Wall clock time and date at job start Tue Mar 31 2020 18:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47044 * 274.98770 * 3 2 1 5 5 H 1.48504 * 109.46927 * 34.98328 * 3 2 1 6 6 H 1.48497 * 109.47132 * 154.98367 * 3 2 1 7 7 C 1.38810 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00211 * 174.09428 * 7 2 1 9 9 N 1.36936 * 120.00392 * 354.09132 * 7 2 1 10 10 C 1.48383 * 126.55746 * 7.66741 * 9 7 2 11 11 C 1.55473 * 106.97615 * 174.50170 * 10 9 7 12 12 C 1.53440 * 101.66964 * 337.39859 * 11 10 9 13 13 H 1.08993 * 111.15116 * 281.18493 * 12 11 10 14 14 C 1.45015 * 126.56578 * 187.69276 * 9 7 2 15 15 H 1.09002 * 108.70603 * 95.87433 * 14 9 7 16 16 C 1.51087 * 119.19223 * 331.19793 * 14 9 7 17 17 C 1.53871 * 107.33798 * 176.10159 * 16 14 9 18 18 C 1.52245 * 111.58907 * 56.76555 * 17 16 14 19 19 N 1.45728 * 116.36503 * 152.71460 * 12 11 10 20 20 C 1.34773 * 122.23167 * 9.90608 * 19 12 11 21 21 O 1.21286 * 119.99996 * 3.84566 * 20 19 12 22 22 C 1.50696 * 120.00205 * 183.84104 * 20 19 12 23 23 C 1.53244 * 109.62622 * 184.27510 * 22 20 19 24 24 C 1.50578 * 109.16432 * 184.48082 * 23 22 20 25 25 O 1.21232 * 119.36052 * 209.07133 * 24 23 22 26 26 N 1.34141 * 121.28079 * 29.35227 * 24 23 22 27 27 C 1.34140 * 122.58552 * 358.91727 * 26 24 23 28 28 O 1.21230 * 119.36279 * 180.80101 * 27 26 24 29 29 C 1.50589 * 121.27725 * 1.08626 * 27 26 24 30 30 H 0.96994 * 120.00016 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.96211 * 55.12036 * 10 9 7 32 32 H 1.08999 * 109.99048 * 293.89868 * 10 9 7 33 33 H 1.09008 * 110.98607 * 219.30793 * 11 10 9 34 34 H 1.08996 * 110.98636 * 95.49842 * 11 10 9 35 35 H 1.09008 * 109.87824 * 295.55237 * 16 14 9 36 36 H 1.08996 * 109.88605 * 56.56316 * 16 14 9 37 37 H 1.09005 * 109.06586 * 177.45276 * 17 16 14 38 38 H 1.08998 * 109.06666 * 296.46094 * 17 16 14 39 39 H 1.09001 * 109.07425 * 191.22893 * 18 17 16 40 40 H 1.08996 * 108.98332 * 72.20394 * 18 17 16 41 41 H 1.08997 * 109.62604 * 304.64908 * 22 20 19 42 42 H 1.08996 * 109.52053 * 64.56876 * 23 22 20 43 43 H 1.09001 * 109.56929 * 304.41894 * 23 22 20 44 44 H 0.97001 * 118.70672 * 179.17891 * 26 24 23 45 45 H 1.09007 * 109.52225 * 210.74189 * 29 27 26 46 46 H 1.08997 * 109.52650 * 90.55021 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0860 -1.2047 -0.0957 9 7 1.3311 -2.3849 0.1231 10 6 -0.1417 -2.5643 0.1046 11 6 -0.4130 -4.0949 0.1362 12 6 0.9076 -4.6554 -0.4081 13 1 0.9532 -4.5705 -1.4937 14 6 1.9135 -3.7016 0.2964 15 1 1.9292 -3.9397 1.3600 16 6 3.2848 -3.9815 -0.2727 17 6 3.6737 -5.4092 0.1493 18 6 2.6422 -6.4300 -0.3110 19 7 1.2696 -5.9979 0.0283 20 6 0.4122 -6.7907 0.7011 21 8 -0.7254 -6.4209 0.9018 22 6 0.8667 -8.1366 1.2040 23 6 -0.3171 -8.8768 1.8355 24 6 0.1701 -10.1708 2.4318 25 8 -0.5852 -11.1168 2.4972 26 7 1.4221 -10.2954 2.8971 27 6 2.3157 -9.2964 2.8430 28 8 3.4365 -9.4778 3.2679 29 6 1.9518 -7.9520 2.2704 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5580 -2.1314 -0.8050 32 1 -0.5860 -2.0896 0.9795 33 1 -1.2465 -4.3572 -0.5155 34 1 -0.5927 -4.4386 1.1549 35 1 3.2562 -3.9112 -1.3601 36 1 4.0047 -3.2668 0.1260 37 1 4.6419 -5.6577 -0.2855 38 1 3.7502 -5.4510 1.2358 39 1 2.8463 -7.3854 0.1724 40 1 2.7221 -6.5524 -1.3912 41 1 1.2643 -8.7220 0.3749 42 1 -1.0651 -9.0868 1.0710 43 1 -0.7590 -8.2590 2.6173 44 1 1.6929 -11.1423 3.2847 45 1 2.8335 -7.4980 1.8181 46 1 1.5758 -7.3074 3.0648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049781376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:15 Heat of formation + Delta-G solvation = -66.923598 kcal Electronic energy + Delta-G solvation = -30563.013210 eV Core-core repulsion = 26453.657451 eV Total energy + Delta-G solvation = -4109.355759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00978 -40.47874 -39.20665 -38.13395 -35.93253 -35.50877 -34.12723 -32.78186 -32.15069 -29.37850 -29.04348 -28.30633 -26.02677 -24.56413 -23.84349 -23.59087 -21.63195 -20.97945 -19.84077 -19.75329 -18.93784 -18.14870 -17.64741 -17.15020 -16.61359 -16.02613 -15.93098 -15.54933 -15.04533 -14.92303 -14.68638 -14.65442 -14.47984 -14.24189 -14.00189 -13.65296 -13.42092 -12.88296 -12.73228 -12.53885 -12.38394 -11.96892 -11.86489 -11.69889 -11.62604 -11.21672 -11.11115 -10.88327 -10.79468 -10.66788 -10.62284 -10.58903 -10.49985 -10.15450 -10.10935 -9.92302 -9.65707 -9.22157 -8.61642 -8.39902 -6.86986 -5.76229 -3.09906 1.07889 2.29765 2.33906 2.50505 2.90202 3.37187 3.43008 3.44994 3.52842 3.91718 4.01405 4.17778 4.44183 4.49113 4.59369 4.67710 4.92027 4.94157 5.05663 5.14959 5.27510 5.30061 5.35859 5.46994 5.47558 5.55760 5.61260 5.67229 5.76610 5.88700 5.98333 6.14357 6.19962 6.28839 6.39386 6.45956 6.62753 6.66935 6.78962 6.92440 7.05913 7.39292 7.47184 7.53172 7.61992 7.78356 8.13961 8.20468 9.14312 9.78454 10.46293 11.36599 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.003099 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.307251 B = 9031.615463 C = 9713.255852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.161 3.839 15 H 0.018 0.982 16 C -0.117 4.117 17 C -0.132 4.132 18 C 0.102 3.898 19 N -0.594 5.594 20 C 0.524 3.476 21 O -0.521 6.521 22 C -0.114 4.114 23 C -0.123 4.123 24 C 0.528 3.472 25 O -0.500 6.500 26 N -0.677 5.677 27 C 0.531 3.469 28 O -0.498 6.498 29 C -0.144 4.144 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.412 0.588 45 H 0.127 0.873 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -18.772 1.210 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.166 4.166 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.051 3.949 15 H 0.035 0.965 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.021 4.021 19 N -0.326 5.326 20 C 0.311 3.689 21 O -0.397 6.397 22 C -0.136 4.136 23 C -0.163 4.163 24 C 0.317 3.683 25 O -0.372 6.372 26 N -0.342 5.342 27 C 0.319 3.681 28 O -0.370 6.370 29 C -0.184 4.184 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.252 0.748 45 H 0.145 0.855 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.991 -18.706 1.486 19.185 hybrid contribution 0.714 0.549 0.093 0.905 sum 4.704 -18.157 1.578 18.823 Atomic orbital electron populations 1.69950 1.04941 1.25180 1.56295 1.24829 0.95649 0.97661 1.01972 0.86163 0.78739 0.83760 0.77463 1.21689 1.21638 1.20625 1.18968 0.90821 0.82255 1.43774 0.90353 1.44068 1.01753 1.00422 1.85403 1.21738 0.83776 0.88492 1.01247 1.22937 0.94433 0.97520 1.01748 1.22487 0.98895 0.79158 0.98357 0.90056 1.20721 0.91256 0.86872 0.96027 0.96469 1.21446 0.98590 0.94480 1.01067 1.21851 0.97844 0.95600 1.01777 1.21813 0.81414 0.97827 1.01030 1.48006 1.13012 1.16201 1.55430 1.19851 0.85428 0.85080 0.78589 1.90763 1.18502 1.73380 1.57076 1.21530 0.96025 0.96846 0.99213 1.21788 0.98580 0.92198 1.03689 1.21000 0.80445 0.90799 0.76026 1.90807 1.53351 1.40119 1.52934 1.44909 1.13664 1.17876 1.57784 1.20803 0.84112 0.86102 0.77048 1.90819 1.20144 1.82083 1.43948 1.22194 1.01624 0.94274 1.00274 0.93669 0.93255 0.93688 0.91920 0.90299 0.91760 0.91268 0.90585 0.91627 0.90167 0.91082 0.87217 0.85879 0.85688 0.74807 0.85521 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.52 55.49 0.58 -25.80 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.50 29.56 -169.99 -5.02 16.47 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.09 9.95 -15.06 -0.15 -6.24 16 8 H 0.08 1.98 7.28 -52.49 -0.38 1.60 16 9 N -0.59 -14.28 3.35 -163.28 -0.55 -14.83 16 10 C 0.17 4.09 5.45 -1.69 -0.01 4.08 16 11 C -0.13 -2.45 4.95 -25.19 -0.12 -2.57 16 12 C 0.11 1.91 3.33 -66.79 -0.22 1.69 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.16 3.02 2.58 -68.36 -0.18 2.84 16 15 H 0.02 0.36 8.03 -51.93 -0.42 -0.06 16 16 C -0.12 -1.77 5.42 -27.24 -0.15 -1.92 16 17 C -0.13 -1.36 5.83 -26.66 -0.16 -1.52 16 18 C 0.10 0.92 5.54 -3.69 -0.02 0.90 16 19 N -0.59 -7.35 2.92 -164.27 -0.48 -7.83 16 20 C 0.52 6.18 6.99 -10.99 -0.08 6.10 16 21 O -0.52 -7.96 12.86 5.55 0.07 -7.89 16 22 C -0.11 -0.86 1.80 -91.52 -0.16 -1.02 16 23 C -0.12 -0.94 4.74 -27.82 -0.13 -1.07 16 24 C 0.53 4.45 7.74 -11.33 -0.09 4.36 16 25 O -0.50 -5.90 17.88 5.60 0.10 -5.80 16 26 N -0.68 -4.95 5.09 -11.75 -0.06 -5.01 16 27 C 0.53 4.28 7.74 -11.32 -0.09 4.19 16 28 O -0.50 -5.62 17.88 5.60 0.10 -5.52 16 29 C -0.14 -1.01 4.99 -27.81 -0.14 -1.15 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 1.29 7.48 -51.93 -0.39 0.90 16 32 H 0.04 1.19 7.59 -51.93 -0.39 0.80 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.08 1.56 6.33 -51.93 -0.33 1.23 16 35 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 36 H 0.07 1.13 7.72 -51.93 -0.40 0.73 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 39 H 0.08 0.50 4.42 -51.93 -0.23 0.27 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.61 7.65 -51.93 -0.40 0.21 16 42 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.13 0.97 7.93 -51.93 -0.41 0.56 16 44 H 0.41 2.69 8.79 -40.82 -0.36 2.33 16 45 H 0.13 0.83 5.22 -51.93 -0.27 0.56 16 46 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -33.55 355.52 -8.17 -41.71 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.48 Total: 0.67 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.79 Total: 8.46 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.50 Total: -53.46 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.27 Total: -19.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.55 -8.17 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.209 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds