 30 30 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 31 31 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 32 32 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 33 33 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 34 34 H 1.08999 * 109.47032 * 59.99457 * 15 13 12 35 35 H 1.08997 * 109.47638 * 180.02562 * 15 13 12 36 36 H 0.97001 * 120.00115 * 359.97438 * 16 15 13 37 37 H 1.08998 * 109.75519 * 283.37495 * 24 23 19 38 38 H 1.09001 * 109.75265 * 44.06194 * 24 23 19 39 39 H 1.08998 * 109.42115 * 170.15210 * 25 24 23 40 40 H 1.09001 * 109.41816 * 289.95350 * 25 24 23 41 41 H 1.09005 * 109.37836 * 48.45755 * 26 25 24 42 42 H 1.08999 * 109.37883 * 168.12062 * 26 25 24 43 43 H 1.08993 * 109.73984 * 43.46606 * 27 22 21 44 44 H 1.09001 * 109.77644 * 282.78168 * 27 22 21 45 45 H 1.08999 * 109.68106 * 249.21167 * 28 9 7 46 46 H 1.09001 * 109.68075 * 9.76662 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8001 -4.2797 1.6833 15 6 2.2747 -6.0297 0.5412 16 7 2.4096 -6.9390 1.6819 17 6 2.6718 -8.2448 1.4756 18 8 2.7960 -8.6683 0.3426 19 6 2.8082 -9.1602 2.6243 20 8 2.7049 -8.8464 3.9351 21 7 2.8629 -9.8221 4.6413 22 6 3.0927 -10.8835 3.9438 23 6 3.0679 -10.4869 2.5851 24 6 3.2962 -11.4189 1.4307 25 6 3.9405 -12.7018 1.9760 26 6 3.1348 -13.2198 3.1693 27 6 3.3452 -12.3026 4.3821 28 6 1.8304 -3.6636 -0.1493 29 1 -0.4849 0.8401 -0.0040 30 1 0.0770 -1.3425 1.6699 31 1 -0.6958 -2.6080 0.6813 32 1 1.2377 -3.0144 3.0103 33 1 -0.4867 -3.4548 2.9602 34 1 1.4561 -6.3649 -0.0957 35 1 3.2024 -6.0253 -0.0311 36 1 2.3110 -6.6011 2.5858 37 1 2.3445 -11.6576 0.9561 38 1 3.9622 -10.9509 0.7057 39 1 3.9567 -13.4602 1.1933 40 1 4.9611 -12.4881 2.2934 41 1 2.0764 -13.2404 2.9095 42 1 3.4643 -14.2287 3.4176 43 1 2.6462 -12.5735 5.1733 44 1 4.3683 -12.3999 4.7455 45 1 1.0990 -4.0643 -0.8511 46 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035443514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:24 Heat of formation + Delta-G solvation = -5.808044 kcal Electronic energy + Delta-G solvation = -28815.111060 eV Core-core repulsion = 24708.405470 eV Total energy + Delta-G solvation = -4106.705590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.19832 -39.80192 -38.49820 -38.05861 -35.08482 -34.35180 -33.22214 -32.66321 -31.64197 -30.84522 -30.02632 -27.64612 -26.00328 -25.18641 -23.53872 -23.41040 -23.04762 -21.72581 -20.61574 -20.19438 -19.61228 -18.29051 -17.96413 -16.96383 -16.31108 -16.05535 -16.00284 -15.40312 -15.09267 -14.95240 -14.77260 -14.43286 -14.30922 -14.23866 -13.84507 -13.63351 -13.25345 -13.12411 -12.98286 -12.83008 -12.77511 -12.47503 -12.09833 -11.60709 -11.40891 -11.36584 -11.16262 -10.92186 -10.90634 -10.75417 -10.47981 -10.41191 -10.27652 -10.20871 -10.01924 -9.74779 -9.70218 -9.15919 -9.10030 -8.58074 -6.79699 -5.88022 -3.31877 0.62678 1.79478 2.43406 2.86265 3.10976 3.31613 3.39784 3.41777 3.56145 4.11339 4.20501 4.36122 4.39789 4.42027 4.58165 4.70714 4.85593 5.00332 5.05658 5.07963 5.16205 5.29427 5.35517 5.39946 5.40878 5.46203 5.52840 5.59499 5.69459 5.72921 5.75564 5.84643 5.88906 5.95787 6.10846 6.19191 6.33138 6.34320 6.44691 6.70193 7.06341 7.24602 7.48509 7.67663 7.79005 7.81997 7.93154 8.29523 9.07515 9.70168 10.26770 11.20035 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.002100 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.092657 B =13328.594604 C =13673.662164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.603 3.397 18 O -0.515 6.515 19 C -0.076 4.076 20 O 0.102 5.898 21 N -0.333 5.333 22 C 0.015 3.985 23 C -0.123 4.123 24 C -0.049 4.049 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.040 4.040 28 C 0.122 3.878 29 H 0.255 0.745 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.031 0.969 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -24.264 7.216 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.003 3.997 14 H 0.079 0.921 15 C 0.006 3.994 16 N -0.352 5.352 17 C 0.386 3.614 18 O -0.392 6.392 19 C -0.140 4.140 20 O 0.032 5.968 21 N -0.036 5.036 22 C -0.146 4.146 23 C -0.128 4.128 24 C -0.086 4.086 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.078 4.078 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.049 0.951 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.186 -24.271 7.689 26.201 hybrid contribution 0.425 1.189 -0.170 1.274 sum 6.611 -23.082 7.519 25.160 Atomic orbital electron populations 1.70044 1.05291 1.25602 1.53688 1.25068 0.95366 0.98557 1.00713 0.86177 0.79317 0.83647 0.77353 1.20189 1.21624 1.21467 1.19237 0.92658 0.84523 1.42052 0.91247 1.44092 1.33658 1.00976 1.53032 1.21452 0.89106 0.98416 0.89711 1.23331 0.99129 0.84665 0.96637 1.87778 1.41108 1.32594 1.69444 1.22916 0.87744 0.93493 0.95543 0.92079 1.21583 1.02571 0.87375 0.87850 1.45854 1.70059 1.07356 1.11889 1.16478 0.77953 0.81454 0.85531 1.90857 1.51228 1.76275 1.20821 1.23489 1.09000 0.95720 0.85777 1.85275 1.67382 1.30340 1.13784 1.73444 1.16116 0.95098 1.18978 1.23418 1.03367 0.97425 0.90389 1.21102 1.02036 0.92903 0.96711 1.20117 1.02511 0.92658 0.93336 1.21680 0.99555 0.96788 0.97903 1.21637 1.01376 0.98608 0.94130 1.20137 1.03162 0.85698 0.98806 1.21523 0.99031 0.87233 0.92732 0.93513 0.88740 0.95330 0.93996 0.89955 0.90085 0.89553 0.75334 0.89362 0.88836 0.90543 0.91419 0.91182 0.90418 0.89444 0.89282 0.95111 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.19 29.59 -169.99 -5.03 16.16 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -6.81 9.65 -15.06 -0.15 -6.96 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 9 N -0.59 -14.51 3.04 -171.57 -0.52 -15.03 16 10 C 0.14 3.24 5.44 -3.53 -0.02 3.22 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.06 10.13 -35.23 -0.36 -7.42 16 13 C 0.06 1.05 2.88 -26.36 -0.08 0.97 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.82 5.37 -4.04 -0.02 1.80 16 16 N -0.70 -9.11 5.45 -61.36 -0.33 -9.44 16 17 C 0.60 8.15 7.82 -12.48 -0.10 8.06 16 18 O -0.52 -8.00 15.93 5.29 0.08 -7.91 16 19 C -0.08 -0.94 7.28 -36.87 -0.27 -1.21 16 20 O 0.10 1.28 11.10 13.83 0.15 1.44 16 21 N -0.33 -4.19 12.03 33.15 0.40 -3.79 16 22 C 0.01 0.16 7.21 -82.51 -0.60 -0.44 16 23 C -0.12 -1.36 6.03 -104.71 -0.63 -1.99 16 24 C -0.05 -0.43 5.59 -27.88 -0.16 -0.59 16 25 C -0.12 -0.74 5.87 -26.43 -0.16 -0.90 16 26 C -0.12 -0.65 5.84 -26.47 -0.15 -0.80 16 27 C -0.04 -0.28 6.32 -27.64 -0.17 -0.45 16 28 C 0.12 2.45 6.05 -3.31 -0.02 2.43 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.41 4.95 8.19 -40.82 -0.33 4.62 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.89 7.77 -51.93 -0.40 0.49 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 41 H 0.07 0.41 8.10 -51.93 -0.42 -0.02 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -31.14 373.18 -8.64 -39.78 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.93 Total: 1.51 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.34 Total: 4.11 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.16 Total: -53.29 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.12 Total: -13.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.14 -8.64 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035443514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.972 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds