Wall clock time and date at job start Tue Mar 31 2020 18:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99627 * 2 1 4 4 H 1.48502 * 109.47385 * 269.99911 * 3 2 1 5 5 H 1.48500 * 109.47713 * 30.00093 * 3 2 1 6 6 H 1.48500 * 109.47040 * 149.99944 * 3 2 1 7 7 C 1.38810 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00136 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.47124 * 125.76790 * 359.95631 * 9 7 2 11 11 C 1.54562 * 107.25681 * 182.63506 * 10 9 7 12 12 C 1.54425 * 102.44835 * 21.67045 * 11 10 9 13 13 H 1.09004 * 110.71704 * 80.56533 * 12 11 10 14 14 C 1.48209 * 125.77035 * 180.02562 * 9 7 2 15 15 H 1.09002 * 112.30105 * 33.41459 * 14 9 7 16 16 C 1.53016 * 107.11340 * 270.82075 * 14 9 7 17 17 C 1.52738 * 110.80148 * 191.92232 * 16 14 9 18 18 C 1.53463 * 108.44032 * 63.76941 * 17 16 14 19 19 N 1.45122 * 111.60783 * 203.42271 * 12 11 10 20 20 C 1.34776 * 119.57381 * 248.63479 * 19 12 11 21 21 O 1.21275 * 120.00295 * 355.51539 * 20 19 12 22 22 C 1.50701 * 119.99591 * 175.51436 * 20 19 12 23 23 C 1.53234 * 109.62465 * 278.28996 * 22 20 19 24 24 C 1.50587 * 109.15728 * 184.64487 * 23 22 20 25 25 O 1.21226 * 119.36449 * 209.11784 * 24 23 22 26 26 N 1.34147 * 121.27756 * 29.11172 * 24 23 22 27 27 C 1.34143 * 122.58413 * 359.45811 * 26 24 23 28 28 O 1.21229 * 119.35358 * 180.54254 * 27 26 24 29 29 C 1.50585 * 121.28198 * 0.51913 * 27 26 24 30 30 H 0.96999 * 120.00581 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88799 * 302.05343 * 10 9 7 32 32 H 1.09009 * 109.88255 * 63.22551 * 10 9 7 33 33 H 1.09007 * 110.81119 * 263.43035 * 11 10 9 34 34 H 1.09003 * 110.81386 * 139.91151 * 11 10 9 35 35 H 1.09002 * 109.21056 * 312.26000 * 16 14 9 36 36 H 1.08999 * 109.21239 * 71.62312 * 16 14 9 37 37 H 1.08997 * 109.64016 * 183.46118 * 17 16 14 38 38 H 1.09005 * 109.63639 * 303.87736 * 17 16 14 39 39 H 1.08995 * 109.83158 * 61.44995 * 18 17 16 40 40 H 1.08998 * 109.83041 * 182.33751 * 18 17 16 41 41 H 1.09005 * 109.61836 * 38.85169 * 22 20 19 42 42 H 1.08994 * 109.52681 * 304.57082 * 23 22 20 43 43 H 1.09006 * 109.52344 * 64.75755 * 23 22 20 44 44 H 0.96997 * 118.70606 * 179.47325 * 26 24 23 45 45 H 1.09003 * 109.51974 * 211.02068 * 29 27 26 46 46 H 1.09004 * 109.52412 * 90.83523 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1381 -2.5360 -0.0014 11 6 -0.4460 -4.0491 0.0650 12 6 0.8585 -4.6288 0.6540 13 1 0.8815 -4.5042 1.7367 14 6 1.9340 -3.7395 -0.0017 15 1 2.8710 -3.7715 0.5543 16 6 2.1390 -4.1409 -1.4640 17 6 2.4851 -5.6243 -1.5759 18 6 1.2885 -6.4414 -1.0704 19 7 1.0227 -6.0297 0.3127 20 6 0.9309 -6.9649 1.2788 21 8 0.7936 -6.6297 2.4362 22 6 0.9989 -8.4272 0.9208 23 6 -0.3751 -8.9030 0.4372 24 6 -0.3255 -10.3878 0.1913 25 8 -1.0508 -10.8759 -0.6485 26 7 0.5059 -11.1810 0.8836 27 6 1.3431 -10.7087 1.8192 28 8 2.0767 -11.4774 2.4028 29 6 1.3897 -9.2423 2.1582 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5615 -2.0329 0.8680 32 1 -0.5536 -2.1128 -0.9160 33 1 -0.6330 -4.4504 -0.9311 34 1 -1.2899 -4.2440 0.7268 35 1 1.2238 -3.9430 -2.0220 36 1 2.9518 -3.5507 -1.8874 37 1 2.6870 -5.8759 -2.6171 38 1 3.3641 -5.8422 -0.9692 39 1 0.4149 -6.2402 -1.6905 40 1 1.5270 -7.5045 -1.1016 41 1 1.7390 -8.5776 0.1348 42 1 -1.1248 -8.6843 1.1975 43 1 -0.6334 -8.3891 -0.4887 44 1 0.5016 -12.1335 0.7002 45 1 2.3991 -8.9721 2.4686 46 1 0.6905 -9.0332 2.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049781380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:23 Heat of formation + Delta-G solvation = -98.265860 kcal Electronic energy + Delta-G solvation = -30260.648462 eV Core-core repulsion = 26149.933600 eV Total energy + Delta-G solvation = -4110.714862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71956 -41.55348 -39.94742 -39.57918 -36.79648 -36.54015 -34.92812 -33.99200 -33.68848 -30.87378 -29.95403 -29.73816 -27.11447 -26.01196 -25.23090 -24.24880 -23.24857 -21.96745 -21.38205 -20.31669 -19.45335 -18.88280 -18.76414 -18.59473 -18.11721 -17.26713 -16.76845 -16.61475 -16.39971 -16.02445 -15.73519 -15.47857 -15.41103 -15.24174 -15.03633 -14.89520 -14.59360 -14.22059 -13.99712 -13.69321 -13.57157 -13.35509 -13.08538 -12.79205 -12.61819 -12.48780 -12.38494 -12.26489 -12.21706 -12.04558 -11.95474 -11.79675 -11.59223 -11.47872 -11.37924 -11.34423 -11.13192 -10.70493 -10.68042 -9.58597 -8.86706 -7.82972 -5.18060 0.40899 1.46146 1.47529 1.48798 1.55896 1.64824 1.71037 1.97177 2.50734 2.89940 3.18790 3.35325 3.40134 3.51046 3.60500 3.81719 3.86326 3.94795 4.04537 4.10566 4.17953 4.23141 4.39883 4.42716 4.53156 4.63005 4.63292 4.70578 4.79038 4.84142 4.89328 4.92320 5.01211 5.03923 5.12819 5.24350 5.41508 5.43769 5.58849 5.65142 5.69597 5.75861 5.78279 6.20731 6.28990 6.43915 6.76277 7.10847 7.13181 7.78109 8.42490 9.26727 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002765 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.461337 B =10123.879494 C =10266.300508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.190 3.810 11 C -0.132 4.132 12 C 0.147 3.853 13 H 0.074 0.926 14 C 0.150 3.850 15 H 0.048 0.952 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.095 3.905 19 N -0.585 5.585 20 C 0.522 3.478 21 O -0.572 6.572 22 C -0.100 4.100 23 C -0.130 4.130 24 C 0.545 3.455 25 O -0.528 6.528 26 N -0.669 5.669 27 C 0.544 3.456 28 O -0.534 6.534 29 C -0.123 4.123 30 H 0.245 0.755 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.140 0.860 44 H 0.417 0.583 45 H 0.122 0.878 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -22.157 -3.011 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.064 3.936 11 C -0.171 4.171 12 C 0.041 3.959 13 H 0.092 0.908 14 C 0.043 3.957 15 H 0.066 0.934 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.026 4.026 19 N -0.315 5.315 20 C 0.310 3.690 21 O -0.451 6.451 22 C -0.122 4.122 23 C -0.169 4.169 24 C 0.335 3.665 25 O -0.402 6.402 26 N -0.334 5.334 27 C 0.334 3.666 28 O -0.408 6.408 29 C -0.163 4.163 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.158 0.842 44 H 0.257 0.743 45 H 0.140 0.860 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.367 -22.157 -2.499 22.339 hybrid contribution 0.207 1.330 0.149 1.354 sum 1.573 -20.827 -2.350 21.019 Atomic orbital electron populations 1.70165 1.06170 1.25120 1.58499 1.25574 0.96539 1.00768 1.02929 0.85144 0.77639 0.79534 0.77419 1.21271 1.22382 1.19586 1.19370 0.90837 0.83612 1.42479 0.90224 1.44956 1.02101 1.00625 1.86721 1.20867 0.83856 0.91158 0.97688 1.22918 0.96983 0.95654 1.01532 1.21252 0.95167 0.80256 0.99187 0.90781 1.21556 0.94423 0.84357 0.95402 0.93390 1.21919 1.00847 0.96728 0.96598 1.21899 0.98099 0.93270 1.03093 1.22322 0.98952 1.00968 0.80322 1.47591 1.69397 1.04944 1.09618 1.20614 0.75675 0.88035 0.84647 1.90739 1.50812 1.82842 1.20722 1.21505 1.00027 0.90458 1.00167 1.21965 0.97738 0.89520 1.07703 1.20853 0.77135 0.90113 0.78388 1.90830 1.40049 1.76765 1.32555 1.44827 1.37396 1.14300 1.36857 1.20932 0.77071 0.91846 0.76723 1.90813 1.40347 1.59870 1.49808 1.21801 1.07912 0.87151 0.99391 0.94520 0.97338 0.97278 0.89624 0.91084 0.92990 0.93895 0.88161 0.91196 0.89441 0.85609 0.84048 0.85286 0.84224 0.74265 0.85958 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.57 10.33 21.65 0.22 -56.34 16 2 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.23 -12.77 10.29 84.03 0.86 -11.91 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.62 -30.31 2.91 -667.09 -1.94 -32.25 16 10 C 0.19 9.04 5.19 86.79 0.45 9.49 16 11 C -0.13 -4.47 6.08 31.61 0.19 -4.28 16 12 C 0.15 4.74 3.12 46.14 0.14 4.89 16 13 H 0.07 2.86 6.94 -2.38 -0.02 2.85 16 14 C 0.15 5.57 3.60 45.07 0.16 5.73 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.12 -3.62 5.10 30.51 0.16 -3.46 16 17 C -0.13 -2.19 6.11 30.66 0.19 -2.00 16 18 C 0.10 1.28 5.58 86.49 0.48 1.76 16 19 N -0.59 -12.43 2.73 -794.58 -2.17 -14.60 16 20 C 0.52 10.33 6.82 87.66 0.60 10.93 16 21 O -0.57 -16.57 15.28 -3.02 -0.05 -16.62 16 22 C -0.10 -1.00 1.79 -11.38 -0.02 -1.02 16 23 C -0.13 -1.07 5.29 29.89 0.16 -0.91 16 24 C 0.55 6.28 7.74 87.72 0.68 6.96 16 25 O -0.53 -9.86 17.88 -2.86 -0.05 -9.91 16 26 N -0.67 -7.22 5.09 -428.62 -2.18 -9.40 16 27 C 0.54 7.28 7.74 87.72 0.68 7.96 16 28 O -0.53 -11.27 17.88 -2.87 -0.05 -11.33 16 29 C -0.12 -1.42 4.93 29.89 0.15 -1.28 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.01 0.46 7.30 -2.39 -0.02 0.44 16 32 H 0.01 0.48 7.60 -2.38 -0.02 0.46 16 33 H 0.09 2.48 6.81 -2.38 -0.02 2.47 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.68 7.12 -2.39 -0.02 1.67 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.07 7.53 -2.39 -0.02 1.05 16 40 H 0.13 0.64 5.33 -2.39 -0.01 0.63 16 41 H 0.14 0.62 6.18 -2.38 -0.01 0.60 16 42 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.14 0.81 7.71 -2.38 -0.02 0.80 16 44 H 0.42 4.09 8.79 -92.71 -0.81 3.27 16 45 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.13 1.58 7.74 -2.38 -0.02 1.56 16 Total: -1.00 -77.79 360.01 1.36 -76.43 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.21 Total: 6.88 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.34 Total: 19.65 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -6.07 Total: -112.60 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.15 Total: -37.85 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -77.79 1.36 -76.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds