Wall clock time and date at job start Tue Mar 31 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47116 * 239.99681 * 3 2 1 5 5 H 1.48506 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47241 * 119.99906 * 3 2 1 7 7 C 1.38807 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99796 * 194.71182 * 7 2 1 9 9 N 1.37136 * 120.00192 * 14.71130 * 7 2 1 10 10 C 1.44781 * 119.94232 * 205.19872 * 9 7 2 11 11 C 1.51404 * 112.99790 * 267.45518 * 10 9 7 12 12 C 1.51488 * 114.06046 * 294.37040 * 11 10 9 13 13 H 1.09547 * 110.74649 * 179.75783 * 12 11 10 14 14 C 1.53997 * 108.51397 * 302.13937 * 12 11 10 15 15 C 1.53984 * 104.82105 * 92.11970 * 14 12 11 16 16 C 1.52035 * 105.56669 * 11.65926 * 15 14 12 17 17 H 1.09444 * 108.22674 * 122.78322 * 16 15 14 18 18 C 1.49270 * 120.01333 * 24.92057 * 9 7 2 19 19 N 1.47954 * 109.62640 * 5.17893 * 16 15 14 20 20 C 1.34848 * 127.27208 * 158.97782 * 19 16 15 21 21 O 1.21285 * 120.00402 * 180.58908 * 20 19 16 22 22 C 1.50703 * 120.00073 * 0.58826 * 20 19 16 23 23 C 1.52996 * 109.47183 * 179.97438 * 22 20 19 24 24 H 1.08993 * 110.54464 * 303.60404 * 23 22 20 25 25 C 1.54228 * 110.60299 * 180.58873 * 23 22 20 26 26 C 1.51323 * 103.55529 * 241.48365 * 25 23 22 27 27 O 1.21229 * 125.39416 * 179.97438 * 26 25 23 28 28 N 1.33875 * 109.20639 * 0.02562 * 26 25 23 29 29 C 1.33877 * 114.47343 * 359.97438 * 28 26 25 30 30 O 1.21230 * 125.39494 * 179.97438 * 29 28 26 31 31 H 0.97005 * 119.99995 * 0.02562 * 1 2 3 32 32 H 1.08824 * 109.40195 * 145.32367 * 10 9 7 33 33 H 1.09389 * 108.34014 * 27.70345 * 10 9 7 34 34 H 1.09221 * 108.59012 * 173.30060 * 11 10 9 35 35 H 1.09121 * 108.78171 * 55.81904 * 11 10 9 36 36 H 1.09366 * 110.59722 * 211.24576 * 14 12 11 37 37 H 1.09321 * 110.76196 * 332.89229 * 14 12 11 38 38 H 1.09083 * 110.65708 * 252.08839 * 15 14 12 39 39 H 1.09288 * 110.28025 * 130.65466 * 15 14 12 40 40 H 1.09164 * 109.52190 * 16.40326 * 18 9 7 41 41 H 1.09155 * 109.46587 * 256.92692 * 18 9 7 42 42 H 1.09003 * 109.46788 * 300.00588 * 22 20 19 43 43 H 1.08999 * 109.47045 * 59.99497 * 22 20 19 44 44 H 1.09003 * 110.60875 * 359.97438 * 25 23 22 45 45 H 1.09004 * 110.60727 * 122.96914 * 25 23 22 46 46 H 0.96996 * 122.76025 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0637 -1.2173 0.2381 9 7 1.3583 -2.3704 -0.3005 10 6 1.8643 -3.6305 0.2019 11 6 2.8067 -4.3169 -0.7641 12 6 2.1498 -4.7679 -2.0525 13 1 2.8791 -5.2521 -2.7111 14 6 0.9929 -5.7226 -1.7034 15 6 -0.2473 -4.8161 -1.5968 16 6 0.1791 -3.4727 -2.1669 17 1 -0.4952 -3.2212 -2.9915 18 6 0.1246 -2.3420 -1.1404 19 7 1.5504 -3.5770 -2.7124 20 6 2.1305 -2.7695 -3.6234 21 8 3.2673 -2.9843 -3.9877 22 6 1.3664 -1.6001 -4.1889 23 6 2.2469 -0.8529 -5.1925 24 1 3.1794 -0.5389 -4.7237 25 6 1.4943 0.3597 -5.7773 26 6 1.4254 0.0540 -7.2577 27 8 0.9079 0.7593 -8.0969 28 7 2.0256 -1.1192 -7.4936 29 6 2.5237 -1.7163 -6.4038 30 8 3.1040 -2.7806 -6.3897 31 1 -0.4850 0.8401 -0.0004 32 1 1.0296 -4.2924 0.4242 33 1 2.4029 -3.4379 1.1343 34 1 3.2356 -5.1914 -0.2699 35 1 3.6199 -3.6316 -1.0084 36 1 0.8569 -6.4670 -2.4929 37 1 1.1811 -6.2281 -0.7525 38 1 -0.5571 -4.7085 -0.5565 39 1 -1.0709 -5.2305 -2.1837 40 1 0.0560 -1.3820 -1.6555 41 1 -0.7524 -2.4671 -0.5027 42 1 0.4687 -1.9612 -4.6907 43 1 1.0843 -0.9254 -3.3806 44 1 0.4925 0.4302 -5.3535 45 1 2.0525 1.2791 -5.6010 46 1 2.0945 -1.5044 -8.3811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039477962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:08 Heat of formation + Delta-G solvation = -66.880712 kcal Electronic energy + Delta-G solvation = -31489.809054 eV Core-core repulsion = 27380.455155 eV Total energy + Delta-G solvation = -4109.353899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83480 -40.06478 -38.63055 -37.53200 -35.83980 -34.64648 -33.53906 -32.61777 -31.21902 -31.06189 -28.54640 -27.08265 -25.60910 -24.97486 -23.97982 -22.14054 -21.61544 -20.96377 -20.44214 -19.27298 -18.21747 -17.88234 -17.17220 -16.67128 -16.21313 -16.07111 -15.49899 -15.21859 -15.00352 -14.71960 -14.29007 -14.06403 -13.87392 -13.51308 -13.34444 -13.25447 -13.07591 -12.78455 -12.68606 -12.48365 -12.17239 -11.82490 -11.67635 -11.49316 -11.26051 -11.17666 -10.90737 -10.86229 -10.72946 -10.63674 -10.46739 -10.33206 -10.14339 -10.07637 -9.90013 -9.82010 -9.42413 -9.17546 -8.54245 -7.92608 -6.76403 -5.85961 -3.25050 1.49276 2.70675 2.74000 3.26281 3.31895 3.38680 3.41047 3.47405 4.07795 4.22032 4.33673 4.43890 4.71721 4.82311 4.95341 5.13565 5.21991 5.29224 5.34396 5.38049 5.41939 5.55861 5.63142 5.73166 5.74901 5.84696 5.92315 5.93617 5.97466 6.06091 6.10472 6.22421 6.36060 6.45035 6.48856 6.58741 6.60723 6.80225 6.82328 7.00944 7.25597 7.26795 7.42893 7.74342 7.86946 8.21903 8.37067 8.81418 9.13815 9.80012 10.31464 11.23293 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.005680 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.552054 B = 4928.657853 C = 6704.584826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.002 3.998 3 Si 0.895 3.105 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.158 3.842 11 C -0.152 4.152 12 C 0.147 3.853 13 H 0.078 0.922 14 C -0.124 4.124 15 C -0.119 4.119 16 C 0.103 3.897 17 H 0.058 0.942 18 C 0.166 3.834 19 N -0.590 5.590 20 C 0.541 3.459 21 O -0.532 6.532 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.133 0.867 25 C -0.157 4.157 26 C 0.533 3.467 27 O -0.494 6.494 28 N -0.686 5.686 29 C 0.524 3.476 30 O -0.443 6.443 31 H 0.254 0.746 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -5.773 -7.986 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.195 4.195 3 Si 0.725 3.275 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.305 5.305 10 C 0.030 3.970 11 C -0.193 4.193 12 C 0.044 3.956 13 H 0.097 0.903 14 C -0.163 4.163 15 C -0.157 4.157 16 C -0.002 4.002 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.324 5.324 20 C 0.329 3.671 21 O -0.409 6.409 22 C -0.164 4.164 23 C -0.128 4.128 24 H 0.150 0.850 25 C -0.196 4.196 26 C 0.321 3.679 27 O -0.367 6.367 28 N -0.352 5.352 29 C 0.310 3.690 30 O -0.310 6.310 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.107 0.893 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.029 -5.808 -8.491 10.338 hybrid contribution 0.446 0.779 -0.350 0.963 sum -0.583 -5.029 -8.840 10.187 Atomic orbital electron populations 1.69993 1.04939 1.25430 1.55121 1.24900 0.95287 0.97923 1.01406 0.86474 0.78979 0.83675 0.78350 1.20992 1.21599 1.21025 1.19165 0.91968 0.84606 1.41414 0.91933 1.43901 1.28719 1.01300 1.56627 1.19986 0.95001 0.88140 0.93873 1.22109 1.00794 0.99976 0.96470 1.21542 0.94822 0.85599 0.93664 0.90350 1.22434 0.94868 0.97185 1.01764 1.22038 0.97206 0.94249 1.02230 1.22257 0.82840 0.97537 0.97578 0.92366 1.21654 0.88887 0.95121 0.90336 1.48700 1.14905 1.28266 1.40500 1.19613 0.86742 0.82554 0.78180 1.90744 1.17887 1.72224 1.60050 1.21603 0.98002 0.97426 0.99384 1.21822 1.02501 0.93921 0.94559 0.84961 1.22627 1.05271 1.00486 0.91264 1.20834 0.75266 0.79563 0.92225 1.90793 1.42238 1.51129 1.52517 1.44903 1.54166 1.23077 1.13086 1.20811 0.77030 0.85818 0.85298 1.90878 1.35643 1.19414 1.85037 0.93632 0.94913 0.93987 0.92885 0.92195 0.91947 0.90331 0.90031 0.91670 0.89784 0.94528 0.89329 0.85831 0.85595 0.85756 0.75066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.62 10.97 55.49 0.61 -23.01 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 3 Si 0.90 20.33 29.58 -169.99 -5.03 15.30 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.11 9.58 -14.97 -0.14 -6.26 16 8 H 0.06 1.64 7.87 -52.49 -0.41 1.22 16 9 N -0.58 -13.00 2.63 -173.09 -0.46 -13.45 16 10 C 0.16 3.04 5.24 -5.77 -0.03 3.01 16 11 C -0.15 -2.65 5.04 -28.30 -0.14 -2.80 16 12 C 0.15 2.40 3.59 -66.92 -0.24 2.16 16 13 H 0.08 1.34 8.07 -51.62 -0.42 0.93 16 14 C -0.12 -1.62 5.97 -25.70 -0.15 -1.77 16 15 C -0.12 -1.61 5.73 -26.71 -0.15 -1.76 16 16 C 0.10 1.67 2.56 -67.72 -0.17 1.49 16 17 H 0.06 0.85 7.72 -51.68 -0.40 0.45 16 18 C 0.17 3.34 4.46 -2.60 -0.01 3.33 16 19 N -0.59 -10.37 2.32 -156.28 -0.36 -10.73 16 20 C 0.54 10.02 7.55 -10.95 -0.08 9.93 16 21 O -0.53 -11.44 13.91 -17.46 -0.24 -11.68 16 22 C -0.12 -1.82 4.14 -27.88 -0.12 -1.93 16 23 C -0.11 -1.38 2.72 -90.83 -0.25 -1.63 16 24 H 0.13 1.83 8.03 -51.93 -0.42 1.41 16 25 C -0.16 -1.58 6.67 -26.94 -0.18 -1.76 16 26 C 0.53 6.12 8.55 -11.08 -0.09 6.03 16 27 O -0.49 -7.06 18.02 5.60 0.10 -6.96 16 28 N -0.69 -7.61 5.48 -11.39 -0.06 -7.68 16 29 C 0.52 7.32 7.71 -11.09 -0.09 7.23 16 30 O -0.44 -7.97 15.42 -17.41 -0.27 -8.24 16 31 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.03 0.58 5.43 -52.03 -0.28 0.30 16 33 H 0.04 0.85 7.99 -51.71 -0.41 0.43 16 34 H 0.05 0.79 8.16 -51.80 -0.42 0.37 16 35 H 0.06 1.23 8.15 -51.86 -0.42 0.81 16 36 H 0.06 0.73 8.17 -51.72 -0.42 0.31 16 37 H 0.08 0.93 7.66 -51.75 -0.40 0.53 16 38 H 0.08 1.15 6.46 -51.88 -0.34 0.81 16 39 H 0.06 0.75 8.17 -51.77 -0.42 0.32 16 40 H 0.08 1.86 5.08 -51.84 -0.26 1.59 16 41 H 0.04 0.80 7.91 -51.84 -0.41 0.39 16 42 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 43 H 0.12 1.95 6.83 -51.93 -0.35 1.60 16 44 H 0.13 1.12 7.74 -51.93 -0.40 0.72 16 45 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.41 3.83 8.96 -40.82 -0.37 3.46 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -32.26 356.94 -8.80 -41.06 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.53 Total: 4.76 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -1.94 Total: 15.26 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.27 Total: -54.87 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.41 Total: -26.88 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.26 -8.80 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039477962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.820 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds