Wall clock time and date at job start Tue Mar 31 2020 18:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48494 * 109.47386 * 270.00177 * 3 2 1 5 5 H 1.48505 * 109.47067 * 30.00333 * 3 2 1 6 6 H 1.48505 * 109.46956 * 149.99722 * 3 2 1 7 7 C 1.38809 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00228 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.48375 * 126.56332 * 359.97438 * 9 7 2 11 11 C 1.55473 * 106.97513 * 185.54224 * 10 9 7 12 12 C 1.53429 * 101.67427 * 22.60330 * 11 10 9 13 13 H 1.09000 * 111.15070 * 77.97690 * 12 11 10 14 14 C 1.45030 * 126.56037 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70782 * 263.47922 * 14 9 7 16 16 C 1.51086 * 119.19493 * 28.75974 * 14 9 7 17 17 C 1.53867 * 107.34224 * 183.88542 * 16 14 9 18 18 C 1.52717 * 111.52283 * 303.06695 * 17 16 14 19 19 N 1.45717 * 116.37815 * 207.27136 * 12 11 10 20 20 C 1.34777 * 122.22410 * 350.07145 * 19 12 11 21 21 O 1.21284 * 120.00380 * 0.02562 * 20 19 12 22 22 C 1.50703 * 120.00375 * 180.02562 * 20 19 12 23 23 N 1.46496 * 109.47376 * 180.02562 * 22 20 19 24 24 C 1.33870 * 122.76128 * 269.70564 * 23 22 20 25 25 O 1.21228 * 125.39944 * 359.97438 * 24 23 22 26 26 C 1.51318 * 109.20731 * 179.84451 * 24 23 22 27 27 C 1.54233 * 103.55358 * 0.38666 * 26 24 23 28 28 C 1.33879 * 122.76404 * 89.99914 * 23 22 20 29 29 O 1.21229 * 125.39344 * 0.02562 * 28 23 22 30 30 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.96446 * 304.92583 * 10 9 7 32 32 H 1.09000 * 109.96271 * 66.13036 * 10 9 7 33 33 H 1.09006 * 110.98814 * 140.69669 * 11 10 9 34 34 H 1.08997 * 110.99081 * 264.50306 * 11 10 9 35 35 H 1.08998 * 109.88382 * 303.34558 * 16 14 9 36 36 H 1.09006 * 109.88108 * 64.42481 * 16 14 9 37 37 H 1.08998 * 109.07094 * 63.59937 * 17 16 14 38 38 H 1.09007 * 109.06839 * 182.54437 * 17 16 14 39 39 H 1.09006 * 109.16428 * 288.13106 * 18 17 16 40 40 H 1.08999 * 109.16000 * 168.94531 * 18 17 16 41 41 H 1.09011 * 109.46462 * 300.00533 * 22 20 19 42 42 H 1.08997 * 109.47093 * 59.99635 * 22 20 19 43 43 H 1.09005 * 110.79844 * 241.78290 * 26 24 23 44 44 H 1.09000 * 110.41771 * 118.81705 * 26 24 23 45 45 H 1.08996 * 110.60764 * 241.26101 * 27 26 24 46 46 H 1.08998 * 110.60123 * 118.29717 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1485 -2.5576 0.0005 11 6 -0.4301 -4.0799 0.1437 12 6 0.8718 -4.5775 0.7850 13 1 0.8966 -4.3514 1.8510 14 6 1.9025 -3.7186 -0.0016 15 1 1.9332 -4.0855 -1.0275 16 6 3.2569 -3.9351 0.6319 17 6 3.6457 -5.4045 0.3924 18 6 2.5932 -6.3604 0.9497 19 7 1.2349 -5.9639 0.5212 20 6 0.3888 -6.8275 -0.0744 21 8 -0.7168 -6.4590 -0.4106 22 6 0.8162 -8.2511 -0.3228 23 7 -0.2725 -8.9808 -0.9772 24 6 -1.2135 -9.6440 -0.2939 25 8 -1.2805 -9.7219 0.9140 26 6 -2.1821 -10.2783 -1.2682 27 6 -1.6260 -9.8706 -2.6478 28 6 -0.4050 -9.0442 -2.3079 29 8 0.3361 -8.5224 -3.1130 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5846 -2.0178 0.8410 32 1 -0.5663 -2.1879 -0.9359 33 1 -1.2819 -4.2593 0.7998 34 1 -0.5863 -4.5414 -0.8313 35 1 3.9922 -3.2770 0.1689 36 1 3.2017 -3.7359 1.7021 37 1 3.7502 -5.5751 -0.6791 38 1 4.6008 -5.6039 0.8783 39 1 2.6415 -6.3505 2.0386 40 1 2.8011 -7.3691 0.5925 41 1 1.6966 -8.2591 -0.9656 42 1 1.0555 -8.7295 0.6269 43 1 -3.1877 -9.8820 -1.1276 44 1 -2.1771 -11.3627 -1.1577 45 1 -2.3550 -9.2716 -3.1935 46 1 -1.3445 -10.7523 -3.2236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049889048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:42 Heat of formation + Delta-G solvation = -76.675318 kcal Electronic energy + Delta-G solvation = -30501.691936 eV Core-core repulsion = 26391.913311 eV Total energy + Delta-G solvation = -4109.778625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.99730 -41.61628 -39.66209 -39.29554 -37.02714 -36.90786 -34.63752 -34.14210 -33.87849 -31.12731 -29.86986 -28.94819 -27.10842 -26.42710 -25.81096 -23.33016 -22.92784 -22.77956 -21.66806 -20.93306 -20.01572 -18.83265 -18.40647 -18.14125 -17.54205 -17.20879 -17.12958 -16.70026 -16.49020 -15.88106 -15.76161 -15.43806 -15.28297 -15.24687 -15.10245 -14.90683 -14.50007 -14.41464 -14.22551 -13.88140 -13.52520 -13.47072 -13.31699 -13.19805 -12.93073 -12.75372 -12.36627 -12.13727 -12.10388 -12.02778 -11.83318 -11.77769 -11.73112 -11.61843 -11.50445 -11.34473 -11.11892 -10.79231 -10.35144 -9.66042 -8.95980 -7.87203 -5.24928 0.50708 1.23252 1.42964 1.44161 1.46809 1.55152 1.71210 2.01028 2.48032 3.20240 3.21429 3.27196 3.31316 3.45334 3.64118 3.82251 3.90683 3.95590 3.99130 4.03800 4.05489 4.18816 4.20015 4.26810 4.29831 4.49706 4.51888 4.62849 4.72795 4.76457 4.85410 4.91359 4.92635 4.97076 5.03098 5.11346 5.24557 5.37598 5.44220 5.52105 5.54927 5.66214 5.75174 6.13652 6.29261 6.34842 6.69971 7.00787 7.01834 7.71439 8.41653 9.24785 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.003131 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.085159 B = 8940.526771 C = 9402.854914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.235 4.235 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.111 4.111 12 C 0.130 3.870 13 H 0.083 0.917 14 C 0.154 3.846 15 H -0.006 1.006 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.101 3.899 19 N -0.596 5.596 20 C 0.495 3.505 21 O -0.570 6.570 22 C 0.081 3.919 23 N -0.567 5.567 24 C 0.523 3.477 25 O -0.521 6.521 26 C -0.140 4.140 27 C -0.141 4.141 28 C 0.521 3.479 29 O -0.524 6.524 30 H 0.246 0.754 31 H 0.027 0.973 32 H -0.002 1.002 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.158 0.842 45 H 0.133 0.867 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -27.272 -0.700 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.149 4.149 12 C 0.025 3.975 13 H 0.101 0.899 14 C 0.046 3.954 15 H 0.011 0.989 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.020 4.020 19 N -0.329 5.329 20 C 0.283 3.717 21 O -0.449 6.449 22 C -0.044 4.044 23 N -0.309 5.309 24 C 0.315 3.685 25 O -0.395 6.395 26 C -0.179 4.179 27 C -0.180 4.180 28 C 0.313 3.687 29 O -0.398 6.398 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.176 0.824 45 H 0.151 0.849 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.322 -26.645 -0.658 26.754 hybrid contribution 0.054 2.018 -0.065 2.019 sum 2.376 -24.628 -0.723 24.753 Atomic orbital electron populations 1.70180 1.06602 1.25352 1.58318 1.25737 0.96567 1.01322 1.02640 0.85032 0.77816 0.78837 0.77370 1.21573 1.22189 1.18661 1.19435 0.91075 0.83077 1.42780 0.89178 1.44345 1.01944 1.00976 1.86376 1.21422 0.84090 0.90986 0.97661 1.22651 0.96373 0.95005 1.00912 1.22028 0.96165 0.80650 0.98658 0.89879 1.20936 0.94478 0.84898 0.95108 0.98878 1.21413 0.95225 0.97641 1.00704 1.21890 0.99658 0.92166 1.02158 1.22182 0.78520 0.99915 1.01367 1.48054 1.16201 1.09689 1.58941 1.21346 0.84711 0.88588 0.77052 1.90688 1.22842 1.78756 1.52607 1.21719 0.91251 0.88440 1.02953 1.46620 1.27634 1.46558 1.10063 1.21739 0.81471 0.76357 0.88884 1.90759 1.73460 1.60197 1.15074 1.22593 0.99433 1.05660 0.90171 1.22593 0.93727 1.02421 0.99221 1.21805 0.87338 0.79130 0.80468 1.90778 1.49099 1.47211 1.52710 0.94434 0.95449 0.98421 0.92036 0.91605 0.92428 0.91461 0.92024 0.86551 0.88907 0.86376 0.84296 0.83577 0.84668 0.82408 0.84884 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.20 10.46 21.65 0.23 -59.97 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.24 -13.45 9.94 84.03 0.84 -12.62 16 8 H 0.09 4.82 7.31 -2.91 -0.02 4.80 16 9 N -0.61 -33.24 3.35 -670.46 -2.25 -35.49 16 10 C 0.18 10.19 5.47 86.87 0.48 10.66 16 11 C -0.11 -5.14 5.01 31.59 0.16 -4.98 16 12 C 0.13 5.12 3.33 46.15 0.15 5.28 16 13 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.15 6.64 2.58 45.51 0.12 6.76 16 15 H -0.01 -0.29 8.04 -2.39 -0.02 -0.31 16 16 C -0.11 -3.65 5.45 30.26 0.16 -3.48 16 17 C -0.12 -2.56 5.92 30.79 0.18 -2.37 16 18 C 0.10 1.92 6.32 86.03 0.54 2.46 16 19 N -0.60 -18.03 2.91 -791.10 -2.30 -20.34 16 20 C 0.50 15.64 7.76 87.66 0.68 16.32 16 21 O -0.57 -22.91 13.26 -3.04 -0.04 -22.95 16 22 C 0.08 1.73 4.45 85.63 0.38 2.11 16 23 N -0.57 -11.97 2.04 -760.72 -1.55 -13.52 16 24 C 0.52 10.10 8.08 87.99 0.71 10.81 16 25 O -0.52 -13.82 17.47 -2.87 -0.05 -13.87 16 26 C -0.14 -1.05 7.03 30.46 0.21 -0.83 16 27 C -0.14 -1.15 7.03 30.46 0.21 -0.93 16 28 C 0.52 10.69 8.08 87.99 0.71 11.40 16 29 O -0.52 -15.21 17.48 -2.87 -0.05 -15.26 16 30 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.03 1.65 7.19 -2.39 -0.02 1.63 16 32 H 0.00 -0.15 7.81 -2.39 -0.02 -0.17 16 33 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 34 H 0.07 3.25 6.21 -2.39 -0.01 3.24 16 35 H 0.06 1.99 7.70 -2.39 -0.02 1.98 16 36 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 40 H 0.12 1.32 6.18 -2.39 -0.01 1.31 16 41 H 0.14 2.42 7.44 -2.38 -0.02 2.40 16 42 H 0.15 2.31 7.70 -2.39 -0.02 2.29 16 43 H 0.14 0.79 8.14 -2.38 -0.02 0.78 16 44 H 0.16 0.06 8.14 -2.39 -0.02 0.05 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -90.00 365.06 3.01 -86.98 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.00 Total: 8.64 kcal Atomic # 6 Polarization: 30.92 SS G_CDS: 6.01 Total: 36.93 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -5.88 Total: -129.32 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.14 Total: -52.08 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -90.00 3.01 -86.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.305 kcal (2) G-P(sol) polarization free energy of solvation -89.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds