Wall clock time and date at job start Tue Mar 31 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99692 * 2 1 4 4 H 1.48497 * 109.47224 * 269.99892 * 3 2 1 5 5 H 1.48496 * 109.47502 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.47038 * 150.00210 * 3 2 1 7 7 C 1.38811 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00453 * 193.58373 * 7 2 1 9 9 N 1.37089 * 119.99575 * 13.58708 * 7 2 1 10 10 C 1.44811 * 120.03366 * 206.79217 * 9 7 2 11 11 C 1.51438 * 113.00389 * 268.00917 * 10 9 7 12 12 C 1.51202 * 114.16157 * 295.74354 * 11 10 9 13 13 H 1.09718 * 110.70688 * 178.96449 * 12 11 10 14 14 C 1.54136 * 108.43574 * 300.88733 * 12 11 10 15 15 C 1.53994 * 104.80608 * 92.73969 * 14 12 11 16 16 C 1.52097 * 105.55253 * 11.48567 * 15 14 12 17 17 H 1.09407 * 108.27181 * 123.23148 * 16 15 14 18 18 C 1.49282 * 120.08214 * 26.51782 * 9 7 2 19 19 N 1.47752 * 109.49526 * 5.44532 * 16 15 14 20 20 C 1.34995 * 127.12840 * 158.62901 * 19 16 15 21 21 O 1.21278 * 119.99880 * 180.02562 * 20 19 16 22 22 C 1.50701 * 120.00113 * 0.02562 * 20 19 16 23 23 N 1.46498 * 109.47116 * 180.02562 * 22 20 19 24 24 C 1.33879 * 122.76264 * 89.99944 * 23 22 20 25 25 O 1.21230 * 125.39748 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.20410 * 180.24379 * 24 23 22 27 27 C 1.54222 * 103.55574 * 359.63179 * 26 24 23 28 28 C 1.33872 * 122.76241 * 270.00006 * 23 22 20 29 29 O 1.21229 * 125.39487 * 0.02562 * 28 23 22 30 30 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 31 31 H 1.08873 * 109.21771 * 146.10490 * 10 9 7 32 32 H 1.09335 * 108.44213 * 28.41421 * 10 9 7 33 33 H 1.09315 * 108.48656 * 174.58768 * 11 10 9 34 34 H 1.09161 * 108.74905 * 57.44476 * 11 10 9 35 35 H 1.09308 * 110.65899 * 333.52887 * 14 12 11 36 36 H 1.09339 * 110.59433 * 211.86075 * 14 12 11 37 37 H 1.09058 * 110.64113 * 251.89304 * 15 14 12 38 38 H 1.09281 * 110.26047 * 130.41335 * 15 14 12 39 39 H 1.09115 * 109.54515 * 14.69905 * 18 9 7 40 40 H 1.09133 * 109.51887 * 255.01825 * 18 9 7 41 41 H 1.09004 * 109.47144 * 59.99731 * 22 20 19 42 42 H 1.09001 * 109.47066 * 300.00173 * 22 20 19 43 43 H 1.08999 * 110.60770 * 118.27950 * 26 24 23 44 44 H 1.09000 * 110.60311 * 241.23592 * 26 24 23 45 45 H 1.09005 * 110.80473 * 241.73196 * 27 26 24 46 46 H 1.09005 * 110.54257 * 118.83499 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0676 -1.2153 0.2191 9 7 1.3536 -2.3726 -0.2800 10 6 1.8471 -3.6255 0.2527 11 6 2.8016 -4.3328 -0.6864 12 6 2.1740 -4.7758 -1.9887 13 1 2.9174 -5.2636 -2.6315 14 6 1.0098 -5.7337 -1.6678 15 6 -0.2353 -4.8302 -1.5979 16 6 0.2045 -3.4857 -2.1567 17 1 -0.4506 -3.2320 -2.9954 18 6 0.1255 -2.3574 -1.1286 19 7 1.5872 -3.5921 -2.6664 20 6 2.1873 -2.7869 -3.5686 21 8 3.3361 -2.9946 -3.8971 22 6 1.4297 -1.6300 -4.1674 23 7 2.2939 -0.9164 -5.1109 24 6 2.3620 -1.2300 -6.4107 25 8 1.7372 -2.1162 -6.9529 26 6 3.3474 -0.3074 -7.0943 27 6 3.8350 0.6096 -5.9542 28 6 3.0805 0.1030 -4.7444 29 8 3.1738 0.5492 -3.6211 30 1 -0.4850 0.8401 -0.0004 31 1 1.0041 -4.2796 0.4693 32 1 2.3698 -3.4205 1.1909 33 1 3.2012 -5.2131 -0.1761 34 1 3.6361 -3.6647 -0.9071 35 1 1.1751 -6.2344 -0.7103 36 1 0.8974 -6.4807 -2.4582 37 1 -0.5753 -4.7232 -0.5672 38 1 -1.0399 -5.2467 -2.2090 39 1 0.0488 -1.3979 -1.6425 40 1 -0.7546 -2.4975 -0.4987 41 1 1.1178 -0.9504 -3.3743 42 1 0.5505 -2.0040 -4.6920 43 1 4.1776 -0.8757 -7.5138 44 1 2.8514 0.2774 -7.8690 45 1 3.5798 1.6496 -6.1577 46 1 4.9099 0.5009 -5.8091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039468077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:14 Heat of formation + Delta-G solvation = -80.421864 kcal Electronic energy + Delta-G solvation = -31977.371660 eV Core-core repulsion = 27867.430572 eV Total energy + Delta-G solvation = -4109.941088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.99525 -41.52107 -39.68077 -39.22815 -36.94343 -36.43276 -34.75631 -34.03302 -32.95824 -32.64056 -29.10766 -28.80721 -27.14332 -26.94396 -25.79885 -23.58726 -23.34288 -22.36494 -21.28053 -20.53646 -19.81718 -19.06626 -18.47402 -18.06555 -17.64426 -17.51194 -17.10046 -16.64501 -16.20494 -15.95233 -15.70632 -15.51281 -15.31327 -15.02660 -14.95031 -14.66859 -14.51376 -14.36671 -14.11999 -13.73142 -13.57259 -13.46913 -13.31605 -13.13523 -12.83555 -12.73815 -12.45299 -12.43201 -12.14080 -12.05464 -11.89615 -11.78811 -11.62586 -11.59778 -11.56378 -11.13266 -10.91158 -10.66705 -10.53003 -9.61073 -8.67439 -7.91304 -5.31483 0.48397 1.22620 1.34727 1.43178 1.47886 1.52319 1.69498 2.11296 2.48533 3.16645 3.20650 3.22802 3.34754 3.60443 3.61642 3.71102 3.82007 3.87294 4.05192 4.07988 4.14395 4.15912 4.21570 4.23273 4.42276 4.59693 4.65352 4.68729 4.72556 4.86165 4.86670 4.93026 4.99004 5.04947 5.08344 5.18150 5.21446 5.34115 5.48085 5.54801 5.63819 5.66490 5.76213 6.30250 6.35852 6.52847 6.68769 7.02110 7.15121 7.88765 8.32125 9.14108 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.006899 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.010928 B = 4057.538315 C = 5977.276533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.246 4.246 8 H 0.036 0.964 9 N -0.597 5.597 10 C 0.156 3.844 11 C -0.142 4.142 12 C 0.138 3.862 13 H 0.074 0.926 14 C -0.110 4.110 15 C -0.112 4.112 16 C 0.101 3.899 17 H 0.079 0.921 18 C 0.173 3.827 19 N -0.586 5.586 20 C 0.530 3.470 21 O -0.588 6.588 22 C 0.087 3.913 23 N -0.567 5.567 24 C 0.522 3.478 25 O -0.522 6.522 26 C -0.132 4.132 27 C -0.137 4.137 28 C 0.504 3.496 29 O -0.520 6.520 30 H 0.249 0.751 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.010 0.990 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.153 0.847 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -6.392 -13.299 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.765 3.235 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.053 0.947 9 N -0.319 5.319 10 C 0.029 3.971 11 C -0.183 4.183 12 C 0.035 3.965 13 H 0.092 0.908 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.004 4.004 17 H 0.097 0.903 18 C 0.047 3.953 19 N -0.318 5.318 20 C 0.318 3.682 21 O -0.470 6.470 22 C -0.038 4.038 23 N -0.309 5.309 24 C 0.315 3.685 25 O -0.396 6.396 26 C -0.170 4.170 27 C -0.176 4.176 28 C 0.296 3.704 29 O -0.393 6.393 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.120 0.880 42 H 0.150 0.850 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.171 0.829 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.059 -6.530 -13.175 14.743 hybrid contribution 0.550 1.299 0.774 1.609 sum 1.609 -5.231 -12.401 13.555 Atomic orbital electron populations 1.70065 1.05353 1.25278 1.56140 1.25250 0.95905 0.99624 1.01352 0.85767 0.78004 0.81981 0.77752 1.21026 1.21462 1.21269 1.19067 0.90654 0.86270 1.41655 0.94661 1.44056 1.29478 1.01902 1.56487 1.20143 0.96070 0.87366 0.93531 1.21960 0.98994 1.00199 0.97120 1.21762 0.96905 0.85599 0.92225 0.90815 1.22466 0.91845 0.96336 1.04187 1.22057 0.98447 0.91678 1.02786 1.22367 0.81759 0.98713 0.97538 0.90259 1.21493 0.87822 0.95463 0.90484 1.48748 1.15037 1.28437 1.39542 1.20320 0.86459 0.82820 0.78624 1.90583 1.18768 1.73456 1.64162 1.21401 0.94047 0.93906 0.94455 1.46676 1.40595 1.32131 1.11479 1.21845 0.82195 0.83719 0.80770 1.90717 1.47226 1.32347 1.69334 1.22586 0.99014 0.96678 0.98760 1.22598 1.02950 1.03617 0.88416 1.22169 0.78531 0.78033 0.91716 1.90910 1.63398 1.59900 1.25080 0.94150 0.91861 0.95454 0.88959 0.97074 0.87857 0.89157 0.89906 0.87979 0.93265 0.95320 0.87953 0.84983 0.83666 0.82177 0.82895 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 10.99 21.65 0.24 -53.34 16 2 C -0.03 -1.46 5.00 84.86 0.42 -1.04 16 3 Si 0.93 49.36 29.58 68.60 2.03 51.39 16 4 H -0.28 -15.52 7.11 99.48 0.71 -14.82 16 5 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.25 -14.26 9.58 84.01 0.81 -13.45 16 8 H 0.04 2.19 7.87 -2.91 -0.02 2.16 16 9 N -0.60 -29.45 2.59 -701.42 -1.81 -31.27 16 10 C 0.16 6.33 5.25 86.18 0.45 6.78 16 11 C -0.14 -5.17 5.03 29.50 0.15 -5.02 16 12 C 0.14 4.54 3.55 44.41 0.16 4.70 16 13 H 0.07 2.51 8.09 -2.00 -0.02 2.49 16 14 C -0.11 -2.51 5.99 31.31 0.19 -2.32 16 15 C -0.11 -2.75 5.73 30.63 0.18 -2.57 16 16 C 0.10 3.41 2.57 44.41 0.11 3.53 16 17 H 0.08 2.41 7.69 -2.17 -0.02 2.39 16 18 C 0.17 7.69 4.55 85.79 0.39 8.08 16 19 N -0.59 -22.40 2.30 -767.55 -1.77 -24.17 16 20 C 0.53 22.80 7.95 87.62 0.70 23.50 16 21 O -0.59 -28.44 16.77 -3.02 -0.05 -28.49 16 22 C 0.09 3.39 5.14 85.63 0.44 3.83 16 23 N -0.57 -19.42 2.04 -760.72 -1.55 -20.98 16 24 C 0.52 14.67 8.08 87.99 0.71 15.38 16 25 O -0.52 -17.55 17.48 -2.88 -0.05 -17.60 16 26 C -0.13 -1.87 7.03 30.46 0.21 -1.66 16 27 C -0.14 -2.36 7.03 30.46 0.21 -2.15 16 28 C 0.50 17.27 8.08 87.99 0.71 17.98 16 29 O -0.52 -24.27 17.48 -2.87 -0.05 -24.32 16 30 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 31 H 0.06 2.20 5.57 -2.45 -0.01 2.19 16 32 H 0.03 1.18 8.00 -2.21 -0.02 1.16 16 33 H 0.09 2.66 8.14 -2.22 -0.02 2.64 16 34 H 0.01 0.48 8.16 -2.30 -0.02 0.46 16 35 H 0.10 1.95 7.66 -2.22 -0.02 1.93 16 36 H 0.09 1.67 8.17 -2.21 -0.02 1.66 16 37 H 0.08 2.09 6.50 -2.36 -0.02 2.08 16 38 H 0.10 1.90 8.17 -2.24 -0.02 1.88 16 39 H 0.05 2.53 5.15 -2.33 -0.01 2.51 16 40 H 0.03 1.33 7.87 -2.32 -0.02 1.31 16 41 H 0.10 4.61 6.61 -2.38 -0.02 4.59 16 42 H 0.13 4.38 7.62 -2.39 -0.02 4.37 16 43 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -87.03 363.23 3.84 -83.19 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.02 Total: 10.03 kcal Atomic # 6 Polarization: 49.71 SS G_CDS: 5.84 Total: 55.55 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -4.90 Total: -129.75 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -0.15 Total: -70.41 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -87.03 3.84 -83.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039468077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.766 kcal (2) G-P(sol) polarization free energy of solvation -87.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds