Wall clock time and date at job start Tue Mar 31 2020 19:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47135 * 125.60369 * 0.02562 * 9 7 2 11 11 C 1.54585 * 107.32400 * 180.91585 * 10 9 7 12 12 C 1.53716 * 102.78206 * 20.89322 * 11 10 9 13 13 C 1.53232 * 111.52038 * 86.20467 * 12 11 10 14 14 C 1.55258 * 102.46444 * 101.30062 * 13 12 11 15 15 N 1.48252 * 103.44533 * 36.19500 * 14 13 12 16 16 C 1.34780 * 126.99993 * 141.54334 * 15 14 13 17 17 O 1.21276 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00020 * 0.02562 * 16 15 14 19 19 N 1.46494 * 109.47444 * 179.97438 * 18 16 15 20 20 C 1.33874 * 122.76382 * 269.71498 * 19 18 16 21 21 O 1.21222 * 125.39939 * 359.96999 * 20 19 18 22 22 C 1.51323 * 109.20539 * 179.83911 * 20 19 18 23 23 C 1.54224 * 103.55474 * 0.38285 * 22 20 19 24 24 C 1.33885 * 122.75976 * 89.99678 * 19 18 16 25 25 O 1.21220 * 125.39693 * 0.02664 * 24 19 18 26 26 C 1.47880 * 105.99794 * 321.55197 * 15 14 13 27 27 C 1.47699 * 125.60666 * 179.71864 * 9 7 2 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.87293 * 300.34994 * 10 9 7 30 30 H 1.08998 * 109.87060 * 61.34098 * 10 9 7 31 31 H 1.09001 * 110.74417 * 139.21537 * 11 10 9 32 32 H 1.08998 * 110.75035 * 262.56803 * 11 10 9 33 33 H 1.09001 * 110.80811 * 219.54437 * 13 12 11 34 34 H 1.09006 * 110.80916 * 343.05265 * 13 12 11 35 35 H 1.09004 * 110.62233 * 277.71430 * 14 13 12 36 36 H 1.08990 * 110.62760 * 154.68923 * 14 13 12 37 37 H 1.08999 * 109.46792 * 299.99942 * 18 16 15 38 38 H 1.09000 * 109.46950 * 59.99407 * 18 16 15 39 39 H 1.08998 * 110.79493 * 241.77222 * 22 20 19 40 40 H 1.08993 * 110.41576 * 118.80971 * 22 20 19 41 41 H 1.08998 * 110.61066 * 241.26011 * 23 22 20 42 42 H 1.09000 * 110.60836 * 118.29606 * 23 22 20 43 43 H 1.09002 * 110.04433 * 265.87305 * 26 15 14 44 44 H 1.08994 * 110.05036 * 144.40528 * 26 15 14 45 45 H 1.09001 * 110.39332 * 276.21002 * 27 9 7 46 46 H 1.08993 * 110.39685 * 38.59938 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5319 -0.0005 11 6 -0.4526 -4.0453 0.0235 12 6 0.8484 -4.6539 0.5712 13 6 0.8621 -4.6654 2.1034 14 6 0.5060 -6.1408 2.4306 15 7 1.1845 -6.9054 1.3568 16 6 1.8132 -8.0913 1.4787 17 8 2.3291 -8.6065 0.5096 18 6 1.8751 -8.7771 2.8192 19 7 2.6058 -10.0401 2.6885 20 6 2.0023 -11.1998 2.4005 21 8 0.8129 -11.3461 2.2180 22 6 3.0407 -12.2987 2.3356 23 6 4.3615 -11.5668 2.6490 24 6 3.9315 -10.1304 2.8525 25 8 4.6701 -9.2077 3.1218 26 6 1.0311 -6.1019 0.1249 27 6 1.9357 -3.7332 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 -0.5587 -2.0522 0.8835 30 1 -0.5547 -2.0792 -0.9006 31 1 -1.2883 -4.2557 0.6909 32 1 -0.6578 -4.4132 -0.9818 33 1 1.8518 -4.4125 2.4837 34 1 0.1078 -3.9873 2.5025 35 1 -0.5724 -6.2939 2.3882 36 1 0.8968 -6.4224 3.4082 37 1 2.3875 -8.1328 3.5336 38 1 0.8634 -8.9779 3.1717 39 1 3.0741 -12.7412 1.3401 40 1 2.8361 -13.0600 3.0882 41 1 5.0522 -11.6452 1.8094 42 1 4.8140 -11.9641 3.5576 43 1 0.1550 -6.4347 -0.4316 44 1 1.9238 -6.1923 -0.4938 45 1 2.1893 -4.0312 -1.0222 46 1 2.8222 -3.7508 0.6291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041823851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:33 Heat of formation + Delta-G solvation = -55.963731 kcal Electronic energy + Delta-G solvation = -29490.310483 eV Core-core repulsion = 25381.429980 eV Total energy + Delta-G solvation = -4108.880504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27984 -40.19549 -38.88425 -38.43368 -36.15246 -35.72788 -33.85827 -32.70213 -30.50907 -29.37974 -28.93017 -27.94119 -26.57008 -25.44261 -23.75211 -22.79596 -22.75730 -20.58916 -20.22018 -19.28045 -18.80932 -17.89880 -17.45320 -16.89323 -16.81722 -16.61661 -15.87675 -15.45876 -14.96852 -14.71952 -14.54103 -14.46813 -14.27065 -14.01228 -13.92661 -13.83977 -13.33329 -13.19753 -12.86025 -12.68019 -12.42628 -12.22736 -11.96934 -11.81440 -11.53330 -11.30089 -11.15617 -11.04361 -10.89103 -10.80278 -10.70766 -10.40077 -10.19807 -10.01500 -9.92555 -9.83245 -9.70510 -9.62004 -8.73227 -8.60166 -6.82973 -5.71650 -3.04656 1.18670 1.93480 2.35590 2.44472 2.95662 3.39560 3.45680 3.47763 3.66444 3.79938 4.00139 4.21509 4.42542 4.49349 4.63834 4.71915 4.81875 4.87945 4.95574 4.99473 5.00462 5.15074 5.18182 5.26114 5.39276 5.44827 5.54712 5.75321 5.81188 5.92093 5.99518 6.01178 6.20973 6.31556 6.39339 6.41051 6.50613 6.54874 6.73062 6.82205 6.95305 7.36122 7.45663 7.55984 7.60960 7.82289 7.97470 8.25106 9.22134 9.81935 10.47938 11.40095 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.002440 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.411304 B =11471.236112 C =12040.463684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.132 4.132 12 C -0.086 4.086 13 C -0.107 4.107 14 C 0.094 3.906 15 N -0.615 5.615 16 C 0.521 3.479 17 O -0.538 6.538 18 C 0.083 3.917 19 N -0.559 5.559 20 C 0.531 3.469 21 O -0.480 6.480 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.530 3.470 25 O -0.476 6.476 26 C 0.124 3.876 27 C 0.150 3.850 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.020 0.980 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -24.754 8.954 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.145 4.145 14 C -0.029 4.029 15 N -0.349 5.349 16 C 0.308 3.692 17 O -0.415 6.415 18 C -0.042 4.042 19 N -0.302 5.302 20 C 0.320 3.680 21 O -0.352 6.352 22 C -0.193 4.193 23 C -0.193 4.193 24 C 0.319 3.681 25 O -0.347 6.347 26 C 0.002 3.998 27 C 0.024 3.976 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.038 0.962 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.821 -24.448 8.493 26.034 hybrid contribution 0.294 1.139 -0.084 1.179 sum 3.114 -23.308 8.409 24.974 Atomic orbital electron populations 1.69967 1.04842 1.24859 1.57386 1.24784 0.95720 0.97614 1.02387 0.86055 0.78751 0.83830 0.77212 1.20536 1.21797 1.21788 1.19104 0.90458 0.82393 1.43389 0.90471 1.44557 1.01614 0.99715 1.87195 1.21197 0.84284 0.87945 1.01101 1.22830 0.94898 0.99670 0.99613 1.21661 0.98918 0.92694 0.95510 1.22475 1.03225 0.93888 0.94920 1.22826 0.97406 0.92281 0.90355 1.48908 1.54093 1.19438 1.12441 1.20197 0.78211 0.80294 0.90548 1.90710 1.46488 1.64413 1.39915 1.21542 1.00269 0.85315 0.97054 1.46344 1.10549 1.09830 1.63523 1.20842 0.89207 0.84231 0.73670 1.90786 1.15182 1.83979 1.45208 1.22452 0.92196 0.97676 1.06995 1.22454 0.98985 0.91285 1.06613 1.20853 0.80881 0.92137 0.74232 1.90807 1.56085 1.44240 1.43565 1.21982 1.02117 0.89268 0.86434 1.21443 0.93490 0.85833 0.96832 0.93852 0.93534 0.93958 0.91880 0.92230 0.90554 0.89293 0.90424 0.90472 0.85816 0.85900 0.85891 0.86062 0.85896 0.86010 0.91255 0.90379 0.96217 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.30 55.49 0.57 -26.25 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.13 3.41 -170.37 -0.58 -15.71 16 10 C 0.18 4.20 5.33 -2.86 -0.02 4.18 16 11 C -0.13 -2.31 5.65 -25.53 -0.14 -2.45 16 12 C -0.09 -1.42 0.75 -153.86 -0.12 -1.54 16 13 C -0.11 -1.54 6.12 -25.42 -0.16 -1.69 16 14 C 0.09 1.04 6.96 -1.88 -0.01 1.03 16 15 N -0.61 -8.48 3.31 -169.98 -0.56 -9.04 16 16 C 0.52 7.56 7.96 -10.98 -0.09 7.47 16 17 O -0.54 -9.72 16.78 5.56 0.09 -9.62 16 18 C 0.08 0.88 4.97 -5.20 -0.03 0.86 16 19 N -0.56 -5.77 2.04 -116.63 -0.24 -6.01 16 20 C 0.53 5.08 8.08 -11.08 -0.09 4.99 16 21 O -0.48 -6.19 17.47 5.61 0.10 -6.10 16 22 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 23 C -0.15 -0.70 7.03 -26.94 -0.19 -0.89 16 24 C 0.53 5.24 8.08 -11.08 -0.09 5.15 16 25 O -0.48 -6.47 17.48 5.61 0.10 -6.38 16 26 C 0.12 1.90 6.31 -3.48 -0.02 1.87 16 27 C 0.15 3.09 6.10 -3.03 -0.02 3.07 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 30 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 31 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 33 H 0.08 1.16 7.66 -51.93 -0.40 0.77 16 34 H 0.09 1.32 7.80 -51.93 -0.40 0.91 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.65 7.25 -51.93 -0.38 0.27 16 37 H 0.12 1.13 7.59 -51.93 -0.39 0.74 16 38 H 0.12 1.07 7.82 -51.93 -0.41 0.66 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 1.01 7.63 -51.93 -0.40 0.62 16 44 H 0.08 1.30 7.54 -51.93 -0.39 0.91 16 45 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 46 H 0.04 0.82 7.72 -51.93 -0.40 0.42 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -37.03 374.26 -8.14 -45.17 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.83 Total: -3.24 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -1.40 Total: 14.44 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.81 Total: -57.01 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.29 Total: -22.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.03 -8.14 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041823851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.793 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds