Wall clock time and date at job start Tue Mar 31 2020 19:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47135 * 125.60369 * 0.02562 * 9 7 2 11 11 C 1.54585 * 107.32400 * 180.91585 * 10 9 7 12 12 C 1.53716 * 102.78206 * 20.89322 * 11 10 9 13 13 C 1.53232 * 111.52038 * 86.20467 * 12 11 10 14 14 C 1.55258 * 102.46444 * 101.30062 * 13 12 11 15 15 N 1.48252 * 103.44533 * 36.19500 * 14 13 12 16 16 C 1.34780 * 126.99993 * 141.54334 * 15 14 13 17 17 O 1.21276 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00020 * 0.02562 * 16 15 14 19 19 N 1.46494 * 109.47444 * 179.97438 * 18 16 15 20 20 C 1.33874 * 122.76382 * 269.71498 * 19 18 16 21 21 O 1.21222 * 125.39939 * 359.96999 * 20 19 18 22 22 C 1.51323 * 109.20539 * 179.83911 * 20 19 18 23 23 C 1.54224 * 103.55474 * 0.38285 * 22 20 19 24 24 C 1.33885 * 122.75976 * 89.99678 * 19 18 16 25 25 O 1.21220 * 125.39693 * 0.02664 * 24 19 18 26 26 C 1.47880 * 105.99794 * 321.55197 * 15 14 13 27 27 C 1.47699 * 125.60666 * 179.71864 * 9 7 2 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.87293 * 300.34994 * 10 9 7 30 30 H 1.08998 * 109.87060 * 61.34098 * 10 9 7 31 31 H 1.09001 * 110.74417 * 139.21537 * 11 10 9 32 32 H 1.08998 * 110.75035 * 262.56803 * 11 10 9 33 33 H 1.09001 * 110.80811 * 219.54437 * 13 12 11 34 34 H 1.09006 * 110.80916 * 343.05265 * 13 12 11 35 35 H 1.09004 * 110.62233 * 277.71430 * 14 13 12 36 36 H 1.08990 * 110.62760 * 154.68923 * 14 13 12 37 37 H 1.08999 * 109.46792 * 299.99942 * 18 16 15 38 38 H 1.09000 * 109.46950 * 59.99407 * 18 16 15 39 39 H 1.08998 * 110.79493 * 241.77222 * 22 20 19 40 40 H 1.08993 * 110.41576 * 118.80971 * 22 20 19 41 41 H 1.08998 * 110.61066 * 241.26011 * 23 22 20 42 42 H 1.09000 * 110.60836 * 118.29606 * 23 22 20 43 43 H 1.09002 * 110.04433 * 265.87305 * 26 15 14 44 44 H 1.08994 * 110.05036 * 144.40528 * 26 15 14 45 45 H 1.09001 * 110.39332 * 276.21002 * 27 9 7 46 46 H 1.08993 * 110.39685 * 38.59938 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5319 -0.0005 11 6 -0.4526 -4.0453 0.0235 12 6 0.8484 -4.6539 0.5712 13 6 0.8621 -4.6654 2.1034 14 6 0.5060 -6.1408 2.4306 15 7 1.1845 -6.9054 1.3568 16 6 1.8132 -8.0913 1.4787 17 8 2.3291 -8.6065 0.5096 18 6 1.8751 -8.7771 2.8192 19 7 2.6058 -10.0401 2.6885 20 6 2.0023 -11.1998 2.4005 21 8 0.8129 -11.3461 2.2180 22 6 3.0407 -12.2987 2.3356 23 6 4.3615 -11.5668 2.6490 24 6 3.9315 -10.1304 2.8525 25 8 4.6701 -9.2077 3.1218 26 6 1.0311 -6.1019 0.1249 27 6 1.9357 -3.7332 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 -0.5587 -2.0522 0.8835 30 1 -0.5547 -2.0792 -0.9006 31 1 -1.2883 -4.2557 0.6909 32 1 -0.6578 -4.4132 -0.9818 33 1 1.8518 -4.4125 2.4837 34 1 0.1078 -3.9873 2.5025 35 1 -0.5724 -6.2939 2.3882 36 1 0.8968 -6.4224 3.4082 37 1 2.3875 -8.1328 3.5336 38 1 0.8634 -8.9779 3.1717 39 1 3.0741 -12.7412 1.3401 40 1 2.8361 -13.0600 3.0882 41 1 5.0522 -11.6452 1.8094 42 1 4.8140 -11.9641 3.5576 43 1 0.1550 -6.4347 -0.4316 44 1 1.9238 -6.1923 -0.4938 45 1 2.1893 -4.0312 -1.0222 46 1 2.8222 -3.7508 0.6291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041823851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:32 Heat of formation + Delta-G solvation = -81.830136 kcal Electronic energy + Delta-G solvation = -29491.432135 eV Core-core repulsion = 25381.429980 eV Total energy + Delta-G solvation = -4110.002155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.99357 -41.42261 -39.76094 -39.68395 -37.28444 -36.91461 -34.66750 -34.31150 -32.12439 -30.65181 -30.38853 -29.10407 -27.16386 -27.12117 -25.24956 -24.07384 -23.34588 -22.14181 -21.42471 -20.35806 -20.01790 -18.91633 -18.71756 -18.19895 -17.61614 -17.53409 -17.03144 -16.71416 -16.41319 -15.90155 -15.68945 -15.64515 -15.33293 -15.29443 -14.93187 -14.65313 -14.40410 -14.36493 -14.12058 -13.84310 -13.54168 -13.45005 -13.36333 -13.07844 -12.98718 -12.66134 -12.58250 -12.54126 -12.10615 -11.99980 -11.88499 -11.80009 -11.68642 -11.55535 -11.40175 -11.31584 -11.13614 -10.73683 -10.71444 -9.86843 -8.90161 -7.86309 -5.21235 0.48965 1.19112 1.35737 1.44429 1.45043 1.55372 1.67544 1.98906 2.47733 3.19929 3.21700 3.25816 3.32437 3.50464 3.56907 3.63491 3.64335 3.86713 3.94210 4.04041 4.18476 4.20004 4.20345 4.25555 4.36009 4.56479 4.60276 4.68944 4.72946 4.76544 4.82219 4.86089 4.91090 4.92696 4.95202 5.04796 5.13403 5.28874 5.35786 5.44054 5.68560 5.73031 5.78871 6.19033 6.27421 6.34832 6.66983 6.87660 7.10244 7.75911 8.40464 9.23830 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.002440 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.411304 B =11471.236112 C =12040.463684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.623 5.623 10 C 0.188 3.812 11 C -0.115 4.115 12 C -0.073 4.073 13 C -0.107 4.107 14 C 0.102 3.898 15 N -0.616 5.616 16 C 0.514 3.486 17 O -0.582 6.582 18 C 0.083 3.917 19 N -0.568 5.568 20 C 0.523 3.477 21 O -0.521 6.521 22 C -0.139 4.139 23 C -0.140 4.140 24 C 0.520 3.480 25 O -0.524 6.524 26 C 0.130 3.870 27 C 0.146 3.854 28 H 0.247 0.753 29 H 0.018 0.982 30 H 0.003 0.997 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.014 0.986 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 -27.456 10.525 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.075 4.075 13 C -0.145 4.145 14 C -0.019 4.019 15 N -0.349 5.349 16 C 0.302 3.698 17 O -0.462 6.462 18 C -0.042 4.042 19 N -0.310 5.310 20 C 0.315 3.685 21 O -0.395 6.395 22 C -0.178 4.178 23 C -0.179 4.179 24 C 0.312 3.688 25 O -0.398 6.398 26 C 0.007 3.993 27 C 0.021 3.979 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.032 0.968 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.179 -27.186 10.083 29.169 hybrid contribution 0.216 2.005 -0.618 2.110 sum 3.396 -25.181 9.465 27.114 Atomic orbital electron populations 1.70174 1.06092 1.25183 1.58298 1.25586 0.96638 1.00759 1.02640 0.85047 0.78053 0.79644 0.76808 1.19406 1.21982 1.21580 1.19430 0.90802 0.83855 1.42934 0.90610 1.44830 1.02578 1.00614 1.86951 1.20968 0.83287 0.91642 0.97823 1.22691 0.96328 0.95064 1.01191 1.21496 0.96384 0.92561 0.97063 1.22437 1.02675 0.96498 0.92915 1.22978 0.98772 0.89125 0.91005 1.48983 1.54017 1.19366 1.12505 1.20941 0.77139 0.80164 0.91532 1.90679 1.48257 1.65602 1.41690 1.21627 1.01949 0.85939 0.94723 1.46649 1.11071 1.09968 1.63345 1.21782 0.89530 0.85034 0.72165 1.90762 1.17103 1.84576 1.47036 1.22597 0.89755 0.96441 1.09020 1.22601 0.99336 0.87242 1.08732 1.21840 0.80338 0.93906 0.72669 1.90780 1.56931 1.46223 1.45826 1.21762 1.01768 0.88561 0.87191 1.21579 0.94693 0.84951 0.96704 0.94349 0.96331 0.97908 0.88795 0.91282 0.91757 0.89469 0.87939 0.87096 0.84416 0.83777 0.84379 0.82550 0.84539 0.82594 0.90017 0.92319 0.96798 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.92 10.30 21.65 0.22 -56.70 16 2 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 3 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -32.19 3.41 -692.91 -2.36 -34.55 16 10 C 0.19 9.06 5.33 86.80 0.46 9.52 16 11 C -0.11 -3.93 5.65 31.38 0.18 -3.75 16 12 C -0.07 -2.39 0.75 -51.76 -0.04 -2.42 16 13 C -0.11 -2.93 6.12 31.45 0.19 -2.74 16 14 C 0.10 1.97 6.96 86.82 0.60 2.57 16 15 N -0.62 -15.96 3.31 -810.08 -2.68 -18.65 16 16 C 0.51 14.38 7.96 87.66 0.70 15.08 16 17 O -0.58 -21.03 16.78 -3.02 -0.05 -21.08 16 18 C 0.08 1.61 4.97 85.63 0.43 2.04 16 19 N -0.57 -10.80 2.04 -760.73 -1.55 -12.35 16 20 C 0.52 8.93 8.08 88.00 0.71 9.64 16 21 O -0.52 -12.72 17.47 -2.85 -0.05 -12.77 16 22 C -0.14 -0.71 7.03 30.46 0.21 -0.49 16 23 C -0.14 -0.79 7.03 30.46 0.21 -0.57 16 24 C 0.52 9.45 8.08 87.99 0.71 10.16 16 25 O -0.52 -13.95 17.48 -2.84 -0.05 -14.00 16 26 C 0.13 3.86 6.31 85.99 0.54 4.40 16 27 C 0.15 6.15 6.10 86.38 0.53 6.68 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 29 H 0.02 0.98 7.38 -2.39 -0.02 0.97 16 30 H 0.00 0.15 7.49 -2.39 -0.02 0.13 16 31 H 0.09 2.68 7.94 -2.39 -0.02 2.66 16 32 H 0.07 2.25 7.91 -2.39 -0.02 2.23 16 33 H 0.06 1.92 7.66 -2.39 -0.02 1.90 16 34 H 0.09 2.45 7.80 -2.38 -0.02 2.44 16 35 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.11 1.44 7.25 -2.39 -0.02 1.42 16 37 H 0.14 2.26 7.59 -2.39 -0.02 2.24 16 38 H 0.14 2.14 7.82 -2.39 -0.02 2.12 16 39 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.08 2.25 7.63 -2.39 -0.02 2.23 16 44 H 0.06 1.98 7.54 -2.39 -0.02 1.96 16 45 H 0.01 0.61 7.90 -2.39 -0.02 0.59 16 46 H 0.03 1.48 7.72 -2.39 -0.02 1.46 16 Total: -1.00 -86.27 374.26 3.27 -83.00 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.99 Total: 4.65 kcal Atomic # 6 Polarization: 27.31 SS G_CDS: 6.77 Total: 34.08 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.37 Total: -122.25 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.15 Total: -47.85 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -86.27 3.27 -83.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041823851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.171 kcal (2) G-P(sol) polarization free energy of solvation -86.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds