Wall clock time and date at job start Tue Mar 31 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99692 * 2 1 4 4 H 1.48497 * 109.47224 * 269.99892 * 3 2 1 5 5 H 1.48496 * 109.47502 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.47038 * 150.00210 * 3 2 1 7 7 C 1.38811 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00453 * 193.58373 * 7 2 1 9 9 N 1.37089 * 119.99575 * 13.58708 * 7 2 1 10 10 C 1.44811 * 120.03366 * 206.79217 * 9 7 2 11 11 C 1.51438 * 113.00389 * 268.00917 * 10 9 7 12 12 C 1.51202 * 114.16157 * 295.74354 * 11 10 9 13 13 H 1.09718 * 110.70688 * 178.96449 * 12 11 10 14 14 C 1.54136 * 108.43574 * 300.88733 * 12 11 10 15 15 C 1.53994 * 104.80608 * 92.73969 * 14 12 11 16 16 C 1.52097 * 105.55253 * 11.48567 * 15 14 12 17 17 H 1.09407 * 108.27181 * 123.23148 * 16 15 14 18 18 C 1.49282 * 120.08214 * 26.51782 * 9 7 2 19 19 N 1.47752 * 109.49526 * 5.44532 * 16 15 14 20 20 C 1.34995 * 127.12840 * 158.62901 * 19 16 15 21 21 O 1.21278 * 119.99880 * 180.02562 * 20 19 16 22 22 C 1.50701 * 120.00113 * 0.02562 * 20 19 16 23 23 N 1.46498 * 109.47116 * 180.02562 * 22 20 19 24 24 C 1.33879 * 122.76264 * 89.99944 * 23 22 20 25 25 O 1.21230 * 125.39748 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.20410 * 180.24379 * 24 23 22 27 27 C 1.54222 * 103.55574 * 359.63179 * 26 24 23 28 28 C 1.33872 * 122.76241 * 270.00006 * 23 22 20 29 29 O 1.21229 * 125.39487 * 0.02562 * 28 23 22 30 30 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 31 31 H 1.08873 * 109.21771 * 146.10490 * 10 9 7 32 32 H 1.09335 * 108.44213 * 28.41421 * 10 9 7 33 33 H 1.09315 * 108.48656 * 174.58768 * 11 10 9 34 34 H 1.09161 * 108.74905 * 57.44476 * 11 10 9 35 35 H 1.09308 * 110.65899 * 333.52887 * 14 12 11 36 36 H 1.09339 * 110.59433 * 211.86075 * 14 12 11 37 37 H 1.09058 * 110.64113 * 251.89304 * 15 14 12 38 38 H 1.09281 * 110.26047 * 130.41335 * 15 14 12 39 39 H 1.09115 * 109.54515 * 14.69905 * 18 9 7 40 40 H 1.09133 * 109.51887 * 255.01825 * 18 9 7 41 41 H 1.09004 * 109.47144 * 59.99731 * 22 20 19 42 42 H 1.09001 * 109.47066 * 300.00173 * 22 20 19 43 43 H 1.08999 * 110.60770 * 118.27950 * 26 24 23 44 44 H 1.09000 * 110.60311 * 241.23592 * 26 24 23 45 45 H 1.09005 * 110.80473 * 241.73196 * 27 26 24 46 46 H 1.09005 * 110.54257 * 118.83499 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0676 -1.2153 0.2191 9 7 1.3536 -2.3726 -0.2800 10 6 1.8471 -3.6255 0.2527 11 6 2.8016 -4.3328 -0.6864 12 6 2.1740 -4.7758 -1.9887 13 1 2.9174 -5.2636 -2.6315 14 6 1.0098 -5.7337 -1.6678 15 6 -0.2353 -4.8302 -1.5979 16 6 0.2045 -3.4857 -2.1567 17 1 -0.4506 -3.2320 -2.9954 18 6 0.1255 -2.3574 -1.1286 19 7 1.5872 -3.5921 -2.6664 20 6 2.1873 -2.7869 -3.5686 21 8 3.3361 -2.9946 -3.8971 22 6 1.4297 -1.6300 -4.1674 23 7 2.2939 -0.9164 -5.1109 24 6 2.3620 -1.2300 -6.4107 25 8 1.7372 -2.1162 -6.9529 26 6 3.3474 -0.3074 -7.0943 27 6 3.8350 0.6096 -5.9542 28 6 3.0805 0.1030 -4.7444 29 8 3.1738 0.5492 -3.6211 30 1 -0.4850 0.8401 -0.0004 31 1 1.0041 -4.2796 0.4693 32 1 2.3698 -3.4205 1.1909 33 1 3.2012 -5.2131 -0.1761 34 1 3.6361 -3.6647 -0.9071 35 1 1.1751 -6.2344 -0.7103 36 1 0.8974 -6.4807 -2.4582 37 1 -0.5753 -4.7232 -0.5672 38 1 -1.0399 -5.2467 -2.2090 39 1 0.0488 -1.3979 -1.6425 40 1 -0.7546 -2.4975 -0.4987 41 1 1.1178 -0.9504 -3.3743 42 1 0.5505 -2.0040 -4.6920 43 1 4.1776 -0.8757 -7.5138 44 1 2.8514 0.2774 -7.8690 45 1 3.5798 1.6496 -6.1577 46 1 4.9099 0.5009 -5.8091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039468077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:15 Heat of formation + Delta-G solvation = -55.548923 kcal Electronic energy + Delta-G solvation = -31976.293088 eV Core-core repulsion = 27867.430572 eV Total energy + Delta-G solvation = -4108.862516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75983 -40.05242 -38.35455 -37.62712 -35.60783 -34.59179 -33.46526 -32.61391 -31.27864 -31.00680 -27.76473 -27.04854 -26.11083 -25.39059 -23.93612 -22.25996 -22.07232 -20.96933 -19.75759 -19.12210 -18.34359 -17.51009 -17.05027 -16.55427 -16.30566 -16.10143 -15.40049 -15.11804 -14.63013 -14.42720 -14.35721 -14.04123 -13.80431 -13.70920 -13.43537 -13.24152 -13.13349 -13.01452 -12.71722 -12.50886 -12.18304 -11.98976 -11.67744 -11.46204 -11.41135 -11.19641 -10.88247 -10.73054 -10.65869 -10.50898 -10.42491 -10.15078 -10.04473 -10.01409 -9.85694 -9.77910 -9.39940 -9.13385 -8.42209 -8.03807 -6.67302 -5.75921 -3.17181 1.68607 2.48117 2.88139 3.09812 3.49214 3.52789 3.54935 3.65185 4.09844 4.25165 4.43556 4.57621 4.71100 4.80384 4.92155 5.09371 5.20336 5.26971 5.34244 5.39934 5.46207 5.51486 5.52879 5.56440 5.64280 5.65185 5.70569 5.73060 5.93856 6.03850 6.09155 6.21086 6.34799 6.44612 6.48126 6.58708 6.76210 6.84147 6.96704 7.01128 7.25469 7.45093 7.47110 7.86139 7.92594 8.09604 8.46395 8.61445 9.23223 9.89183 10.39580 11.33161 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.006899 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.010928 B = 4057.538315 C = 5977.276533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.009 3.991 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.061 0.939 9 N -0.582 5.582 10 C 0.158 3.842 11 C -0.154 4.154 12 C 0.148 3.852 13 H 0.077 0.923 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.098 3.902 17 H 0.061 0.939 18 C 0.164 3.836 19 N -0.583 5.583 20 C 0.542 3.458 21 O -0.553 6.553 22 C 0.084 3.916 23 N -0.556 5.556 24 C 0.531 3.469 25 O -0.491 6.491 26 C -0.153 4.153 27 C -0.154 4.154 28 C 0.518 3.482 29 O -0.450 6.450 30 H 0.252 0.748 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -4.828 -11.335 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.304 5.304 10 C 0.030 3.970 11 C -0.195 4.195 12 C 0.045 3.955 13 H 0.096 0.904 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.007 4.007 17 H 0.079 0.921 18 C 0.038 3.962 19 N -0.316 5.316 20 C 0.329 3.671 21 O -0.432 6.432 22 C -0.041 4.041 23 N -0.298 5.298 24 C 0.321 3.679 25 O -0.364 6.364 26 C -0.192 4.192 27 C -0.194 4.194 28 C 0.305 3.695 29 O -0.318 6.318 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.152 0.848 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.389 -4.931 -11.197 12.313 hybrid contribution 0.430 0.854 0.149 0.968 sum 1.819 -4.077 -11.048 11.916 Atomic orbital electron populations 1.69991 1.05065 1.25296 1.55326 1.24886 0.95265 0.98077 1.00603 0.86416 0.78855 0.83714 0.78743 1.19677 1.22285 1.20855 1.19119 0.91498 0.84352 1.42204 0.92140 1.43887 1.29149 1.01778 1.55596 1.19994 0.94939 0.88194 0.93861 1.22088 1.01078 1.00050 0.96254 1.21508 0.95108 0.85398 0.93502 0.90442 1.22473 0.94667 0.97127 1.01966 1.22039 0.97206 0.93999 1.02347 1.22374 0.82087 0.97980 0.98246 0.92079 1.21682 0.89207 0.95052 0.90282 1.48557 1.14278 1.28357 1.40375 1.19879 0.86638 0.82316 0.78251 1.90632 1.17448 1.72419 1.62733 1.21594 0.92963 0.95095 0.94414 1.46297 1.40769 1.32086 1.10686 1.20761 0.81972 0.83553 0.81642 1.90741 1.45753 1.30762 1.69110 1.22415 0.99879 0.97901 0.99038 1.22435 1.03016 1.01869 0.92047 1.20843 0.79056 0.78866 0.90686 1.90955 1.61178 1.57848 1.21860 0.93840 0.94890 0.93852 0.92683 0.92333 0.90176 0.91790 0.89895 0.91450 0.89805 0.94285 0.84838 0.86849 0.86279 0.86392 0.86358 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.57 10.99 55.49 0.61 -24.96 16 2 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 3 Si 0.89 22.92 29.58 -169.99 -5.03 17.89 16 4 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.68 9.58 -14.99 -0.14 -6.82 16 8 H 0.06 1.75 7.87 -52.49 -0.41 1.34 16 9 N -0.58 -13.93 2.59 -173.05 -0.45 -14.38 16 10 C 0.16 3.22 5.25 -5.73 -0.03 3.19 16 11 C -0.15 -2.82 5.03 -28.43 -0.14 -2.96 16 12 C 0.15 2.54 3.55 -67.15 -0.24 2.30 16 13 H 0.08 1.36 8.09 -51.52 -0.42 0.94 16 14 C -0.12 -1.67 5.99 -25.62 -0.15 -1.82 16 15 C -0.12 -1.66 5.73 -26.67 -0.15 -1.81 16 16 C 0.10 1.71 2.57 -67.78 -0.17 1.54 16 17 H 0.06 0.96 7.69 -51.70 -0.40 0.56 16 18 C 0.16 3.56 4.55 -2.57 -0.01 3.55 16 19 N -0.58 -11.11 2.30 -156.58 -0.36 -11.47 16 20 C 0.54 11.26 7.95 -10.89 -0.09 11.18 16 21 O -0.55 -12.90 16.77 5.56 0.09 -12.80 16 22 C 0.08 1.55 5.14 -5.19 -0.03 1.52 16 23 N -0.56 -9.34 2.04 -116.63 -0.24 -9.57 16 24 C 0.53 7.77 8.08 -11.08 -0.09 7.68 16 25 O -0.49 -8.48 17.48 5.60 0.10 -8.38 16 26 C -0.15 -1.38 7.03 -26.94 -0.19 -1.56 16 27 C -0.15 -1.54 7.03 -26.94 -0.19 -1.73 16 28 C 0.52 8.69 8.08 -11.09 -0.09 8.60 16 29 O -0.45 -9.89 17.48 5.60 0.10 -9.79 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.03 0.61 5.57 -52.00 -0.29 0.32 16 32 H 0.04 0.92 8.00 -51.74 -0.41 0.51 16 33 H 0.05 0.85 8.14 -51.75 -0.42 0.43 16 34 H 0.06 1.28 8.16 -51.84 -0.42 0.85 16 35 H 0.08 0.97 7.66 -51.76 -0.40 0.57 16 36 H 0.06 0.76 8.17 -51.74 -0.42 0.34 16 37 H 0.08 1.20 6.50 -51.90 -0.34 0.86 16 38 H 0.07 0.80 8.17 -51.77 -0.42 0.38 16 39 H 0.08 2.05 5.15 -51.86 -0.27 1.78 16 40 H 0.04 0.89 7.87 -51.85 -0.41 0.48 16 41 H 0.13 2.75 6.61 -51.93 -0.34 2.41 16 42 H 0.11 1.81 7.62 -51.93 -0.40 1.42 16 43 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -36.06 363.23 -8.10 -44.16 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.59 Total: 0.83 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: -1.81 Total: 23.00 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.44 Total: -60.39 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: 0.29 Total: -30.98 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.06 -8.10 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039468077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.387 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds