Wall clock time and date at job start Tue Mar 31 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99514 * 3 2 1 5 5 H 1.48494 * 109.47091 * 29.98888 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99550 * 3 2 1 7 7 C 1.38811 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99913 * 196.91095 * 7 2 1 9 9 N 1.36938 * 120.00422 * 16.90954 * 7 2 1 10 10 C 1.47153 * 120.97854 * 26.26413 * 9 7 2 11 11 C 1.53296 * 108.38428 * 129.44196 * 10 9 7 12 12 O 1.42948 * 109.26643 * 52.27482 * 11 10 9 13 13 C 1.42965 * 114.17233 * 297.50275 * 12 11 10 14 14 H 1.08999 * 109.51169 * 302.54977 * 13 12 11 15 15 C 1.52998 * 109.51457 * 182.44525 * 13 12 11 16 16 N 1.46505 * 109.47006 * 65.10022 * 15 13 12 17 17 C 1.34777 * 119.99900 * 180.02562 * 16 15 13 18 18 O 1.21499 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.48330 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31499 * 127.15155 * 0.02562 * 19 17 16 21 21 O 1.21440 * 111.52155 * 179.97438 * 20 19 17 22 22 C 1.33184 * 111.56922 * 359.94695 * 21 20 19 23 23 C 1.35381 * 106.63853 * 0.08852 * 22 21 20 24 24 C 1.50064 * 124.93636 * 179.91007 * 23 22 21 25 25 C 1.53550 * 108.23228 * 343.84373 * 24 23 22 26 26 C 1.53101 * 109.51497 * 49.20083 * 25 24 23 27 27 C 1.50595 * 129.60299 * 180.14029 * 22 21 20 28 28 C 1.47148 * 120.98354 * 206.23523 * 9 7 2 29 29 H 0.97003 * 119.99937 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68270 * 249.16744 * 10 9 7 31 31 H 1.09006 * 109.68393 * 9.68288 * 10 9 7 32 32 H 1.09002 * 109.50956 * 172.22729 * 11 10 9 33 33 H 1.09001 * 109.50897 * 292.37433 * 11 10 9 34 34 H 1.09003 * 109.47195 * 305.10016 * 15 13 12 35 35 H 1.08994 * 109.47214 * 185.09883 * 15 13 12 36 36 H 0.97003 * 120.00013 * 359.97438 * 16 15 13 37 37 H 1.09001 * 109.70943 * 224.15737 * 24 23 22 38 38 H 1.08999 * 109.74295 * 103.54738 * 24 23 22 39 39 H 1.08997 * 109.46442 * 289.18213 * 25 24 23 40 40 H 1.09001 * 109.45101 * 169.20521 * 25 24 23 41 41 H 1.08997 * 109.43200 * 50.24785 * 26 25 24 42 42 H 1.09008 * 109.42625 * 170.08964 * 26 25 24 43 43 H 1.09008 * 109.69749 * 43.46093 * 27 22 21 44 44 H 1.09003 * 109.69315 * 282.87225 * 27 22 21 45 45 H 1.09003 * 109.67526 * 110.83521 * 28 9 7 46 46 H 1.08993 * 109.71396 * 350.30379 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2223 0.2726 9 7 1.3699 -2.3626 -0.3439 10 6 0.1977 -2.3457 -1.2334 11 6 0.4256 -3.3678 -2.3529 12 8 0.7668 -4.6306 -1.7764 13 6 1.9821 -4.6212 -1.0235 14 1 2.8019 -4.2881 -1.6599 15 6 2.2753 -6.0319 -0.5088 16 7 2.5322 -6.9222 -1.6435 17 6 2.8147 -8.2225 -1.4294 18 8 2.8569 -8.6563 -0.2952 19 6 3.0742 -9.1241 -2.5783 20 7 3.0658 -8.8069 -3.8544 21 8 3.3169 -9.7673 -4.5539 22 6 3.5288 -10.8617 -3.8251 23 6 3.3817 -10.4990 -2.5291 24 6 3.5307 -11.4227 -1.3559 25 6 3.4658 -12.8678 -1.8710 26 6 4.4162 -13.0300 -3.0603 27 6 3.8693 -12.2598 -4.2693 28 6 1.8340 -3.6633 0.1641 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6955 -2.6127 -0.6687 31 1 0.0769 -1.3510 -1.6627 32 1 -0.4854 -3.4709 -2.9426 33 1 1.2392 -3.0296 -2.9945 34 1 1.4170 -6.3990 0.0541 35 1 3.1513 -6.0074 0.1393 36 1 2.4981 -6.5760 -2.5491 37 1 2.7220 -11.2488 -0.6461 38 1 4.4905 -11.2485 -0.8697 39 1 2.4475 -13.0957 -2.1860 40 1 3.7610 -13.5507 -1.0744 41 1 5.3985 -12.6390 -2.7954 42 1 4.5036 -14.0868 -3.3130 43 1 4.6254 -12.2222 -5.0536 44 1 2.9735 -12.7542 -4.6453 45 1 1.1055 -4.0630 0.8695 46 1 2.7969 -3.5420 0.6601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035529065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:24 Heat of formation + Delta-G solvation = -4.859350 kcal Electronic energy + Delta-G solvation = -28749.903390 eV Core-core repulsion = 24643.238939 eV Total energy + Delta-G solvation = -4106.664451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.33241 -39.72609 -38.47968 -38.00230 -35.00872 -34.34690 -34.11740 -31.62582 -31.32463 -30.86860 -30.39541 -27.68252 -26.08649 -24.90261 -23.87991 -23.17230 -23.10315 -21.77562 -20.85603 -20.00800 -19.43365 -18.10909 -17.92466 -16.96181 -16.69380 -16.13211 -15.87640 -15.45074 -15.01446 -14.91467 -14.45702 -14.39922 -14.28285 -14.26960 -13.82346 -13.62968 -13.52361 -13.22449 -13.08552 -12.78519 -12.75056 -12.45679 -11.75743 -11.57498 -11.44155 -11.37783 -11.14590 -11.10065 -10.88760 -10.75862 -10.46772 -10.44971 -10.31508 -10.26182 -10.00290 -9.69002 -9.39134 -9.11700 -9.08456 -8.56986 -6.78881 -5.86767 -3.30776 0.90284 1.42457 2.57316 2.90539 3.07212 3.33099 3.39966 3.41370 3.77486 4.14681 4.22911 4.29915 4.37362 4.40797 4.58950 4.67082 4.80878 4.99030 5.05170 5.06852 5.17696 5.30428 5.30871 5.38190 5.43908 5.48067 5.50097 5.57104 5.67021 5.75705 5.78384 5.84135 5.94524 5.98790 6.12544 6.23380 6.34463 6.39934 6.45818 6.71591 7.07615 7.34177 7.49305 7.68324 7.77810 7.82869 8.03043 8.30560 9.08547 9.71130 10.27885 11.21347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030584 B = 0.002080 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.297091 B =13459.753424 C =13729.732802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.703 5.703 17 C 0.596 3.404 18 O -0.524 6.524 19 C -0.014 4.014 20 N -0.335 5.335 21 O 0.128 5.872 22 C -0.041 4.041 23 C -0.152 4.152 24 C -0.045 4.045 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.035 4.035 28 C 0.123 3.877 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.410 0.590 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.031 0.969 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -26.175 -8.798 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.077 0.923 15 C 0.007 3.993 16 N -0.354 5.354 17 C 0.379 3.621 18 O -0.399 6.399 19 C -0.172 4.172 20 N -0.037 5.037 21 O 0.054 5.946 22 C -0.105 4.105 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.073 4.073 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.049 0.951 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.183 -25.257 -8.559 27.618 hybrid contribution 0.489 1.012 0.028 1.124 sum 7.672 -24.245 -8.531 26.823 Atomic orbital electron populations 1.70036 1.05273 1.25704 1.53633 1.25060 0.95375 0.98525 1.00725 0.86222 0.79071 0.83342 0.77736 1.21361 1.21653 1.20353 1.19209 0.92659 0.84432 1.42214 0.91288 1.44066 1.33601 1.00988 1.53097 1.21455 0.89130 0.98329 0.89736 1.23334 0.99085 0.84798 0.96598 1.87791 1.41180 1.32694 1.69245 1.22814 0.87727 0.93588 0.95466 0.92257 1.21537 1.01977 0.87871 0.87961 1.45850 1.69487 1.08306 1.11709 1.16830 0.77561 0.81438 0.86229 1.90785 1.51971 1.75521 1.21666 1.23070 1.06899 0.94985 0.92261 1.74603 1.16225 1.09031 1.03830 1.84689 1.62953 1.13127 1.33803 1.24140 1.04004 0.92089 0.90268 1.20662 1.05651 0.93029 0.96356 1.20011 1.03854 0.91028 0.93379 1.21726 1.00215 0.96196 0.98022 1.21657 0.99690 1.00345 0.93970 1.20269 1.02662 0.84923 0.99408 1.21430 0.99023 0.87203 0.92813 0.93463 0.95312 0.88707 0.89983 0.94067 0.90171 0.89648 0.75518 0.89137 0.89811 0.91310 0.90531 0.90979 0.90010 0.88825 0.88672 0.95128 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.14 55.49 0.62 -25.38 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.59 -14.91 3.05 -171.83 -0.52 -15.44 16 10 C 0.14 3.34 5.45 -3.53 -0.02 3.32 16 11 C 0.04 0.78 6.98 37.31 0.26 1.04 16 12 O -0.39 -7.54 10.33 -35.23 -0.36 -7.90 16 13 C 0.06 1.14 2.81 -26.58 -0.07 1.07 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.13 2.02 5.34 -4.04 -0.02 2.00 16 16 N -0.70 -10.46 5.50 -61.09 -0.34 -10.79 16 17 C 0.60 9.12 7.85 -12.11 -0.10 9.02 16 18 O -0.52 -8.97 16.09 5.37 0.09 -8.88 16 19 C -0.01 -0.19 7.19 -82.82 -0.60 -0.78 16 20 N -0.33 -4.43 11.89 33.29 0.40 -4.03 16 21 O 0.13 1.41 11.18 19.20 0.21 1.63 16 22 C -0.04 -0.37 7.38 -35.38 -0.26 -0.63 16 23 C -0.15 -1.67 6.04 -104.91 -0.63 -2.31 16 24 C -0.05 -0.41 5.66 -27.91 -0.16 -0.56 16 25 C -0.12 -0.70 5.92 -26.39 -0.16 -0.85 16 26 C -0.12 -0.50 5.88 -26.46 -0.16 -0.65 16 27 C -0.03 -0.16 6.31 -27.71 -0.17 -0.34 16 28 C 0.12 2.56 6.02 -3.54 -0.02 2.54 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.48 6.14 -51.93 -0.32 2.17 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.89 8.25 -40.82 -0.34 5.55 16 37 H 0.09 0.93 7.84 -51.93 -0.41 0.53 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 42 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 43 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -32.17 373.84 -8.58 -40.75 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.94 Total: 2.24 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.34 Total: 5.72 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.15 Total: -55.65 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.06 Total: -15.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.17 -8.58 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035529065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.892 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds