Wall clock time and date at job start Tue Mar 31 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48505 * 109.46901 * 239.99935 * 3 2 1 5 5 H 1.48501 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47351 * 119.99828 * 3 2 1 7 7 C 1.38815 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.48380 * 126.56286 * 359.97438 * 9 7 2 11 11 C 1.55470 * 106.97226 * 174.49734 * 10 9 7 12 12 C 1.53429 * 101.67678 * 337.40086 * 11 10 9 13 13 H 1.09006 * 111.14066 * 282.01588 * 12 11 10 14 14 C 1.45026 * 126.55792 * 179.97438 * 9 7 2 15 15 H 1.09002 * 108.70614 * 95.87074 * 14 9 7 16 16 C 1.51087 * 118.75975 * 330.92782 * 14 9 7 17 17 C 1.54988 * 106.76852 * 175.97459 * 16 14 9 18 18 C 1.52717 * 111.43101 * 57.27655 * 17 16 14 19 19 N 1.45714 * 116.37908 * 152.72950 * 12 11 10 20 20 C 1.34782 * 122.23074 * 9.90594 * 19 12 11 21 21 O 1.21281 * 119.99982 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99985 * 180.02562 * 20 19 12 23 23 N 1.46495 * 109.47000 * 180.02562 * 22 20 19 24 24 C 1.33879 * 122.76153 * 269.70676 * 23 22 20 25 25 O 1.21229 * 125.39328 * 359.97438 * 24 23 22 26 26 C 1.51312 * 109.20794 * 179.84511 * 24 23 22 27 27 C 1.54238 * 103.55346 * 0.38819 * 26 24 23 28 28 C 1.33875 * 122.76190 * 90.00112 * 23 22 20 29 29 O 1.21222 * 125.39985 * 359.97438 * 28 23 22 30 30 H 0.97000 * 119.99443 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.96316 * 55.11797 * 10 9 7 32 32 H 1.08995 * 109.99038 * 293.89073 * 10 9 7 33 33 H 1.09001 * 110.98842 * 219.29962 * 11 10 9 34 34 H 1.09009 * 110.98750 * 95.49815 * 11 10 9 35 35 H 1.08998 * 109.88249 * 295.85350 * 16 14 9 36 36 H 1.09005 * 109.87755 * 56.93257 * 16 14 9 37 37 H 1.08995 * 109.29777 * 296.65336 * 17 16 14 38 38 H 1.09004 * 108.87484 * 177.62092 * 17 16 14 39 39 H 1.09000 * 109.16008 * 190.82915 * 18 17 16 40 40 H 1.09002 * 109.15800 * 71.64867 * 18 17 16 41 41 H 1.09004 * 109.47049 * 300.00009 * 22 20 19 42 42 H 1.08997 * 109.47249 * 59.99829 * 22 20 19 43 43 H 1.09003 * 110.79669 * 241.78512 * 26 24 23 44 44 H 1.08998 * 110.41796 * 118.81275 * 26 24 23 45 45 H 1.08998 * 110.60289 * 241.26424 * 27 26 24 46 46 H 1.08997 * 110.60431 * 118.29938 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4303 -4.0799 -0.1421 12 6 0.8712 -4.5778 -0.7841 13 1 0.8951 -4.3519 -1.8502 14 6 1.9024 -3.7187 0.0005 15 1 1.9446 -4.0814 1.0276 16 6 3.2537 -3.9251 -0.6431 17 6 3.6451 -5.4044 -0.3964 18 6 2.5917 -6.3604 -0.9519 19 7 1.2343 -5.9640 -0.5201 20 6 0.3887 -6.8274 0.0767 21 8 -0.7167 -6.4590 0.4130 22 6 0.8169 -8.2507 0.3260 23 7 -0.2717 -8.9806 0.9804 24 6 -0.4014 -9.0479 2.3112 25 8 0.3425 -8.5301 3.1163 26 6 -1.6253 -9.8701 2.6511 27 6 -2.1807 -10.2789 1.2715 28 6 -1.2154 -9.6399 0.2971 29 8 -1.2857 -9.7131 -0.9109 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5852 -2.0180 -0.8399 32 1 -0.5661 -2.1880 0.9371 33 1 -1.2826 -4.2594 -0.7974 34 1 -0.5859 -4.5412 0.8333 35 1 3.1906 -3.7198 -1.7117 36 1 3.9889 -3.2663 -0.1809 37 1 3.7514 -5.5750 0.6749 38 1 4.5992 -5.6028 -0.8848 39 1 2.8002 -7.3690 -0.5951 40 1 2.6383 -6.3504 -2.0409 41 1 1.0559 -8.7298 -0.6235 42 1 1.6975 -8.2580 0.9683 43 1 -2.3549 -9.2710 3.1961 44 1 -1.3435 -10.7512 3.2276 45 1 -3.1864 -9.8831 1.1303 46 1 -2.1752 -11.3633 1.1618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049889047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:39 Heat of formation + Delta-G solvation = -76.414200 kcal Electronic energy + Delta-G solvation = -30499.448746 eV Core-core repulsion = 26389.681444 eV Total energy + Delta-G solvation = -4109.767302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.99627 -41.60502 -39.66256 -39.29083 -37.00819 -36.90618 -34.63496 -34.11804 -33.85182 -31.11938 -29.87197 -28.94748 -27.10819 -26.41768 -25.79311 -23.32978 -22.93293 -22.77177 -21.67085 -20.93485 -20.01685 -18.83061 -18.40534 -18.13772 -17.54147 -17.20293 -17.12766 -16.69848 -16.49151 -15.87506 -15.76194 -15.41764 -15.28288 -15.24821 -15.09547 -14.90765 -14.49849 -14.41847 -14.22304 -13.86943 -13.52442 -13.46532 -13.31753 -13.19319 -12.93434 -12.70290 -12.37787 -12.16187 -12.10385 -12.02908 -11.84872 -11.77830 -11.73062 -11.60674 -11.50955 -11.34367 -11.11852 -10.77903 -10.35134 -9.66207 -8.95790 -7.86938 -5.24659 0.50754 1.23258 1.42956 1.44178 1.48022 1.54101 1.71280 2.01042 2.48306 3.20562 3.21472 3.27251 3.31406 3.45221 3.64125 3.82608 3.90670 3.94927 3.99255 4.04526 4.05648 4.18710 4.20051 4.26778 4.30532 4.49850 4.51755 4.62264 4.71783 4.76478 4.84921 4.91397 4.92653 4.97401 5.02788 5.10893 5.24698 5.37688 5.44024 5.52189 5.55270 5.66298 5.75206 6.13872 6.29298 6.34924 6.70008 7.00864 7.01936 7.71716 8.41960 9.24833 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.003131 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.407589 B = 8941.690212 C = 9403.128253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.111 4.111 12 C 0.131 3.869 13 H 0.083 0.917 14 C 0.153 3.847 15 H -0.005 1.005 16 C -0.112 4.112 17 C -0.120 4.120 18 C 0.101 3.899 19 N -0.596 5.596 20 C 0.495 3.505 21 O -0.569 6.569 22 C 0.081 3.919 23 N -0.567 5.567 24 C 0.521 3.479 25 O -0.524 6.524 26 C -0.141 4.141 27 C -0.140 4.140 28 C 0.523 3.477 29 O -0.521 6.521 30 H 0.247 0.753 31 H 0.027 0.973 32 H -0.003 1.003 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.135 0.865 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -27.240 0.728 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.149 4.149 12 C 0.026 3.974 13 H 0.101 0.899 14 C 0.045 3.955 15 H 0.012 0.988 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.020 4.020 19 N -0.329 5.329 20 C 0.283 3.717 21 O -0.449 6.449 22 C -0.044 4.044 23 N -0.309 5.309 24 C 0.313 3.687 25 O -0.398 6.398 26 C -0.180 4.180 27 C -0.179 4.179 28 C 0.316 3.684 29 O -0.395 6.395 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.175 0.825 45 H 0.153 0.847 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.264 -26.608 0.697 26.714 hybrid contribution 0.076 2.011 0.049 2.014 sum 2.340 -24.597 0.746 24.719 Atomic orbital electron populations 1.70184 1.06591 1.25415 1.58240 1.25742 0.96566 1.01323 1.02605 0.85102 0.77065 0.78474 0.78384 1.19684 1.22298 1.20357 1.19398 0.91064 0.83103 1.42945 0.89213 1.44351 1.01939 1.00990 1.86416 1.21421 0.84126 0.90976 0.97644 1.22653 0.96373 0.95012 1.00910 1.22006 0.96120 0.80637 0.98643 0.89868 1.20955 0.94489 0.84917 0.95117 0.98780 1.21638 0.95257 0.97546 1.00606 1.22080 0.99598 0.92077 1.02112 1.22180 0.78551 0.99908 1.01344 1.48057 1.16279 1.09688 1.58865 1.21344 0.84704 0.88574 0.77062 1.90687 1.22826 1.78732 1.52637 1.21718 0.91258 0.88445 1.02942 1.46622 1.27529 1.46671 1.10059 1.21805 0.87416 0.79051 0.80467 1.90778 1.49031 1.47280 1.52706 1.22595 0.93675 1.02475 0.99223 1.22593 0.99472 1.05619 0.90166 1.21739 0.81432 0.76391 0.88888 1.90758 1.73424 1.60223 1.15082 0.94433 0.95466 0.98441 0.92036 0.91604 0.91395 0.92467 0.91964 0.86621 0.86381 0.88909 0.83592 0.84286 0.84846 0.82507 0.84707 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.20 10.46 21.65 0.23 -59.97 16 2 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.55 9.93 84.03 0.83 -12.72 16 8 H 0.09 4.80 7.27 -2.91 -0.02 4.78 16 9 N -0.61 -33.28 3.35 -670.55 -2.25 -35.53 16 10 C 0.18 10.19 5.47 86.87 0.48 10.66 16 11 C -0.11 -5.14 5.01 31.59 0.16 -4.99 16 12 C 0.13 5.16 3.32 46.13 0.15 5.31 16 13 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 14 C 0.15 6.62 2.57 45.49 0.12 6.73 16 15 H -0.01 -0.25 8.03 -2.39 -0.02 -0.27 16 16 C -0.11 -3.68 5.50 30.65 0.17 -3.51 16 17 C -0.12 -2.56 5.95 31.18 0.19 -2.37 16 18 C 0.10 1.92 6.32 86.03 0.54 2.47 16 19 N -0.60 -18.03 2.91 -791.20 -2.30 -20.34 16 20 C 0.50 15.64 7.76 87.66 0.68 16.32 16 21 O -0.57 -22.90 13.26 -3.03 -0.04 -22.94 16 22 C 0.08 1.73 4.45 85.63 0.38 2.11 16 23 N -0.57 -11.97 2.04 -760.74 -1.55 -13.52 16 24 C 0.52 10.67 8.08 87.99 0.71 11.38 16 25 O -0.52 -15.18 17.47 -2.87 -0.05 -15.23 16 26 C -0.14 -1.15 7.03 30.46 0.21 -0.93 16 27 C -0.14 -1.05 7.03 30.46 0.21 -0.83 16 28 C 0.52 10.11 8.07 87.99 0.71 10.82 16 29 O -0.52 -13.84 17.48 -2.85 -0.05 -13.89 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.03 1.64 7.19 -2.39 -0.02 1.62 16 32 H 0.00 -0.17 7.81 -2.39 -0.02 -0.19 16 33 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.07 3.25 6.21 -2.38 -0.01 3.24 16 35 H 0.07 2.20 8.12 -2.39 -0.02 2.19 16 36 H 0.06 1.99 7.67 -2.38 -0.02 1.97 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.12 1.32 6.18 -2.39 -0.01 1.31 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.15 2.31 7.70 -2.38 -0.02 2.29 16 42 H 0.14 2.42 7.44 -2.39 -0.02 2.40 16 43 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -89.94 365.05 3.02 -86.92 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.00 Total: 8.82 kcal Atomic # 6 Polarization: 30.82 SS G_CDS: 6.01 Total: 36.83 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.88 Total: -129.35 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.14 Total: -52.06 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -89.94 3.02 -86.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.509 kcal (2) G-P(sol) polarization free energy of solvation -89.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds