Wall clock time and date at job start Tue Mar 31 2020 18:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48494 * 109.47386 * 270.00177 * 3 2 1 5 5 H 1.48505 * 109.47067 * 30.00333 * 3 2 1 6 6 H 1.48505 * 109.46956 * 149.99722 * 3 2 1 7 7 C 1.38809 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00228 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.48375 * 126.56332 * 359.97438 * 9 7 2 11 11 C 1.55473 * 106.97513 * 185.54224 * 10 9 7 12 12 C 1.53429 * 101.67427 * 22.60330 * 11 10 9 13 13 H 1.09000 * 111.15070 * 77.97690 * 12 11 10 14 14 C 1.45030 * 126.56037 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70782 * 263.47922 * 14 9 7 16 16 C 1.51086 * 119.19493 * 28.75974 * 14 9 7 17 17 C 1.53867 * 107.34224 * 183.88542 * 16 14 9 18 18 C 1.52717 * 111.52283 * 303.06695 * 17 16 14 19 19 N 1.45717 * 116.37815 * 207.27136 * 12 11 10 20 20 C 1.34777 * 122.22410 * 350.07145 * 19 12 11 21 21 O 1.21284 * 120.00380 * 0.02562 * 20 19 12 22 22 C 1.50703 * 120.00375 * 180.02562 * 20 19 12 23 23 N 1.46496 * 109.47376 * 180.02562 * 22 20 19 24 24 C 1.33870 * 122.76128 * 269.70564 * 23 22 20 25 25 O 1.21228 * 125.39944 * 359.97438 * 24 23 22 26 26 C 1.51318 * 109.20731 * 179.84451 * 24 23 22 27 27 C 1.54233 * 103.55358 * 0.38666 * 26 24 23 28 28 C 1.33879 * 122.76404 * 89.99914 * 23 22 20 29 29 O 1.21229 * 125.39344 * 0.02562 * 28 23 22 30 30 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.96446 * 304.92583 * 10 9 7 32 32 H 1.09000 * 109.96271 * 66.13036 * 10 9 7 33 33 H 1.09006 * 110.98814 * 140.69669 * 11 10 9 34 34 H 1.08997 * 110.99081 * 264.50306 * 11 10 9 35 35 H 1.08998 * 109.88382 * 303.34558 * 16 14 9 36 36 H 1.09006 * 109.88108 * 64.42481 * 16 14 9 37 37 H 1.08998 * 109.07094 * 63.59937 * 17 16 14 38 38 H 1.09007 * 109.06839 * 182.54437 * 17 16 14 39 39 H 1.09006 * 109.16428 * 288.13106 * 18 17 16 40 40 H 1.08999 * 109.16000 * 168.94531 * 18 17 16 41 41 H 1.09011 * 109.46462 * 300.00533 * 22 20 19 42 42 H 1.08997 * 109.47093 * 59.99635 * 22 20 19 43 43 H 1.09005 * 110.79844 * 241.78290 * 26 24 23 44 44 H 1.09000 * 110.41771 * 118.81705 * 26 24 23 45 45 H 1.08996 * 110.60764 * 241.26101 * 27 26 24 46 46 H 1.08998 * 110.60123 * 118.29717 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4301 -4.0799 0.1437 12 6 0.8718 -4.5775 0.7850 13 1 0.8966 -4.3514 1.8510 14 6 1.9025 -3.7186 -0.0016 15 1 1.9332 -4.0855 -1.0275 16 6 3.2569 -3.9351 0.6319 17 6 3.6457 -5.4045 0.3924 18 6 2.5932 -6.3604 0.9497 19 7 1.2349 -5.9639 0.5212 20 6 0.3888 -6.8275 -0.0744 21 8 -0.7168 -6.4590 -0.4106 22 6 0.8162 -8.2511 -0.3228 23 7 -0.2725 -8.9808 -0.9772 24 6 -1.2135 -9.6440 -0.2939 25 8 -1.2805 -9.7219 0.9140 26 6 -2.1821 -10.2783 -1.2682 27 6 -1.6260 -9.8706 -2.6478 28 6 -0.4050 -9.0442 -2.3079 29 8 0.3361 -8.5224 -3.1130 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5846 -2.0178 0.8410 32 1 -0.5663 -2.1879 -0.9359 33 1 -1.2819 -4.2593 0.7998 34 1 -0.5863 -4.5414 -0.8313 35 1 3.9922 -3.2770 0.1689 36 1 3.2017 -3.7359 1.7021 37 1 3.7502 -5.5751 -0.6791 38 1 4.6008 -5.6039 0.8783 39 1 2.6415 -6.3505 2.0386 40 1 2.8011 -7.3691 0.5925 41 1 1.6966 -8.2591 -0.9656 42 1 1.0555 -8.7295 0.6269 43 1 -3.1877 -9.8820 -1.1276 44 1 -2.1771 -11.3627 -1.1577 45 1 -2.3550 -9.2716 -3.1935 46 1 -1.3445 -10.7523 -3.2236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049889048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:43 Heat of formation + Delta-G solvation = -49.962475 kcal Electronic energy + Delta-G solvation = -30500.533580 eV Core-core repulsion = 26391.913311 eV Total energy + Delta-G solvation = -4108.620270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17004 -40.24235 -38.76339 -37.80017 -36.01143 -35.48396 -33.73243 -32.65854 -32.17401 -29.38194 -28.37360 -27.77134 -26.45817 -24.54111 -24.33365 -22.64202 -21.54312 -21.30241 -20.04263 -19.59342 -18.92132 -17.65568 -17.32702 -16.74057 -16.66758 -16.05237 -15.64674 -15.30728 -14.88262 -14.67758 -14.42196 -14.34667 -14.19984 -14.15372 -13.92420 -13.60536 -13.48709 -13.09598 -13.05989 -12.46830 -12.37624 -12.18446 -11.86618 -11.70900 -11.57702 -11.16205 -10.91425 -10.86304 -10.72254 -10.68597 -10.50332 -10.28476 -10.19277 -10.09211 -9.99994 -9.84935 -9.60710 -9.01247 -8.57547 -8.28672 -6.81738 -5.68540 -3.02991 1.30237 2.07567 2.48807 2.65638 3.14222 3.41463 3.45949 3.48133 3.77578 3.91180 4.11025 4.34417 4.50289 4.53379 4.74050 4.77429 4.91569 5.04248 5.08912 5.09872 5.22633 5.26057 5.28691 5.35295 5.42992 5.57291 5.62779 5.75367 5.85947 5.98336 6.06950 6.23240 6.28508 6.38130 6.53181 6.54431 6.71305 6.75687 6.89229 7.07172 7.16827 7.48797 7.57656 7.61538 7.68261 7.85030 8.25144 8.27905 9.20612 9.84557 10.52832 11.43515 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.003131 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.085159 B = 8940.526771 C = 9402.854914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.109 3.891 19 N -0.594 5.594 20 C 0.506 3.494 21 O -0.524 6.524 22 C 0.078 3.922 23 N -0.558 5.558 24 C 0.532 3.468 25 O -0.481 6.481 26 C -0.154 4.154 27 C -0.154 4.154 28 C 0.530 3.470 29 O -0.477 6.477 30 H 0.252 0.748 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 -24.069 -1.102 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.328 5.328 20 C 0.292 3.708 21 O -0.400 6.400 22 C -0.047 4.047 23 N -0.301 5.301 24 C 0.321 3.679 25 O -0.353 6.353 26 C -0.193 4.193 27 C -0.193 4.193 28 C 0.319 3.681 29 O -0.348 6.348 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.488 -23.376 -1.068 23.405 hybrid contribution 0.622 1.041 0.095 1.216 sum 1.110 -22.335 -0.972 22.384 Atomic orbital electron populations 1.69943 1.04900 1.25064 1.56766 1.24807 0.95671 0.97639 1.02245 0.86143 0.78554 0.83637 0.77550 1.21640 1.21700 1.20710 1.18987 0.90333 0.82196 1.43984 0.90334 1.44076 1.01782 0.99313 1.86502 1.21738 0.83645 0.88693 1.01103 1.22956 0.94549 0.97964 1.01285 1.22459 0.98933 0.78132 0.99379 0.90030 1.20764 0.91377 0.87198 0.95688 0.96545 1.21423 0.98527 0.94111 1.01324 1.21905 0.97566 0.95739 1.01664 1.21764 0.81562 0.98170 0.99892 1.47942 1.14243 1.11553 1.59056 1.20457 0.85307 0.86858 0.78220 1.90719 1.20783 1.77577 1.50899 1.21657 0.90411 0.91518 1.01091 1.46324 1.27415 1.46828 1.09533 1.20816 0.81299 0.77063 0.88732 1.90782 1.72560 1.58682 1.13236 1.22451 1.00638 1.03827 0.92421 1.22450 0.96337 1.01969 0.98593 1.20830 0.86565 0.79614 0.81076 1.90805 1.47110 1.45059 1.51788 0.93720 0.92529 0.94273 0.92160 0.90161 0.91348 0.91689 0.91682 0.90699 0.91064 0.90620 0.86146 0.86162 0.85893 0.86176 0.85893 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.46 55.49 0.58 -26.95 16 2 C -0.01 -0.20 5.49 -17.44 -0.10 -0.30 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.32 9.94 -15.06 -0.15 -6.47 16 8 H 0.08 2.09 7.31 -52.49 -0.38 1.71 16 9 N -0.59 -15.40 3.35 -163.27 -0.55 -15.95 16 10 C 0.17 4.46 5.47 -1.69 -0.01 4.45 16 11 C -0.13 -2.83 5.01 -25.20 -0.13 -2.95 16 12 C 0.12 2.23 3.33 -66.79 -0.22 2.01 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 14 C 0.16 3.36 2.58 -68.34 -0.18 3.19 16 15 H 0.02 0.39 8.04 -51.93 -0.42 -0.02 16 16 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 17 C -0.13 -1.60 5.92 -26.43 -0.16 -1.76 16 18 C 0.11 1.24 6.32 -3.45 -0.02 1.22 16 19 N -0.59 -9.35 2.91 -163.98 -0.48 -9.83 16 20 C 0.51 8.15 7.76 -10.98 -0.09 8.07 16 21 O -0.52 -10.29 13.26 5.55 0.07 -10.22 16 22 C 0.08 0.91 4.45 -5.19 -0.02 0.89 16 23 N -0.56 -6.36 2.04 -116.63 -0.24 -6.60 16 24 C 0.53 5.66 8.08 -11.09 -0.09 5.57 16 25 O -0.48 -6.71 17.47 5.60 0.10 -6.61 16 26 C -0.15 -0.85 7.03 -26.94 -0.19 -1.04 16 27 C -0.15 -0.88 7.03 -26.94 -0.19 -1.07 16 28 C 0.53 5.85 8.08 -11.09 -0.09 5.76 16 29 O -0.48 -7.03 17.48 5.60 0.10 -6.93 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 32 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 35 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 36 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.62 6.18 -51.93 -0.32 0.29 16 41 H 0.12 1.21 7.44 -51.92 -0.39 0.82 16 42 H 0.12 1.14 7.70 -51.93 -0.40 0.74 16 43 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -37.42 365.06 -8.48 -45.90 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.77 Total: -1.01 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: -1.77 Total: 15.45 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.68 Total: -59.33 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.27 Total: -23.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.42 -8.48 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.065 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds