Wall clock time and date at job start Tue Mar 31 2020 18:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47116 * 239.99681 * 3 2 1 5 5 H 1.48506 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47241 * 119.99906 * 3 2 1 7 7 C 1.38807 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99796 * 194.71182 * 7 2 1 9 9 N 1.37136 * 120.00192 * 14.71130 * 7 2 1 10 10 C 1.44781 * 119.94232 * 205.19872 * 9 7 2 11 11 C 1.51404 * 112.99790 * 267.45518 * 10 9 7 12 12 C 1.51488 * 114.06046 * 294.37040 * 11 10 9 13 13 H 1.09547 * 110.74649 * 179.75783 * 12 11 10 14 14 C 1.53997 * 108.51397 * 302.13937 * 12 11 10 15 15 C 1.53984 * 104.82105 * 92.11970 * 14 12 11 16 16 C 1.52035 * 105.56669 * 11.65926 * 15 14 12 17 17 H 1.09444 * 108.22674 * 122.78322 * 16 15 14 18 18 C 1.49270 * 120.01333 * 24.92057 * 9 7 2 19 19 N 1.47954 * 109.62640 * 5.17893 * 16 15 14 20 20 C 1.34848 * 127.27208 * 158.97782 * 19 16 15 21 21 O 1.21285 * 120.00402 * 180.58908 * 20 19 16 22 22 C 1.50703 * 120.00073 * 0.58826 * 20 19 16 23 23 C 1.52996 * 109.47183 * 179.97438 * 22 20 19 24 24 H 1.08993 * 110.54464 * 303.60404 * 23 22 20 25 25 C 1.54228 * 110.60299 * 180.58873 * 23 22 20 26 26 C 1.51323 * 103.55529 * 241.48365 * 25 23 22 27 27 O 1.21229 * 125.39416 * 179.97438 * 26 25 23 28 28 N 1.33875 * 109.20639 * 0.02562 * 26 25 23 29 29 C 1.33877 * 114.47343 * 359.97438 * 28 26 25 30 30 O 1.21230 * 125.39494 * 179.97438 * 29 28 26 31 31 H 0.97005 * 119.99995 * 0.02562 * 1 2 3 32 32 H 1.08824 * 109.40195 * 145.32367 * 10 9 7 33 33 H 1.09389 * 108.34014 * 27.70345 * 10 9 7 34 34 H 1.09221 * 108.59012 * 173.30060 * 11 10 9 35 35 H 1.09121 * 108.78171 * 55.81904 * 11 10 9 36 36 H 1.09366 * 110.59722 * 211.24576 * 14 12 11 37 37 H 1.09321 * 110.76196 * 332.89229 * 14 12 11 38 38 H 1.09083 * 110.65708 * 252.08839 * 15 14 12 39 39 H 1.09288 * 110.28025 * 130.65466 * 15 14 12 40 40 H 1.09164 * 109.52190 * 16.40326 * 18 9 7 41 41 H 1.09155 * 109.46587 * 256.92692 * 18 9 7 42 42 H 1.09003 * 109.46788 * 300.00588 * 22 20 19 43 43 H 1.08999 * 109.47045 * 59.99497 * 22 20 19 44 44 H 1.09003 * 110.60875 * 359.97438 * 25 23 22 45 45 H 1.09004 * 110.60727 * 122.96914 * 25 23 22 46 46 H 0.96996 * 122.76025 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0637 -1.2173 0.2381 9 7 1.3583 -2.3704 -0.3005 10 6 1.8643 -3.6305 0.2019 11 6 2.8067 -4.3169 -0.7641 12 6 2.1498 -4.7679 -2.0525 13 1 2.8791 -5.2521 -2.7111 14 6 0.9929 -5.7226 -1.7034 15 6 -0.2473 -4.8161 -1.5968 16 6 0.1791 -3.4727 -2.1669 17 1 -0.4952 -3.2212 -2.9915 18 6 0.1246 -2.3420 -1.1404 19 7 1.5504 -3.5770 -2.7124 20 6 2.1305 -2.7695 -3.6234 21 8 3.2673 -2.9843 -3.9877 22 6 1.3664 -1.6001 -4.1889 23 6 2.2469 -0.8529 -5.1925 24 1 3.1794 -0.5389 -4.7237 25 6 1.4943 0.3597 -5.7773 26 6 1.4254 0.0540 -7.2577 27 8 0.9079 0.7593 -8.0969 28 7 2.0256 -1.1192 -7.4936 29 6 2.5237 -1.7163 -6.4038 30 8 3.1040 -2.7806 -6.3897 31 1 -0.4850 0.8401 -0.0004 32 1 1.0296 -4.2924 0.4242 33 1 2.4029 -3.4379 1.1343 34 1 3.2356 -5.1914 -0.2699 35 1 3.6199 -3.6316 -1.0084 36 1 0.8569 -6.4670 -2.4929 37 1 1.1811 -6.2281 -0.7525 38 1 -0.5571 -4.7085 -0.5565 39 1 -1.0709 -5.2305 -2.1837 40 1 0.0560 -1.3820 -1.6555 41 1 -0.7524 -2.4671 -0.5027 42 1 0.4687 -1.9612 -4.6907 43 1 1.0843 -0.9254 -3.3806 44 1 0.4925 0.4302 -5.3535 45 1 2.0525 1.2791 -5.6010 46 1 2.0945 -1.5044 -8.3811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039477962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:07 Heat of formation + Delta-G solvation = -87.600523 kcal Electronic energy + Delta-G solvation = -31490.707533 eV Core-core repulsion = 27380.455155 eV Total energy + Delta-G solvation = -4110.252378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89043 -41.40685 -39.77946 -38.93511 -36.97208 -36.31983 -34.71868 -34.00767 -32.84391 -32.45718 -29.61974 -28.70263 -26.97629 -26.15577 -25.67524 -23.38444 -22.65267 -22.26416 -21.62214 -20.73352 -19.54398 -19.01921 -18.63997 -17.90945 -17.65032 -17.19336 -17.00070 -16.53482 -16.40756 -15.94419 -15.72548 -15.30471 -15.18242 -14.97598 -14.73544 -14.55865 -14.34695 -14.00519 -13.93848 -13.78303 -13.54519 -13.19415 -13.04969 -12.96731 -12.69980 -12.61964 -12.33647 -12.29452 -12.27342 -11.96140 -11.79144 -11.72833 -11.52486 -11.44421 -11.41051 -11.03192 -10.82383 -10.60751 -10.42773 -9.35247 -8.58411 -7.79185 -5.18954 0.44783 1.48303 1.52227 1.57759 1.67990 1.75467 1.86563 2.18808 2.56858 3.09729 3.19664 3.27487 3.35219 3.62372 3.68403 3.75814 3.87974 4.05453 4.08872 4.21937 4.24386 4.34880 4.47359 4.52437 4.63932 4.71221 4.74528 4.78774 4.84112 4.87058 5.02191 5.04025 5.08170 5.13760 5.16058 5.27355 5.32576 5.43001 5.57191 5.58026 5.67592 5.77897 5.80885 6.25387 6.46572 6.84941 6.86129 7.25392 7.41529 7.98963 8.44108 9.26726 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.005680 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.552054 B = 4928.657853 C = 6704.584826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.031 4.031 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.252 4.252 8 H 0.043 0.957 9 N -0.597 5.597 10 C 0.157 3.843 11 C -0.140 4.140 12 C 0.138 3.862 13 H 0.068 0.932 14 C -0.113 4.113 15 C -0.115 4.115 16 C 0.107 3.893 17 H 0.081 0.919 18 C 0.175 3.825 19 N -0.595 5.595 20 C 0.526 3.474 21 O -0.570 6.570 22 C -0.117 4.117 23 C -0.105 4.105 24 H 0.120 0.880 25 C -0.144 4.144 26 C 0.543 3.457 27 O -0.517 6.517 28 N -0.673 5.673 29 C 0.532 3.468 30 O -0.486 6.486 31 H 0.251 0.749 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.019 0.981 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -6.471 -8.647 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.227 4.227 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.061 0.939 9 N -0.320 5.320 10 C 0.030 3.970 11 C -0.181 4.181 12 C 0.035 3.965 13 H 0.086 0.914 14 C -0.151 4.151 15 C -0.153 4.153 16 C 0.002 3.998 17 H 0.099 0.901 18 C 0.050 3.950 19 N -0.328 5.328 20 C 0.316 3.684 21 O -0.450 6.450 22 C -0.157 4.157 23 C -0.127 4.127 24 H 0.138 0.862 25 C -0.184 4.184 26 C 0.333 3.667 27 O -0.391 6.391 28 N -0.339 5.339 29 C 0.319 3.681 30 O -0.356 6.356 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.512 -6.519 -9.158 11.519 hybrid contribution 0.948 0.978 -0.090 1.365 sum -1.564 -5.541 -9.249 10.894 Atomic orbital electron populations 1.70098 1.05545 1.25585 1.55806 1.25326 0.95909 0.99763 1.01697 0.85732 0.77963 0.81084 0.77980 1.20411 1.21362 1.21875 1.19200 0.91396 0.86261 1.41367 0.93928 1.44091 1.29129 1.01383 1.57414 1.20077 0.95776 0.87595 0.93505 1.21964 0.99110 0.99878 0.97130 1.21691 0.96210 0.86099 0.92460 0.91393 1.22407 0.92626 0.96564 1.03486 1.22047 0.98291 0.92532 1.02397 1.22220 0.82645 0.97863 0.97081 0.90105 1.21494 0.87212 0.95904 0.90401 1.48884 1.15529 1.28343 1.40029 1.20331 0.86641 0.83270 0.78161 1.90719 1.19574 1.73287 1.61391 1.21577 0.98761 0.95882 0.99449 1.21781 1.02237 0.94770 0.93952 0.86172 1.22667 1.06193 0.99765 0.89730 1.20933 0.74322 0.78964 0.92484 1.90800 1.43339 1.51702 1.53298 1.44729 1.53307 1.22827 1.13032 1.20859 0.76062 0.85088 0.86044 1.90864 1.37705 1.21361 1.85682 0.93947 0.92583 0.95730 0.90028 0.96392 0.89784 0.88530 0.90412 0.88496 0.91994 0.96260 0.86666 0.86852 0.83677 0.83680 0.74006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.14 10.97 21.65 0.24 -47.90 16 2 C -0.03 -1.58 4.98 84.86 0.42 -1.16 16 3 Si 0.94 42.02 29.58 68.60 2.03 44.05 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.25 -13.01 9.58 84.00 0.80 -12.21 16 8 H 0.04 2.33 7.87 -2.91 -0.02 2.30 16 9 N -0.60 -26.83 2.63 -701.52 -1.85 -28.67 16 10 C 0.16 6.01 5.24 86.18 0.45 6.46 16 11 C -0.14 -4.83 5.04 29.58 0.15 -4.68 16 12 C 0.14 4.36 3.59 44.40 0.16 4.52 16 13 H 0.07 2.29 8.07 -2.10 -0.02 2.28 16 14 C -0.11 -2.53 5.97 31.26 0.19 -2.35 16 15 C -0.11 -2.69 5.73 30.61 0.18 -2.51 16 16 C 0.11 3.23 2.56 44.33 0.11 3.34 16 17 H 0.08 2.11 7.72 -2.15 -0.02 2.09 16 18 C 0.18 6.98 4.46 85.78 0.38 7.36 16 19 N -0.60 -20.40 2.32 -766.69 -1.78 -22.18 16 20 C 0.53 19.51 7.55 87.65 0.66 20.17 16 21 O -0.57 -25.15 13.91 18.96 0.26 -24.88 16 22 C -0.12 -3.32 4.14 29.85 0.12 -3.20 16 23 C -0.11 -2.65 2.72 -10.93 -0.03 -2.68 16 24 H 0.12 3.35 8.03 -2.39 -0.02 3.34 16 25 C -0.14 -2.58 6.67 30.46 0.20 -2.38 16 26 C 0.54 11.38 8.55 88.00 0.75 12.14 16 27 O -0.52 -13.76 18.02 -2.87 -0.05 -13.81 16 28 N -0.67 -14.01 5.48 -427.78 -2.34 -16.36 16 29 C 0.53 14.53 7.71 87.99 0.68 15.21 16 30 O -0.49 -17.67 15.42 19.13 0.29 -17.38 16 31 H 0.25 12.81 8.31 -92.70 -0.77 12.04 16 32 H 0.06 1.88 5.43 -2.48 -0.01 1.87 16 33 H 0.02 1.00 7.99 -2.18 -0.02 0.98 16 34 H 0.08 2.31 8.16 -2.27 -0.02 2.29 16 35 H 0.02 0.74 8.15 -2.32 -0.02 0.72 16 36 H 0.08 1.59 8.17 -2.19 -0.02 1.57 16 37 H 0.10 1.86 7.66 -2.22 -0.02 1.85 16 38 H 0.08 1.92 6.46 -2.34 -0.02 1.91 16 39 H 0.10 1.73 8.17 -2.23 -0.02 1.72 16 40 H 0.06 2.73 5.08 -2.30 -0.01 2.72 16 41 H 0.02 0.83 7.91 -2.30 -0.02 0.82 16 42 H 0.12 2.60 7.94 -2.39 -0.02 2.58 16 43 H 0.11 3.52 6.83 -2.39 -0.02 3.51 16 44 H 0.15 2.13 7.74 -2.39 -0.02 2.11 16 45 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.42 7.30 8.96 -92.71 -0.83 6.47 16 Total: -1.00 -72.00 356.94 2.25 -69.76 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.20 Total: 19.34 kcal Atomic # 6 Polarization: 32.80 SS G_CDS: 5.23 Total: 38.04 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -5.73 Total: -115.11 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: 0.51 Total: -56.07 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.00 2.25 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039477962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.842 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds