Wall clock time and date at job start Tue Mar 31 2020 18:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99514 * 3 2 1 5 5 H 1.48494 * 109.47091 * 29.98888 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99550 * 3 2 1 7 7 C 1.38811 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99913 * 196.91095 * 7 2 1 9 9 N 1.36938 * 120.00422 * 16.90954 * 7 2 1 10 10 C 1.47153 * 120.97854 * 26.26413 * 9 7 2 11 11 C 1.53296 * 108.38428 * 129.44196 * 10 9 7 12 12 O 1.42948 * 109.26643 * 52.27482 * 11 10 9 13 13 C 1.42965 * 114.17233 * 297.50275 * 12 11 10 14 14 H 1.08999 * 109.51169 * 302.54977 * 13 12 11 15 15 C 1.52998 * 109.51457 * 182.44525 * 13 12 11 16 16 N 1.46505 * 109.47006 * 65.10022 * 15 13 12 17 17 C 1.34777 * 119.99900 * 180.02562 * 16 15 13 18 18 O 1.21499 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.48330 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31499 * 127.15155 * 0.02562 * 19 17 16 21 21 O 1.21440 * 111.52155 * 179.97438 * 20 19 17 22 22 C 1.33184 * 111.56922 * 359.94695 * 21 20 19 23 23 C 1.35381 * 106.63853 * 0.08852 * 22 21 20 24 24 C 1.50064 * 124.93636 * 179.91007 * 23 22 21 25 25 C 1.53550 * 108.23228 * 343.84373 * 24 23 22 26 26 C 1.53101 * 109.51497 * 49.20083 * 25 24 23 27 27 C 1.50595 * 129.60299 * 180.14029 * 22 21 20 28 28 C 1.47148 * 120.98354 * 206.23523 * 9 7 2 29 29 H 0.97003 * 119.99937 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68270 * 249.16744 * 10 9 7 31 31 H 1.09006 * 109.68393 * 9.68288 * 10 9 7 32 32 H 1.09002 * 109.50956 * 172.22729 * 11 10 9 33 33 H 1.09001 * 109.50897 * 292.37433 * 11 10 9 34 34 H 1.09003 * 109.47195 * 305.10016 * 15 13 12 35 35 H 1.08994 * 109.47214 * 185.09883 * 15 13 12 36 36 H 0.97003 * 120.00013 * 359.97438 * 16 15 13 37 37 H 1.09001 * 109.70943 * 224.15737 * 24 23 22 38 38 H 1.08999 * 109.74295 * 103.54738 * 24 23 22 39 39 H 1.08997 * 109.46442 * 289.18213 * 25 24 23 40 40 H 1.09001 * 109.45101 * 169.20521 * 25 24 23 41 41 H 1.08997 * 109.43200 * 50.24785 * 26 25 24 42 42 H 1.09008 * 109.42625 * 170.08964 * 26 25 24 43 43 H 1.09008 * 109.69749 * 43.46093 * 27 22 21 44 44 H 1.09003 * 109.69315 * 282.87225 * 27 22 21 45 45 H 1.09003 * 109.67526 * 110.83521 * 28 9 7 46 46 H 1.08993 * 109.71396 * 350.30379 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2223 0.2726 9 7 1.3699 -2.3626 -0.3439 10 6 0.1977 -2.3457 -1.2334 11 6 0.4256 -3.3678 -2.3529 12 8 0.7668 -4.6306 -1.7764 13 6 1.9821 -4.6212 -1.0235 14 1 2.8019 -4.2881 -1.6599 15 6 2.2753 -6.0319 -0.5088 16 7 2.5322 -6.9222 -1.6435 17 6 2.8147 -8.2225 -1.4294 18 8 2.8569 -8.6563 -0.2952 19 6 3.0742 -9.1241 -2.5783 20 7 3.0658 -8.8069 -3.8544 21 8 3.3169 -9.7673 -4.5539 22 6 3.5288 -10.8617 -3.8251 23 6 3.3817 -10.4990 -2.5291 24 6 3.5307 -11.4227 -1.3559 25 6 3.4658 -12.8678 -1.8710 26 6 4.4162 -13.0300 -3.0603 27 6 3.8693 -12.2598 -4.2693 28 6 1.8340 -3.6633 0.1641 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6955 -2.6127 -0.6687 31 1 0.0769 -1.3510 -1.6627 32 1 -0.4854 -3.4709 -2.9426 33 1 1.2392 -3.0296 -2.9945 34 1 1.4170 -6.3990 0.0541 35 1 3.1513 -6.0074 0.1393 36 1 2.4981 -6.5760 -2.5491 37 1 2.7220 -11.2488 -0.6461 38 1 4.4905 -11.2485 -0.8697 39 1 2.4475 -13.0957 -2.1860 40 1 3.7610 -13.5507 -1.0744 41 1 5.3985 -12.6390 -2.7954 42 1 4.5036 -14.0868 -3.3130 43 1 4.6254 -12.2222 -5.0536 44 1 2.9735 -12.7542 -4.6453 45 1 1.1055 -4.0630 0.8695 46 1 2.7969 -3.5420 0.6601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035529065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:23 Heat of formation + Delta-G solvation = -26.281561 kcal Electronic energy + Delta-G solvation = -28750.832327 eV Core-core repulsion = 24643.238939 eV Total energy + Delta-G solvation = -4107.593388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.22420 -41.00320 -40.03889 -38.58468 -36.60430 -35.94098 -35.01597 -33.41401 -32.43853 -31.99395 -31.17569 -29.37645 -27.65360 -25.83505 -25.10141 -24.73902 -23.75196 -23.27057 -21.97359 -21.36494 -20.46838 -19.06523 -18.94411 -18.68519 -17.74702 -17.61484 -17.22472 -16.87526 -16.28496 -16.11812 -15.98776 -15.61198 -15.50546 -15.07558 -14.86473 -14.78696 -14.71352 -14.57010 -14.22342 -14.16807 -13.85232 -13.28123 -13.24838 -13.05266 -12.74035 -12.57779 -12.49908 -12.21436 -12.12217 -11.93311 -11.90940 -11.85482 -11.69711 -11.44792 -11.33659 -11.31147 -10.85680 -10.59297 -10.35351 -10.12726 -8.80262 -7.94426 -5.42233 -0.04454 0.59994 1.45140 1.46186 1.55422 1.68531 1.93168 1.95459 2.44824 2.68314 2.81374 3.20496 3.42195 3.47016 3.64031 3.86248 3.92978 3.97368 4.01040 4.08050 4.17892 4.24330 4.37139 4.40595 4.44464 4.49245 4.53420 4.59280 4.65129 4.68415 4.82893 4.89725 4.94400 4.98451 5.02253 5.10600 5.18748 5.19346 5.20430 5.34969 5.45277 5.51099 5.57471 6.15844 6.19303 6.28292 6.78230 6.96325 7.02319 7.70026 8.23907 9.11836 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030584 B = 0.002080 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.297091 B =13459.753424 C =13729.732802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.144 3.856 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.077 3.923 14 H 0.067 0.933 15 C 0.140 3.860 16 N -0.700 5.700 17 C 0.596 3.404 18 O -0.548 6.548 19 C -0.040 4.040 20 N -0.354 5.354 21 O 0.133 5.867 22 C -0.021 4.021 23 C -0.172 4.172 24 C -0.046 4.046 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.035 4.035 28 C 0.119 3.881 29 H 0.252 0.748 30 H 0.001 0.999 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.413 0.587 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.022 0.978 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -28.498 -10.424 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.801 3.199 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.018 3.982 11 C -0.024 4.024 12 O -0.312 6.312 13 C 0.018 3.982 14 H 0.084 0.916 15 C 0.017 3.983 16 N -0.351 5.351 17 C 0.381 3.619 18 O -0.425 6.425 19 C -0.197 4.197 20 N -0.056 5.056 21 O 0.058 5.942 22 C -0.086 4.086 23 C -0.177 4.177 24 C -0.084 4.084 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.073 4.073 28 C -0.008 4.008 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.040 0.960 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.830 -27.595 -10.191 30.714 hybrid contribution -0.016 1.645 0.546 1.733 sum 8.814 -25.951 -9.645 29.054 Atomic orbital electron populations 1.70192 1.06738 1.26130 1.55057 1.25860 0.96149 1.01715 1.00943 0.85177 0.78011 0.79029 0.77681 1.20935 1.22172 1.19206 1.19559 0.93054 0.85479 1.41573 0.90872 1.44340 1.33674 1.01939 1.53782 1.21307 0.88042 0.98311 0.90536 1.23177 1.00661 0.83610 0.95000 1.87805 1.41867 1.32234 1.69257 1.22674 0.87398 0.94139 0.94036 0.91551 1.21363 1.02243 0.86590 0.88140 1.45772 1.69440 1.08281 1.11568 1.17056 0.76858 0.81476 0.86543 1.90762 1.53076 1.75943 1.22759 1.23005 1.08689 0.95975 0.91998 1.74582 1.17151 1.10139 1.03708 1.84654 1.62285 1.13502 1.33717 1.24951 1.01367 0.92899 0.89350 1.20976 1.06487 0.92288 0.97996 1.20055 1.02689 0.93088 0.92522 1.21736 1.01012 0.93753 0.99232 1.21697 0.98826 1.01947 0.92833 1.20633 1.04353 0.81947 1.00332 1.21576 0.99068 0.86133 0.94001 0.93883 0.98109 0.91281 0.87384 0.93258 0.90988 0.88328 0.75127 0.91334 0.90264 0.91056 0.89141 0.91307 0.87062 0.86462 0.86489 0.96027 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 11.14 21.65 0.24 -55.04 16 2 C -0.05 -2.84 4.95 84.86 0.42 -2.43 16 3 Si 0.97 44.52 29.59 68.60 2.03 46.55 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.27 -14.63 9.65 84.03 0.81 -13.81 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.61 -31.17 3.05 -697.55 -2.13 -33.30 16 10 C 0.14 7.05 5.45 86.35 0.47 7.52 16 11 C 0.05 2.05 6.98 72.08 0.50 2.56 16 12 O -0.39 -14.87 10.33 -148.98 -1.54 -16.41 16 13 C 0.08 2.71 2.81 30.69 0.09 2.79 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.14 4.30 5.34 86.38 0.46 4.76 16 16 N -0.70 -20.65 5.50 -465.50 -2.56 -23.21 16 17 C 0.60 18.42 7.85 86.93 0.68 19.10 16 18 O -0.55 -19.14 16.09 -3.71 -0.06 -19.20 16 19 C -0.04 -1.09 7.19 42.55 0.31 -0.79 16 20 N -0.35 -9.18 11.89 -48.94 -0.58 -9.76 16 21 O 0.13 2.75 11.18 78.73 0.88 3.63 16 22 C -0.02 -0.34 7.38 24.99 0.18 -0.15 16 23 C -0.17 -3.67 6.04 -20.05 -0.12 -3.79 16 24 C -0.05 -0.80 5.66 29.83 0.17 -0.64 16 25 C -0.12 -1.07 5.92 30.81 0.18 -0.89 16 26 C -0.12 -0.55 5.88 30.77 0.18 -0.37 16 27 C -0.04 -0.20 6.31 29.96 0.19 -0.01 16 28 C 0.12 4.97 6.02 86.35 0.52 5.49 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.07 3.73 6.14 -2.38 -0.01 3.72 16 32 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 36 H 0.41 11.67 8.25 -92.71 -0.76 10.91 16 37 H 0.07 1.47 7.84 -2.39 -0.02 1.45 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 42 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 43 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 44 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 2.96 7.96 -2.39 -0.02 2.94 16 Total: -1.00 -71.24 373.84 1.56 -69.68 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.24 Total: 17.70 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 5.04 Total: 19.35 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.03 Total: -121.31 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.72 Total: -31.97 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -71.24 1.56 -69.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035529065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.398 kcal (2) G-P(sol) polarization free energy of solvation -71.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds