Wall clock time and date at job start Tue Mar 31 2020 18:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47044 * 274.98770 * 3 2 1 5 5 H 1.48504 * 109.46927 * 34.98328 * 3 2 1 6 6 H 1.48497 * 109.47132 * 154.98367 * 3 2 1 7 7 C 1.38810 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00211 * 174.09428 * 7 2 1 9 9 N 1.36936 * 120.00392 * 354.09132 * 7 2 1 10 10 C 1.48383 * 126.55746 * 7.66741 * 9 7 2 11 11 C 1.55473 * 106.97615 * 174.50170 * 10 9 7 12 12 C 1.53440 * 101.66964 * 337.39859 * 11 10 9 13 13 H 1.08993 * 111.15116 * 281.18493 * 12 11 10 14 14 C 1.45015 * 126.56578 * 187.69276 * 9 7 2 15 15 H 1.09002 * 108.70603 * 95.87433 * 14 9 7 16 16 C 1.51087 * 119.19223 * 331.19793 * 14 9 7 17 17 C 1.53871 * 107.33798 * 176.10159 * 16 14 9 18 18 C 1.52245 * 111.58907 * 56.76555 * 17 16 14 19 19 N 1.45728 * 116.36503 * 152.71460 * 12 11 10 20 20 C 1.34773 * 122.23167 * 9.90608 * 19 12 11 21 21 O 1.21286 * 119.99996 * 3.84566 * 20 19 12 22 22 C 1.50696 * 120.00205 * 183.84104 * 20 19 12 23 23 C 1.53244 * 109.62622 * 184.27510 * 22 20 19 24 24 C 1.50578 * 109.16432 * 184.48082 * 23 22 20 25 25 O 1.21232 * 119.36052 * 209.07133 * 24 23 22 26 26 N 1.34141 * 121.28079 * 29.35227 * 24 23 22 27 27 C 1.34140 * 122.58552 * 358.91727 * 26 24 23 28 28 O 1.21230 * 119.36279 * 180.80101 * 27 26 24 29 29 C 1.50589 * 121.27725 * 1.08626 * 27 26 24 30 30 H 0.96994 * 120.00016 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.96211 * 55.12036 * 10 9 7 32 32 H 1.08999 * 109.99048 * 293.89868 * 10 9 7 33 33 H 1.09008 * 110.98607 * 219.30793 * 11 10 9 34 34 H 1.08996 * 110.98636 * 95.49842 * 11 10 9 35 35 H 1.09008 * 109.87824 * 295.55237 * 16 14 9 36 36 H 1.08996 * 109.88605 * 56.56316 * 16 14 9 37 37 H 1.09005 * 109.06586 * 177.45276 * 17 16 14 38 38 H 1.08998 * 109.06666 * 296.46094 * 17 16 14 39 39 H 1.09001 * 109.07425 * 191.22893 * 18 17 16 40 40 H 1.08996 * 108.98332 * 72.20394 * 18 17 16 41 41 H 1.08997 * 109.62604 * 304.64908 * 22 20 19 42 42 H 1.08996 * 109.52053 * 64.56876 * 23 22 20 43 43 H 1.09001 * 109.56929 * 304.41894 * 23 22 20 44 44 H 0.97001 * 118.70672 * 179.17891 * 26 24 23 45 45 H 1.09007 * 109.52225 * 210.74189 * 29 27 26 46 46 H 1.08997 * 109.52650 * 90.55021 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0860 -1.2047 -0.0957 9 7 1.3311 -2.3849 0.1231 10 6 -0.1417 -2.5643 0.1046 11 6 -0.4130 -4.0949 0.1362 12 6 0.9076 -4.6554 -0.4081 13 1 0.9532 -4.5705 -1.4937 14 6 1.9135 -3.7016 0.2964 15 1 1.9292 -3.9397 1.3600 16 6 3.2848 -3.9815 -0.2727 17 6 3.6737 -5.4092 0.1493 18 6 2.6422 -6.4300 -0.3110 19 7 1.2696 -5.9979 0.0283 20 6 0.4122 -6.7907 0.7011 21 8 -0.7254 -6.4209 0.9018 22 6 0.8667 -8.1366 1.2040 23 6 -0.3171 -8.8768 1.8355 24 6 0.1701 -10.1708 2.4318 25 8 -0.5852 -11.1168 2.4972 26 7 1.4221 -10.2954 2.8971 27 6 2.3157 -9.2964 2.8430 28 8 3.4365 -9.4778 3.2679 29 6 1.9518 -7.9520 2.2704 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5580 -2.1314 -0.8050 32 1 -0.5860 -2.0896 0.9795 33 1 -1.2465 -4.3572 -0.5155 34 1 -0.5927 -4.4386 1.1549 35 1 3.2562 -3.9112 -1.3601 36 1 4.0047 -3.2668 0.1260 37 1 4.6419 -5.6577 -0.2855 38 1 3.7502 -5.4510 1.2358 39 1 2.8463 -7.3854 0.1724 40 1 2.7221 -6.5524 -1.3912 41 1 1.2643 -8.7220 0.3749 42 1 -1.0651 -9.0868 1.0710 43 1 -0.7590 -8.2590 2.6173 44 1 1.6929 -11.1423 3.2847 45 1 2.8335 -7.4980 1.8181 46 1 1.5758 -7.3074 3.0648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049781376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:14 Heat of formation + Delta-G solvation = -91.595537 kcal Electronic energy + Delta-G solvation = -30564.083065 eV Core-core repulsion = 26453.657451 eV Total energy + Delta-G solvation = -4110.425615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.74278 -41.56029 -39.96076 -39.38908 -37.02108 -36.52244 -34.97318 -34.10453 -33.75552 -30.83482 -30.08400 -29.51242 -27.08183 -26.28008 -24.94413 -24.27389 -22.81058 -22.38093 -21.40934 -20.44783 -19.92631 -18.83751 -18.65018 -18.29492 -17.76360 -17.22159 -16.77433 -16.71797 -16.43062 -15.86024 -15.77434 -15.58911 -15.55849 -15.35461 -15.08985 -14.88912 -14.70721 -14.17574 -13.89932 -13.73417 -13.45061 -13.34135 -13.13315 -12.90329 -12.68059 -12.45840 -12.37205 -12.20199 -12.07332 -11.90380 -11.80897 -11.72418 -11.64929 -11.48548 -11.41465 -11.38626 -11.31978 -10.71603 -10.34620 -9.52645 -8.85637 -7.84095 -5.18944 0.39828 1.47010 1.48491 1.52593 1.57699 1.66784 1.70492 1.97303 2.51855 2.87200 3.15282 3.35093 3.36326 3.47784 3.55688 3.82625 3.91528 4.00946 4.04038 4.13777 4.16175 4.28277 4.35694 4.40607 4.49833 4.62227 4.63877 4.68438 4.74412 4.86765 4.88166 4.99166 5.00258 5.09639 5.16465 5.23501 5.35722 5.47598 5.53019 5.64992 5.66036 5.74417 5.75464 6.21291 6.27354 6.52295 6.75020 7.08203 7.18019 7.79024 8.48788 9.28516 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.003099 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.307251 B = 9031.615463 C = 9713.255852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.089 0.911 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.109 4.109 12 C 0.133 3.867 13 H 0.080 0.920 14 C 0.152 3.848 15 H 0.007 0.993 16 C -0.114 4.114 17 C -0.124 4.124 18 C 0.097 3.903 19 N -0.594 5.594 20 C 0.524 3.476 21 O -0.560 6.560 22 C -0.098 4.098 23 C -0.119 4.119 24 C 0.543 3.457 25 O -0.533 6.533 26 N -0.669 5.669 27 C 0.545 3.455 28 O -0.526 6.526 29 C -0.140 4.140 30 H 0.245 0.755 31 H 0.015 0.985 32 H 0.003 0.997 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.417 0.583 45 H 0.141 0.859 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -21.246 0.826 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.056 3.944 11 C -0.148 4.148 12 C 0.028 3.972 13 H 0.098 0.902 14 C 0.044 3.956 15 H 0.025 0.975 16 C -0.153 4.153 17 C -0.163 4.163 18 C -0.024 4.024 19 N -0.326 5.326 20 C 0.312 3.688 21 O -0.438 6.438 22 C -0.119 4.119 23 C -0.159 4.159 24 C 0.333 3.667 25 O -0.408 6.408 26 N -0.334 5.334 27 C 0.335 3.665 28 O -0.400 6.400 29 C -0.179 4.179 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.107 0.893 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.258 0.742 45 H 0.158 0.842 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.608 -21.236 1.103 22.268 hybrid contribution -0.093 1.291 0.249 1.318 sum 6.515 -19.945 1.351 21.026 Atomic orbital electron populations 1.70176 1.06481 1.25197 1.58301 1.25670 0.96459 1.01069 1.02884 0.85130 0.77934 0.79495 0.77210 1.21445 1.22597 1.18997 1.19390 0.91475 0.83305 1.41827 0.89348 1.44334 1.02087 1.02137 1.85190 1.21441 0.83983 0.91414 0.97603 1.22656 0.96278 0.94066 1.01796 1.21987 0.95958 0.81450 0.97818 0.90219 1.20952 0.94136 0.84648 0.95830 0.97547 1.21429 0.95512 0.97707 1.00618 1.21845 0.99746 0.92304 1.02363 1.22142 0.78681 0.98814 1.02762 1.48042 1.14777 1.14340 1.55484 1.20489 0.84723 0.86081 0.77498 1.90757 1.20375 1.74480 1.58234 1.21449 0.95982 0.94188 1.00308 1.21750 0.98750 0.91674 1.03730 1.20972 0.80197 0.90324 0.75164 1.90809 1.54273 1.41280 1.54440 1.44822 1.13205 1.18143 1.57193 1.20821 0.83413 0.86121 0.76157 1.90828 1.21364 1.82460 1.45373 1.22210 1.01791 0.93684 1.00251 0.94560 0.96702 0.97832 0.91660 0.90752 0.91976 0.92805 0.87242 0.91163 0.86262 0.89253 0.83869 0.85804 0.85832 0.74246 0.84168 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.69 10.52 21.65 0.23 -57.46 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.97 45.19 29.56 68.60 2.03 47.22 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.23 -12.48 9.95 84.03 0.84 -11.65 16 8 H 0.09 4.48 7.28 -2.91 -0.02 4.46 16 9 N -0.61 -30.47 3.35 -670.51 -2.25 -32.72 16 10 C 0.18 9.13 5.45 86.87 0.47 9.60 16 11 C -0.11 -4.30 4.95 31.59 0.16 -4.15 16 12 C 0.13 4.30 3.33 46.14 0.15 4.46 16 13 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 14 C 0.15 5.65 2.58 45.50 0.12 5.77 16 15 H 0.01 0.28 8.03 -2.39 -0.02 0.26 16 16 C -0.11 -3.22 5.42 30.26 0.16 -3.06 16 17 C -0.12 -2.01 5.83 30.64 0.18 -1.83 16 18 C 0.10 1.25 5.54 85.87 0.48 1.73 16 19 N -0.59 -12.91 2.92 -792.02 -2.31 -15.22 16 20 C 0.52 10.88 6.99 87.66 0.61 11.49 16 21 O -0.56 -16.40 12.86 -3.05 -0.04 -16.44 16 22 C -0.10 -1.08 1.80 -11.38 -0.02 -1.10 16 23 C -0.12 -1.52 4.74 29.89 0.14 -1.38 16 24 C 0.54 7.81 7.74 87.72 0.68 8.49 16 25 O -0.53 -11.71 17.88 -2.88 -0.05 -11.77 16 26 N -0.67 -7.87 5.09 -428.63 -2.18 -10.05 16 27 C 0.54 6.88 7.74 87.72 0.68 7.56 16 28 O -0.53 -10.23 17.88 -2.88 -0.05 -10.28 16 29 C -0.14 -1.39 4.99 29.90 0.15 -1.24 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.01 0.83 7.48 -2.39 -0.02 0.81 16 32 H 0.00 0.20 7.59 -2.39 -0.02 0.18 16 33 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.07 3.01 6.33 -2.39 -0.02 2.99 16 35 H 0.06 1.77 8.12 -2.38 -0.02 1.75 16 36 H 0.05 1.67 7.72 -2.39 -0.02 1.65 16 37 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 39 H 0.12 0.69 4.42 -2.39 -0.01 0.68 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.14 0.74 7.65 -2.39 -0.02 0.72 16 42 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.12 1.69 7.93 -2.39 -0.02 1.67 16 44 H 0.42 4.43 8.79 -92.71 -0.81 3.62 16 45 H 0.14 1.08 5.22 -2.38 -0.01 1.07 16 46 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -78.11 355.52 0.85 -77.27 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.21 Total: 8.12 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.26 Total: 21.33 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -6.51 Total: -115.45 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.14 Total: -38.49 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -78.11 0.85 -77.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.329 kcal (2) G-P(sol) polarization free energy of solvation -78.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds