Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00549 * 2 1 4 4 H 1.48499 * 109.47335 * 270.00160 * 3 2 1 5 5 H 1.48508 * 109.47008 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.47658 * 149.99816 * 3 2 1 7 7 C 1.38819 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 196.90715 * 7 2 1 9 9 N 1.36928 * 119.99746 * 16.91138 * 7 2 1 10 10 C 1.47157 * 120.98356 * 206.24790 * 9 7 2 11 11 C 1.53294 * 108.38700 * 230.51464 * 10 9 7 12 12 O 1.42956 * 109.26276 * 307.71823 * 11 10 9 13 13 C 1.42959 * 114.16966 * 62.50085 * 12 11 10 14 14 H 1.08999 * 109.51732 * 57.45109 * 13 12 11 15 15 C 1.53006 * 109.51430 * 177.55443 * 13 12 11 16 16 N 1.46501 * 109.46905 * 299.89664 * 15 13 12 17 17 C 1.34773 * 120.00124 * 180.02562 * 16 15 13 18 18 O 1.21496 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.48336 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31499 * 127.15476 * 359.68951 * 19 17 16 21 21 O 1.21430 * 111.52329 * 180.26481 * 20 19 17 22 22 C 1.33183 * 111.57225 * 359.94111 * 21 20 19 23 23 C 1.35374 * 106.63527 * 0.08424 * 22 21 20 24 24 C 1.50067 * 124.93975 * 179.82271 * 23 22 21 25 25 C 1.53550 * 108.22937 * 343.87783 * 24 23 22 26 26 C 1.53098 * 109.51373 * 49.19797 * 25 24 23 27 27 C 1.50596 * 129.60345 * 180.10768 * 22 21 20 28 28 C 1.47154 * 120.98597 * 26.22442 * 9 7 2 29 29 H 0.97002 * 119.99221 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.68034 * 350.23116 * 10 9 7 31 31 H 1.08998 * 109.68539 * 110.75057 * 10 9 7 32 32 H 1.09005 * 109.51615 * 67.61508 * 11 10 9 33 33 H 1.08994 * 109.51791 * 187.71752 * 11 10 9 34 34 H 1.09005 * 109.47326 * 179.89771 * 15 13 12 35 35 H 1.08994 * 109.47097 * 59.89493 * 15 13 12 36 36 H 0.97002 * 119.99646 * 359.97438 * 16 15 13 37 37 H 1.08992 * 109.71412 * 103.56359 * 24 23 22 38 38 H 1.09000 * 109.70625 * 224.15579 * 24 23 22 39 39 H 1.09001 * 109.46289 * 169.21317 * 25 24 23 40 40 H 1.09005 * 109.46155 * 289.18440 * 25 24 23 41 41 H 1.09003 * 109.43101 * 50.23849 * 26 25 24 42 42 H 1.09003 * 109.43165 * 170.13126 * 26 25 24 43 43 H 1.08991 * 109.70050 * 43.54206 * 27 22 21 44 44 H 1.08999 * 109.73212 * 282.96914 * 27 22 21 45 45 H 1.09004 * 109.68215 * 9.76196 * 28 9 7 46 46 H 1.09003 * 109.68240 * 249.20967 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2224 0.2726 9 7 1.3699 -2.3625 -0.3439 10 6 1.8337 -3.6634 0.1642 11 6 1.9809 -4.6217 -1.0232 12 8 0.7651 -4.6310 -1.7752 13 6 0.4241 -3.3681 -2.3520 14 1 1.2368 -3.0300 -2.9948 15 6 -0.8552 -3.5128 -3.1789 16 7 -0.6382 -4.4919 -4.2468 17 6 -1.6343 -4.7832 -5.1066 18 8 -2.7124 -4.2341 -4.9958 19 6 -1.4144 -5.7742 -6.1883 20 7 -0.3108 -6.4434 -6.4400 21 8 -0.4436 -7.1775 -7.3980 22 6 -1.6684 -7.0923 -7.9141 23 6 -2.3433 -6.1901 -7.1637 24 6 -3.7680 -5.7773 -7.3909 25 6 -4.1763 -6.2178 -8.8041 26 6 -3.7933 -7.6853 -9.0130 27 6 -2.2665 -7.8162 -9.0915 28 6 0.1972 -2.3456 -1.2327 29 1 -0.4849 0.8401 -0.0004 30 1 2.7972 -3.5417 0.6592 31 1 1.1059 -4.0623 0.8707 32 1 2.7999 -4.2886 -1.6607 33 1 2.1906 -5.6264 -0.6564 34 1 -1.1156 -2.5492 -3.6169 35 1 -1.6674 -3.8509 -2.5355 36 1 0.2227 -4.9301 -4.3355 37 1 -4.4121 -6.2589 -6.6553 38 1 -3.8554 -4.6944 -7.3031 39 1 -5.2536 -6.1030 -8.9233 40 1 -3.6617 -5.5998 -9.5400 41 1 -4.1656 -8.2796 -8.1784 42 1 -4.2356 -8.0469 -9.9413 43 1 -1.9859 -8.8688 -9.0569 44 1 -1.9069 -7.3706 -10.0189 45 1 0.0768 -1.3512 -1.6627 46 1 -0.6958 -2.6122 -0.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035529068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = -4.831088 kcal Electronic energy + Delta-G solvation = -28949.015583 eV Core-core repulsion = 24842.352357 eV Total energy + Delta-G solvation = -4106.663226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.28151 -39.62542 -38.45201 -37.95657 -34.89971 -34.35647 -34.06771 -31.41599 -31.27796 -31.04955 -30.39754 -27.52109 -26.11042 -24.85857 -23.81576 -23.25836 -23.06305 -21.65245 -20.76835 -19.94675 -19.41198 -18.05349 -17.86896 -16.99311 -16.65832 -16.04836 -15.70076 -15.41796 -15.13645 -14.77835 -14.41285 -14.34570 -14.27881 -14.15207 -13.88207 -13.55930 -13.47352 -13.27507 -12.94042 -12.84125 -12.71944 -12.31388 -11.70930 -11.53993 -11.39892 -11.33048 -11.12655 -11.05271 -10.87090 -10.76449 -10.45974 -10.40083 -10.27420 -10.22576 -10.01062 -9.67905 -9.34228 -9.11667 -8.96839 -8.57690 -6.79036 -5.87193 -3.31001 0.96233 1.48494 2.62529 3.00285 3.16110 3.33326 3.40192 3.41570 3.84119 4.18165 4.27546 4.35191 4.41369 4.41853 4.63817 4.72344 4.86245 5.03258 5.09685 5.14316 5.22355 5.33097 5.35351 5.42186 5.51898 5.54716 5.58079 5.61735 5.71789 5.83756 5.88522 5.90931 5.96970 6.01228 6.08195 6.18972 6.31177 6.45762 6.56061 6.76096 7.03726 7.43630 7.45412 7.68594 7.81180 7.84615 8.13570 8.30213 9.07953 9.70815 10.27897 11.20994 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002344 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.818383 B =11944.794858 C =12611.190861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.054 3.946 14 H 0.057 0.943 15 C 0.132 3.868 16 N -0.701 5.701 17 C 0.594 3.406 18 O -0.524 6.524 19 C -0.012 4.012 20 N -0.336 5.336 21 O 0.127 5.873 22 C -0.042 4.042 23 C -0.152 4.152 24 C -0.046 4.046 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.034 4.034 28 C 0.153 3.847 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -16.289 -19.317 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.075 0.925 15 C 0.009 3.991 16 N -0.352 5.352 17 C 0.377 3.623 18 O -0.399 6.399 19 C -0.171 4.171 20 N -0.038 5.038 21 O 0.054 5.946 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.072 4.072 28 C 0.026 3.974 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.436 -15.848 -18.557 25.002 hybrid contribution 0.468 1.036 0.021 1.137 sum -4.967 -14.812 -18.536 24.242 Atomic orbital electron populations 1.70018 1.05248 1.25799 1.53522 1.25068 0.95380 0.98537 1.00657 0.86235 0.79071 0.83379 0.77763 1.21334 1.21613 1.20380 1.19203 0.92672 0.84454 1.42250 0.91288 1.44045 1.33719 1.01428 1.52609 1.21607 0.98660 0.87502 0.93955 1.23011 0.86136 0.99667 0.93971 1.87778 1.42295 1.31439 1.69449 1.23163 0.94870 0.86617 0.95881 0.92525 1.21543 0.98174 0.92118 0.87292 1.45868 1.15444 1.43562 1.30360 1.16848 0.84555 0.80689 0.80206 1.90790 1.24675 1.51837 1.72561 1.23107 0.91350 1.01886 1.00719 1.74591 1.22110 1.05061 1.02034 1.84680 1.30036 1.47632 1.32300 1.24125 0.85038 1.01037 1.00427 1.20667 0.99356 0.99690 0.95955 1.20016 0.88618 1.02730 0.96957 1.21724 1.01908 0.95874 0.96623 1.21660 0.93222 0.97594 1.03190 1.20258 0.94956 1.00030 0.91970 1.21309 0.89558 0.97528 0.88964 0.93372 0.91917 0.95497 0.93829 0.89957 0.89518 0.90248 0.75625 0.89789 0.89096 0.90539 0.91342 0.90964 0.90041 0.88865 0.88723 0.88507 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.14 55.49 0.62 -25.28 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.59 -14.92 3.05 -171.82 -0.52 -15.44 16 10 C 0.11 2.29 6.74 -3.53 -0.02 2.27 16 11 C 0.05 0.90 6.98 37.31 0.26 1.16 16 12 O -0.39 -7.53 10.14 -35.23 -0.36 -7.88 16 13 C 0.05 1.05 2.86 -26.57 -0.08 0.98 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 15 C 0.13 2.32 5.37 -4.04 -0.02 2.30 16 16 N -0.70 -11.32 5.45 -61.09 -0.33 -11.66 16 17 C 0.59 9.76 7.85 -12.11 -0.10 9.67 16 18 O -0.52 -9.65 16.08 5.37 0.09 -9.57 16 19 C -0.01 -0.18 7.19 -82.82 -0.60 -0.77 16 20 N -0.34 -4.63 11.89 33.29 0.40 -4.24 16 21 O 0.13 1.46 11.18 19.21 0.21 1.68 16 22 C -0.04 -0.40 7.38 -35.38 -0.26 -0.66 16 23 C -0.15 -1.77 6.04 -104.91 -0.63 -2.41 16 24 C -0.05 -0.44 5.67 -27.90 -0.16 -0.60 16 25 C -0.12 -0.76 5.92 -26.39 -0.16 -0.92 16 26 C -0.12 -0.56 5.88 -26.46 -0.16 -0.71 16 27 C -0.03 -0.18 6.31 -27.71 -0.17 -0.35 16 28 C 0.15 3.63 4.73 -3.53 -0.02 3.62 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.41 6.28 8.13 -40.82 -0.33 5.95 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.01 7.82 -51.93 -0.41 0.60 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 2.51 6.14 -51.93 -0.32 2.19 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -32.06 373.52 -8.57 -40.63 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.94 Total: 3.25 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.34 Total: 6.42 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.16 Total: -56.61 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.06 Total: -15.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.06 -8.57 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035529068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.798 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds