Wall clock time and date at job start Tue Mar 31 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51588 * 57.34666 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.44738 * 13 12 11 16 16 N 1.46503 * 109.46847 * 299.99881 * 15 13 12 17 17 C 1.34771 * 120.00194 * 180.02562 * 16 15 13 18 18 O 1.21588 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.47513 * 120.00209 * 179.97438 * 17 16 15 20 20 O 1.35186 * 127.15306 * 359.68724 * 19 17 16 21 21 N 1.21482 * 111.54958 * 179.77181 * 20 19 17 22 22 C 1.29062 * 111.68497 * 0.37252 * 21 20 19 23 23 C 1.35246 * 127.15368 * 179.97438 * 19 17 16 24 24 C 1.50106 * 131.34034 * 0.24601 * 23 19 17 25 25 C 1.53569 * 108.02425 * 163.73924 * 24 23 19 26 26 C 1.53008 * 109.80656 * 50.05069 * 25 24 23 27 27 C 1.50659 * 130.33586 * 180.02562 * 22 21 20 28 28 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 29 29 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 30 30 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 31 31 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 32 32 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 33 33 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 34 34 H 1.08999 * 109.47032 * 59.99457 * 15 13 12 35 35 H 1.08997 * 109.47638 * 180.02562 * 15 13 12 36 36 H 0.97001 * 120.00115 * 359.97438 * 16 15 13 37 37 H 1.08998 * 109.75519 * 283.37495 * 24 23 19 38 38 H 1.09001 * 109.75265 * 44.06194 * 24 23 19 39 39 H 1.08998 * 109.42115 * 170.15210 * 25 24 23 40 40 H 1.09001 * 109.41816 * 289.95350 * 25 24 23 41 41 H 1.09005 * 109.37836 * 48.45755 * 26 25 24 42 42 H 1.08999 * 109.37883 * 168.12062 * 26 25 24 43 43 H 1.08993 * 109.73984 * 43.46606 * 27 22 21 44 44 H 1.09001 * 109.77644 * 282.78168 * 27 22 21 45 45 H 1.08999 * 109.68106 * 249.21167 * 28 9 7 46 46 H 1.09001 * 109.68075 * 9.76662 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8001 -4.2797 1.6833 15 6 2.2747 -6.0297 0.5412 16 7 2.4096 -6.9390 1.6819 17 6 2.6718 -8.2448 1.4756 18 8 2.7960 -8.6683 0.3426 19 6 2.8082 -9.1602 2.6243 20 8 2.7049 -8.8464 3.9351 21 7 2.8629 -9.8221 4.6413 22 6 3.0927 -10.8835 3.9438 23 6 3.0679 -10.4869 2.5851 24 6 3.2962 -11.4189 1.4307 25 6 3.9405 -12.7018 1.9760 26 6 3.1348 -13.2198 3.1693 27 6 3.3452 -12.3026 4.3821 28 6 1.8304 -3.6636 -0.1493 29 1 -0.4849 0.8401 -0.0040 30 1 0.0770 -1.3425 1.6699 31 1 -0.6958 -2.6080 0.6813 32 1 1.2377 -3.0144 3.0103 33 1 -0.4867 -3.4548 2.9602 34 1 1.4561 -6.3649 -0.0957 35 1 3.2024 -6.0253 -0.0311 36 1 2.3110 -6.6011 2.5858 37 1 2.3445 -11.6576 0.9561 38 1 3.9622 -10.9509 0.7057 39 1 3.9567 -13.4602 1.1933 40 1 4.9611 -12.4881 2.2934 41 1 2.0764 -13.2404 2.9095 42 1 3.4643 -14.2287 3.4176 43 1 2.6462 -12.5735 5.1733 44 1 4.3683 -12.3999 4.7455 45 1 1.0990 -4.0643 -0.8511 46 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035443514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:23 Heat of formation + Delta-G solvation = -26.163064 kcal Electronic energy + Delta-G solvation = -28815.993720 eV Core-core repulsion = 24708.405470 eV Total energy + Delta-G solvation = -4107.588250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.06915 -40.96062 -39.97554 -38.71566 -36.57041 -35.87767 -34.07489 -33.42358 -33.32963 -32.39142 -30.85568 -29.26894 -27.46155 -26.01794 -25.03469 -24.38909 -24.19082 -23.07053 -21.75374 -21.20276 -20.72098 -19.28008 -18.85929 -18.83100 -17.61580 -17.28027 -17.01393 -16.82845 -16.24073 -16.11586 -15.93070 -15.72974 -15.50288 -15.12012 -15.01769 -14.88206 -14.68963 -14.52259 -14.23489 -13.76670 -13.65685 -13.39759 -13.22802 -13.02843 -12.84421 -12.70844 -12.50254 -12.17301 -12.06546 -11.92509 -11.88192 -11.87939 -11.59212 -11.44430 -11.28838 -10.99653 -10.80848 -10.66196 -10.55418 -10.22211 -8.76009 -7.91771 -5.38983 -0.32373 0.97040 1.44871 1.46138 1.48246 1.58410 1.82682 2.09336 2.47757 2.76676 2.84371 3.23540 3.36412 3.48404 3.68121 3.81241 3.92316 3.95247 3.98179 4.06581 4.24110 4.29902 4.37599 4.41927 4.46856 4.51323 4.53270 4.61301 4.72468 4.75188 4.85394 4.89577 4.90206 4.98059 5.04580 5.12691 5.14161 5.17618 5.24538 5.29580 5.40435 5.55670 5.61432 6.19185 6.24605 6.32626 6.80471 6.97846 7.05731 7.74023 8.27411 9.14355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.002100 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.092657 B =13328.594604 C =13673.662164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.264 4.264 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.076 3.924 14 H 0.070 0.930 15 C 0.140 3.860 16 N -0.696 5.696 17 C 0.608 3.392 18 O -0.538 6.538 19 C -0.093 4.093 20 O 0.089 5.911 21 N -0.355 5.355 22 C 0.020 3.980 23 C -0.121 4.121 24 C -0.052 4.052 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.043 4.043 28 C 0.117 3.883 29 H 0.251 0.749 30 H 0.067 0.933 31 H -0.001 1.001 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.417 0.583 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.021 0.979 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -26.484 8.122 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.310 6.310 13 C 0.016 3.984 14 H 0.088 0.912 15 C 0.017 3.983 16 N -0.347 5.347 17 C 0.392 3.608 18 O -0.416 6.416 19 C -0.157 4.157 20 O 0.022 5.978 21 N -0.060 5.060 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.089 4.089 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.081 4.081 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.039 0.961 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.735 -26.503 8.602 28.918 hybrid contribution -0.050 1.797 -0.488 1.862 sum 7.685 -24.707 8.114 27.117 Atomic orbital electron populations 1.70197 1.06739 1.25972 1.55296 1.25846 0.96111 1.01686 1.01121 0.85155 0.78660 0.79549 0.76754 1.18869 1.22077 1.21566 1.19590 0.93048 0.85594 1.41099 0.90802 1.44372 1.33699 1.01980 1.53720 1.21308 0.87997 0.98377 0.90604 1.23150 1.00713 0.83544 0.94917 1.87794 1.41835 1.31910 1.69420 1.22788 0.87450 0.94209 0.93952 0.91182 1.21407 1.03053 0.85922 0.87968 1.45741 1.69902 1.07190 1.11848 1.16513 0.77325 0.81438 0.85547 1.90841 1.52332 1.76675 1.21765 1.23368 1.10509 0.96188 0.85643 1.85248 1.68158 1.30691 1.13710 1.73429 1.17333 0.95738 1.19511 1.24059 1.01576 0.98525 0.89977 1.21523 1.00599 0.92677 0.97815 1.20240 1.02598 0.93576 0.92508 1.21694 0.99389 0.95672 0.98745 1.21659 1.01156 0.99494 0.93031 1.20402 1.04308 0.83513 0.99832 1.21691 0.99036 0.86084 0.94111 0.93969 0.91497 0.98240 0.93104 0.87460 0.90812 0.88026 0.74670 0.89272 0.89833 0.88669 0.91176 0.91536 0.87721 0.88459 0.87754 0.96064 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.68 11.14 21.65 0.24 -54.44 16 2 C -0.05 -2.87 4.95 84.86 0.42 -2.45 16 3 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -14.12 9.65 84.04 0.81 -13.31 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 9 N -0.61 -30.23 3.04 -696.72 -2.12 -32.35 16 10 C 0.14 6.81 5.44 86.35 0.47 7.28 16 11 C 0.05 1.99 6.99 72.08 0.50 2.50 16 12 O -0.39 -13.66 10.13 -148.98 -1.51 -15.17 16 13 C 0.08 2.42 2.88 30.84 0.09 2.51 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 3.76 5.37 86.38 0.46 4.23 16 16 N -0.70 -17.38 5.45 -466.30 -2.54 -19.92 16 17 C 0.61 16.09 7.82 86.69 0.68 16.76 16 18 O -0.54 -16.43 15.93 -3.99 -0.06 -16.49 16 19 C -0.09 -2.27 7.28 24.03 0.17 -2.10 16 20 O 0.09 2.21 11.10 59.49 0.66 2.87 16 21 N -0.35 -8.61 12.03 -50.86 -0.61 -9.22 16 22 C 0.02 0.39 7.21 43.77 0.32 0.70 16 23 C -0.12 -2.56 6.03 -19.92 -0.12 -2.68 16 24 C -0.05 -0.85 5.59 29.85 0.17 -0.68 16 25 C -0.12 -1.11 5.87 30.79 0.18 -0.93 16 26 C -0.12 -0.89 5.84 30.77 0.18 -0.71 16 27 C -0.04 -0.47 6.32 30.00 0.19 -0.28 16 28 C 0.12 4.66 6.05 86.50 0.52 5.18 16 29 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.07 3.55 6.14 -2.39 -0.01 3.53 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 36 H 0.42 9.56 8.19 -92.71 -0.76 8.80 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 41 H 0.07 0.59 8.10 -2.38 -0.02 0.57 16 42 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 2.81 7.96 -2.39 -0.02 2.79 16 Total: -1.00 -67.98 373.18 1.38 -66.60 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.24 Total: 16.13 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.05 Total: 16.02 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -5.03 Total: -115.93 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.91 Total: -28.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.98 1.38 -66.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035443514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.438 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds