Wall clock time and date at job start Tue Mar 31 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48505 * 109.46901 * 239.99935 * 3 2 1 5 5 H 1.48501 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47351 * 119.99828 * 3 2 1 7 7 C 1.38815 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.48380 * 126.56286 * 359.97438 * 9 7 2 11 11 C 1.55470 * 106.97226 * 174.49734 * 10 9 7 12 12 C 1.53429 * 101.67678 * 337.40086 * 11 10 9 13 13 H 1.09006 * 111.14066 * 282.01588 * 12 11 10 14 14 C 1.45026 * 126.55792 * 179.97438 * 9 7 2 15 15 H 1.09002 * 108.70614 * 95.87074 * 14 9 7 16 16 C 1.51087 * 118.75975 * 330.92782 * 14 9 7 17 17 C 1.54988 * 106.76852 * 175.97459 * 16 14 9 18 18 C 1.52717 * 111.43101 * 57.27655 * 17 16 14 19 19 N 1.45714 * 116.37908 * 152.72950 * 12 11 10 20 20 C 1.34782 * 122.23074 * 9.90594 * 19 12 11 21 21 O 1.21281 * 119.99982 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99985 * 180.02562 * 20 19 12 23 23 N 1.46495 * 109.47000 * 180.02562 * 22 20 19 24 24 C 1.33879 * 122.76153 * 269.70676 * 23 22 20 25 25 O 1.21229 * 125.39328 * 359.97438 * 24 23 22 26 26 C 1.51312 * 109.20794 * 179.84511 * 24 23 22 27 27 C 1.54238 * 103.55346 * 0.38819 * 26 24 23 28 28 C 1.33875 * 122.76190 * 90.00112 * 23 22 20 29 29 O 1.21222 * 125.39985 * 359.97438 * 28 23 22 30 30 H 0.97000 * 119.99443 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.96316 * 55.11797 * 10 9 7 32 32 H 1.08995 * 109.99038 * 293.89073 * 10 9 7 33 33 H 1.09001 * 110.98842 * 219.29962 * 11 10 9 34 34 H 1.09009 * 110.98750 * 95.49815 * 11 10 9 35 35 H 1.08998 * 109.88249 * 295.85350 * 16 14 9 36 36 H 1.09005 * 109.87755 * 56.93257 * 16 14 9 37 37 H 1.08995 * 109.29777 * 296.65336 * 17 16 14 38 38 H 1.09004 * 108.87484 * 177.62092 * 17 16 14 39 39 H 1.09000 * 109.16008 * 190.82915 * 18 17 16 40 40 H 1.09002 * 109.15800 * 71.64867 * 18 17 16 41 41 H 1.09004 * 109.47049 * 300.00009 * 22 20 19 42 42 H 1.08997 * 109.47249 * 59.99829 * 22 20 19 43 43 H 1.09003 * 110.79669 * 241.78512 * 26 24 23 44 44 H 1.08998 * 110.41796 * 118.81275 * 26 24 23 45 45 H 1.08998 * 110.60289 * 241.26424 * 27 26 24 46 46 H 1.08997 * 110.60431 * 118.29938 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4303 -4.0799 -0.1421 12 6 0.8712 -4.5778 -0.7841 13 1 0.8951 -4.3519 -1.8502 14 6 1.9024 -3.7187 0.0005 15 1 1.9446 -4.0814 1.0276 16 6 3.2537 -3.9251 -0.6431 17 6 3.6451 -5.4044 -0.3964 18 6 2.5917 -6.3604 -0.9519 19 7 1.2343 -5.9640 -0.5201 20 6 0.3887 -6.8274 0.0767 21 8 -0.7167 -6.4590 0.4130 22 6 0.8169 -8.2507 0.3260 23 7 -0.2717 -8.9806 0.9804 24 6 -0.4014 -9.0479 2.3112 25 8 0.3425 -8.5301 3.1163 26 6 -1.6253 -9.8701 2.6511 27 6 -2.1807 -10.2789 1.2715 28 6 -1.2154 -9.6399 0.2971 29 8 -1.2857 -9.7131 -0.9109 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5852 -2.0180 -0.8399 32 1 -0.5661 -2.1880 0.9371 33 1 -1.2826 -4.2594 -0.7974 34 1 -0.5859 -4.5412 0.8333 35 1 3.1906 -3.7198 -1.7117 36 1 3.9889 -3.2663 -0.1809 37 1 3.7514 -5.5750 0.6749 38 1 4.5992 -5.6028 -0.8848 39 1 2.8002 -7.3690 -0.5951 40 1 2.6383 -6.3504 -2.0409 41 1 1.0559 -8.7298 -0.6235 42 1 1.6975 -8.2580 0.9683 43 1 -2.3549 -9.2710 3.1961 44 1 -1.3435 -10.7512 3.2276 45 1 -3.1864 -9.8831 1.1303 46 1 -2.1752 -11.3633 1.1618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049889047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:40 Heat of formation + Delta-G solvation = -49.717859 kcal Electronic energy + Delta-G solvation = -30498.291106 eV Core-core repulsion = 26389.681444 eV Total energy + Delta-G solvation = -4108.609662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16938 -40.23036 -38.76400 -37.79125 -36.01153 -35.46665 -33.73193 -32.60846 -32.16707 -29.37833 -28.37755 -27.76758 -26.45808 -24.51488 -24.32995 -22.64179 -21.55212 -21.29671 -20.04288 -19.59151 -18.92273 -17.65563 -17.32715 -16.73334 -16.66992 -16.04803 -15.64315 -15.30811 -14.88012 -14.67028 -14.42222 -14.34358 -14.18509 -14.14839 -13.92038 -13.60278 -13.49054 -13.08958 -13.05898 -12.46913 -12.37048 -12.18094 -11.86349 -11.70912 -11.57231 -11.15583 -10.91449 -10.84759 -10.72286 -10.66276 -10.52472 -10.28466 -10.18977 -10.11021 -10.00246 -9.85286 -9.59540 -9.01234 -8.57056 -8.28873 -6.81535 -5.68210 -3.02684 1.30274 2.07558 2.48867 2.65697 3.14249 3.41832 3.45966 3.47559 3.77593 3.91201 4.11023 4.34541 4.50488 4.53422 4.73774 4.77362 4.91579 5.05250 5.08937 5.09851 5.23260 5.26112 5.28675 5.35545 5.43174 5.56537 5.63105 5.75677 5.85722 5.98790 6.04842 6.23330 6.28425 6.38337 6.53221 6.54613 6.71841 6.75597 6.89248 7.07200 7.17169 7.48838 7.57725 7.61403 7.68473 7.85134 8.25371 8.28104 9.20891 9.84819 10.53172 11.43764 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.003131 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.407589 B = 8941.690212 C = 9403.128253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.116 3.884 13 H 0.082 0.918 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.109 3.891 19 N -0.595 5.595 20 C 0.506 3.494 21 O -0.524 6.524 22 C 0.078 3.922 23 N -0.558 5.558 24 C 0.530 3.470 25 O -0.477 6.477 26 C -0.154 4.154 27 C -0.154 4.154 28 C 0.532 3.468 29 O -0.481 6.481 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -24.048 1.114 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.012 3.988 13 H 0.100 0.900 14 C 0.049 3.951 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.328 5.328 20 C 0.292 3.708 21 O -0.400 6.400 22 C -0.047 4.047 23 N -0.301 5.301 24 C 0.319 3.681 25 O -0.348 6.348 26 C -0.193 4.193 27 C -0.193 4.193 28 C 0.321 3.679 29 O -0.352 6.352 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.450 -23.349 1.089 23.379 hybrid contribution 0.635 1.038 -0.104 1.222 sum 1.086 -22.311 0.985 22.359 Atomic orbital electron populations 1.69942 1.04894 1.25170 1.56680 1.24810 0.95672 0.97631 1.02224 0.86220 0.78464 0.83343 0.77838 1.21190 1.21613 1.21205 1.18942 0.90300 0.82210 1.44119 0.90390 1.44080 1.01782 0.99327 1.86541 1.21736 0.83682 0.88679 1.01087 1.22958 0.94552 0.97974 1.01280 1.22435 0.98888 0.78121 0.99363 0.90017 1.20785 0.91426 0.87211 0.95682 0.96461 1.21647 0.98526 0.93951 1.01278 1.22099 0.97516 0.95713 1.01612 1.21762 0.81586 0.98162 0.99871 1.47944 1.14330 1.11551 1.58976 1.20455 0.85299 0.86848 0.78229 1.90718 1.20767 1.77554 1.50933 1.21655 0.90422 0.91519 1.01079 1.46326 1.27309 1.46944 1.09527 1.20832 0.86636 0.79545 0.81077 1.90805 1.47049 1.45129 1.51788 1.22453 0.96286 1.02015 0.98592 1.22451 1.00679 1.03790 0.92421 1.20813 0.81266 0.77090 0.88735 1.90781 1.72520 1.58704 1.13239 0.93674 0.92541 0.94294 0.92160 0.90167 0.91576 0.91371 0.91632 0.90751 0.90634 0.91063 0.86181 0.86130 0.85862 0.86162 0.85924 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.46 55.49 0.58 -26.96 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.08 2.07 7.27 -52.49 -0.38 1.69 16 9 N -0.59 -15.42 3.35 -163.30 -0.55 -15.97 16 10 C 0.17 4.46 5.47 -1.69 -0.01 4.45 16 11 C -0.13 -2.83 5.01 -25.20 -0.13 -2.95 16 12 C 0.12 2.25 3.32 -66.82 -0.22 2.03 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 14 C 0.16 3.35 2.57 -68.37 -0.18 3.17 16 15 H 0.02 0.41 8.03 -51.93 -0.42 0.00 16 16 C -0.12 -1.97 5.50 -26.64 -0.15 -2.11 16 17 C -0.13 -1.61 5.95 -25.83 -0.15 -1.76 16 18 C 0.11 1.24 6.32 -3.45 -0.02 1.22 16 19 N -0.59 -9.35 2.91 -164.01 -0.48 -9.83 16 20 C 0.51 8.15 7.76 -10.98 -0.09 8.07 16 21 O -0.52 -10.29 13.26 5.56 0.07 -10.22 16 22 C 0.08 0.91 4.45 -5.20 -0.02 0.89 16 23 N -0.56 -6.36 2.04 -116.63 -0.24 -6.60 16 24 C 0.53 5.84 8.08 -11.09 -0.09 5.75 16 25 O -0.48 -7.03 17.47 5.60 0.10 -6.93 16 26 C -0.15 -0.88 7.03 -26.94 -0.19 -1.07 16 27 C -0.15 -0.85 7.03 -26.93 -0.19 -1.04 16 28 C 0.53 5.66 8.07 -11.09 -0.09 5.57 16 29 O -0.48 -6.72 17.48 5.61 0.10 -6.62 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 32 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.86 6.21 -51.92 -0.32 1.54 16 35 H 0.07 1.13 8.12 -51.93 -0.42 0.70 16 36 H 0.07 1.22 7.67 -51.93 -0.40 0.82 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.61 6.18 -51.93 -0.32 0.29 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.12 1.14 7.70 -51.93 -0.40 0.74 16 42 H 0.12 1.21 7.44 -51.93 -0.39 0.82 16 43 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -37.40 365.05 -8.47 -45.87 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.77 Total: -0.94 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: -1.77 Total: 15.42 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.68 Total: -59.35 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.27 Total: -23.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.40 -8.47 -45.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.852 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds