Wall clock time and date at job start Tue Mar 31 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99627 * 2 1 4 4 H 1.48502 * 109.47385 * 269.99911 * 3 2 1 5 5 H 1.48500 * 109.47713 * 30.00093 * 3 2 1 6 6 H 1.48500 * 109.47040 * 149.99944 * 3 2 1 7 7 C 1.38810 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00136 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.47124 * 125.76790 * 359.95631 * 9 7 2 11 11 C 1.54562 * 107.25681 * 182.63506 * 10 9 7 12 12 C 1.54425 * 102.44835 * 21.67045 * 11 10 9 13 13 H 1.09004 * 110.71704 * 80.56533 * 12 11 10 14 14 C 1.48209 * 125.77035 * 180.02562 * 9 7 2 15 15 H 1.09002 * 112.30105 * 33.41459 * 14 9 7 16 16 C 1.53016 * 107.11340 * 270.82075 * 14 9 7 17 17 C 1.52738 * 110.80148 * 191.92232 * 16 14 9 18 18 C 1.53463 * 108.44032 * 63.76941 * 17 16 14 19 19 N 1.45122 * 111.60783 * 203.42271 * 12 11 10 20 20 C 1.34776 * 119.57381 * 248.63479 * 19 12 11 21 21 O 1.21275 * 120.00295 * 355.51539 * 20 19 12 22 22 C 1.50701 * 119.99591 * 175.51436 * 20 19 12 23 23 C 1.53234 * 109.62465 * 278.28996 * 22 20 19 24 24 C 1.50587 * 109.15728 * 184.64487 * 23 22 20 25 25 O 1.21226 * 119.36449 * 209.11784 * 24 23 22 26 26 N 1.34147 * 121.27756 * 29.11172 * 24 23 22 27 27 C 1.34143 * 122.58413 * 359.45811 * 26 24 23 28 28 O 1.21229 * 119.35358 * 180.54254 * 27 26 24 29 29 C 1.50585 * 121.28198 * 0.51913 * 27 26 24 30 30 H 0.96999 * 120.00581 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88799 * 302.05343 * 10 9 7 32 32 H 1.09009 * 109.88255 * 63.22551 * 10 9 7 33 33 H 1.09007 * 110.81119 * 263.43035 * 11 10 9 34 34 H 1.09003 * 110.81386 * 139.91151 * 11 10 9 35 35 H 1.09002 * 109.21056 * 312.26000 * 16 14 9 36 36 H 1.08999 * 109.21239 * 71.62312 * 16 14 9 37 37 H 1.08997 * 109.64016 * 183.46118 * 17 16 14 38 38 H 1.09005 * 109.63639 * 303.87736 * 17 16 14 39 39 H 1.08995 * 109.83158 * 61.44995 * 18 17 16 40 40 H 1.08998 * 109.83041 * 182.33751 * 18 17 16 41 41 H 1.09005 * 109.61836 * 38.85169 * 22 20 19 42 42 H 1.08994 * 109.52681 * 304.57082 * 23 22 20 43 43 H 1.09006 * 109.52344 * 64.75755 * 23 22 20 44 44 H 0.96997 * 118.70606 * 179.47325 * 26 24 23 45 45 H 1.09003 * 109.51974 * 211.02068 * 29 27 26 46 46 H 1.09004 * 109.52412 * 90.83523 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1381 -2.5360 -0.0014 11 6 -0.4460 -4.0491 0.0650 12 6 0.8585 -4.6288 0.6540 13 1 0.8815 -4.5042 1.7367 14 6 1.9340 -3.7395 -0.0017 15 1 2.8710 -3.7715 0.5543 16 6 2.1390 -4.1409 -1.4640 17 6 2.4851 -5.6243 -1.5759 18 6 1.2885 -6.4414 -1.0704 19 7 1.0227 -6.0297 0.3127 20 6 0.9309 -6.9649 1.2788 21 8 0.7936 -6.6297 2.4362 22 6 0.9989 -8.4272 0.9208 23 6 -0.3751 -8.9030 0.4372 24 6 -0.3255 -10.3878 0.1913 25 8 -1.0508 -10.8759 -0.6485 26 7 0.5059 -11.1810 0.8836 27 6 1.3431 -10.7087 1.8192 28 8 2.0767 -11.4774 2.4028 29 6 1.3897 -9.2423 2.1582 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5615 -2.0329 0.8680 32 1 -0.5536 -2.1128 -0.9160 33 1 -0.6330 -4.4504 -0.9311 34 1 -1.2899 -4.2440 0.7268 35 1 1.2238 -3.9430 -2.0220 36 1 2.9518 -3.5507 -1.8874 37 1 2.6870 -5.8759 -2.6171 38 1 3.3641 -5.8422 -0.9692 39 1 0.4149 -6.2402 -1.6905 40 1 1.5270 -7.5045 -1.1016 41 1 1.7390 -8.5776 0.1348 42 1 -1.1248 -8.6843 1.1975 43 1 -0.6334 -8.3891 -0.4887 44 1 0.5016 -12.1335 0.7002 45 1 2.3991 -8.9721 2.4686 46 1 0.6905 -9.0332 2.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049781380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:24 Heat of formation + Delta-G solvation = -74.339556 kcal Electronic energy + Delta-G solvation = -30259.610939 eV Core-core repulsion = 26149.933600 eV Total energy + Delta-G solvation = -4109.677339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02923 -40.50186 -39.23488 -38.33169 -35.83820 -35.42455 -34.16996 -32.55270 -32.22598 -29.37241 -29.10361 -28.39928 -26.02784 -24.38822 -24.12722 -23.62258 -22.11661 -20.49251 -20.08842 -19.67595 -18.28262 -18.21449 -17.84660 -17.36081 -16.95936 -16.41887 -15.67193 -15.55296 -15.08772 -14.83860 -14.79185 -14.55140 -14.40837 -14.33586 -13.94853 -13.62400 -13.49754 -13.01371 -12.82738 -12.55284 -12.22307 -12.06190 -11.90179 -11.73633 -11.44029 -11.20718 -11.09168 -11.05787 -10.85970 -10.70691 -10.69577 -10.64575 -10.56869 -10.18635 -10.12656 -9.74257 -9.71207 -9.63507 -8.68292 -8.44948 -6.92485 -5.76390 -3.10847 1.04580 2.26239 2.31640 2.40877 2.89266 3.37003 3.42582 3.44269 3.50479 3.91147 4.00203 4.12950 4.38419 4.44748 4.54956 4.83217 4.90104 4.99905 5.04400 5.14821 5.24024 5.29492 5.40571 5.42755 5.47605 5.53879 5.56002 5.60677 5.76366 5.87498 6.00115 6.09820 6.21799 6.26069 6.36052 6.40361 6.48402 6.61887 6.83916 6.89551 6.96963 7.35892 7.38978 7.49515 7.54537 7.76652 8.05754 8.18419 9.15116 9.74780 10.39740 11.34771 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002765 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.461337 B =10123.879494 C =10266.300508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.128 3.872 13 H 0.104 0.896 14 C 0.157 3.843 15 H 0.060 0.940 16 C -0.131 4.131 17 C -0.134 4.134 18 C 0.100 3.900 19 N -0.586 5.586 20 C 0.519 3.481 21 O -0.532 6.532 22 C -0.116 4.116 23 C -0.134 4.134 24 C 0.531 3.469 25 O -0.498 6.498 26 N -0.676 5.676 27 C 0.529 3.471 28 O -0.499 6.499 29 C -0.126 4.126 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.413 0.587 45 H 0.121 0.879 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -19.527 -1.666 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.122 0.878 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.171 4.171 17 C -0.173 4.173 18 C -0.023 4.023 19 N -0.317 5.317 20 C 0.305 3.695 21 O -0.409 6.409 22 C -0.138 4.138 23 C -0.174 4.174 24 C 0.320 3.680 25 O -0.370 6.370 26 N -0.342 5.342 27 C 0.318 3.682 28 O -0.371 6.371 29 C -0.166 4.166 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.252 0.748 45 H 0.139 0.861 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.551 -19.465 -1.128 19.505 hybrid contribution 0.417 0.536 -0.315 0.748 sum 0.968 -18.929 -1.444 19.009 Atomic orbital electron populations 1.69945 1.04870 1.25137 1.56835 1.24792 0.95707 0.97643 1.02104 0.86126 0.78625 0.83502 0.77530 1.21639 1.21675 1.20682 1.19021 0.90418 0.82172 1.44013 0.90430 1.44692 1.01448 0.99257 1.86778 1.21181 0.84288 0.87674 1.01319 1.23124 0.96259 0.99890 0.99776 1.21871 0.96793 0.77604 1.01295 0.87789 1.21327 0.94537 0.86194 0.93154 0.92235 1.22139 1.02071 0.92993 0.99904 1.21933 0.97203 0.97256 1.00870 1.21974 0.99117 0.98773 0.82416 1.47624 1.69217 1.06973 1.07846 1.19988 0.77250 0.86681 0.85608 1.90737 1.49347 1.81953 1.18843 1.21567 0.98549 0.94214 0.99482 1.21922 0.98252 0.90550 1.06638 1.20780 0.78036 0.89850 0.79344 1.90820 1.38819 1.76217 1.31139 1.44901 1.37960 1.13910 1.37445 1.20958 0.77868 0.91981 0.77400 1.90810 1.38798 1.59038 1.48497 1.21831 1.07716 0.87803 0.99218 0.93691 0.92994 0.93999 0.92168 0.91975 0.91761 0.92047 0.91166 0.91698 0.90718 0.90131 0.87077 0.85969 0.85919 0.74762 0.86070 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.33 55.49 0.57 -25.55 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.03 10.29 -15.06 -0.16 -6.19 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.11 2.91 -162.20 -0.47 -14.58 16 10 C 0.18 4.10 5.19 -2.88 -0.01 4.09 16 11 C -0.15 -2.60 6.08 -25.16 -0.15 -2.76 16 12 C 0.13 2.11 3.12 -67.30 -0.21 1.90 16 13 H 0.10 1.98 6.94 -51.93 -0.36 1.62 16 14 C 0.16 2.91 3.60 -66.36 -0.24 2.67 16 15 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.13 -2.05 5.10 -26.86 -0.14 -2.18 16 17 C -0.13 -1.45 6.11 -26.63 -0.16 -1.61 16 18 C 0.10 0.93 5.58 -3.67 -0.02 0.91 16 19 N -0.59 -7.13 2.73 -165.08 -0.45 -7.58 16 20 C 0.52 5.92 6.82 -10.98 -0.07 5.85 16 21 O -0.53 -8.08 15.28 5.56 0.08 -7.99 16 22 C -0.12 -0.83 1.79 -91.53 -0.16 -0.99 16 23 C -0.13 -0.85 5.29 -27.82 -0.15 -0.99 16 24 C 0.53 4.03 7.74 -11.32 -0.09 3.94 16 25 O -0.50 -5.43 17.88 5.60 0.10 -5.33 16 26 N -0.68 -4.66 5.09 -11.75 -0.06 -4.72 16 27 C 0.53 4.25 7.74 -11.32 -0.09 4.17 16 28 O -0.50 -5.73 17.88 5.60 0.10 -5.63 16 29 C -0.13 -0.91 4.93 -27.82 -0.14 -1.05 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 32 H 0.04 1.05 7.60 -51.92 -0.39 0.66 16 33 H 0.06 0.94 6.81 -51.93 -0.35 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.09 7.12 -51.93 -0.37 0.72 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.68 7.53 -51.93 -0.39 0.28 16 40 H 0.08 0.50 5.33 -51.93 -0.28 0.22 16 41 H 0.11 0.59 6.18 -51.93 -0.32 0.27 16 42 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 0.70 7.71 -51.93 -0.40 0.30 16 44 H 0.41 2.54 8.79 -40.82 -0.36 2.18 16 45 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.13 0.94 7.74 -51.93 -0.40 0.53 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -33.15 360.01 -8.12 -41.27 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.51 Total: 0.71 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.89 Total: 7.48 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.41 Total: -52.43 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.29 Total: -18.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -8.12 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.071 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds