Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47231 * 274.99299 * 3 2 1 5 5 H 1.48501 * 109.47076 * 34.99212 * 3 2 1 6 6 H 1.48500 * 109.47030 * 154.98972 * 3 2 1 7 7 C 1.38813 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 187.31134 * 7 2 1 9 9 N 1.36940 * 119.99786 * 7.29983 * 7 2 1 10 10 C 1.47122 * 125.76980 * 355.57688 * 9 7 2 11 11 C 1.54563 * 107.25472 * 177.36109 * 10 9 7 12 12 C 1.54428 * 102.44744 * 338.32809 * 11 10 9 13 13 H 1.08998 * 110.71871 * 279.43425 * 12 11 10 14 14 C 1.48216 * 125.76587 * 175.52302 * 9 7 2 15 15 H 1.08996 * 111.52967 * 326.18605 * 14 9 7 16 16 C 1.53012 * 107.10883 * 89.18469 * 14 9 7 17 17 C 1.52735 * 110.79834 * 168.07515 * 16 14 9 18 18 C 1.53890 * 108.36068 * 296.11231 * 17 16 14 19 19 N 1.45124 * 111.60274 * 156.57884 * 12 11 10 20 20 C 1.34781 * 119.57481 * 111.32843 * 19 12 11 21 21 O 1.21279 * 120.00101 * 359.97438 * 20 19 12 22 22 C 1.50696 * 120.00012 * 180.02562 * 20 19 12 23 23 N 1.46503 * 109.47070 * 179.97438 * 22 20 19 24 24 C 1.34223 * 122.70494 * 269.88974 * 23 22 20 25 25 O 1.21220 * 125.59092 * 0.02623 * 24 23 22 26 26 C 1.51314 * 109.01326 * 179.97438 * 24 23 22 27 27 C 1.54226 * 103.69678 * 0.13233 * 26 24 23 28 28 C 1.33878 * 122.76449 * 89.99700 * 23 22 20 29 29 O 1.21222 * 125.39723 * 0.02562 * 28 23 22 30 30 H 0.97002 * 119.99693 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.87991 * 296.76903 * 10 9 7 32 32 H 1.09002 * 109.88678 * 57.78846 * 10 9 7 33 33 H 1.09000 * 110.81159 * 220.08993 * 11 10 9 34 34 H 1.08999 * 110.81542 * 96.56439 * 11 10 9 35 35 H 1.08996 * 109.21878 * 288.41518 * 16 14 9 36 36 H 1.08999 * 109.21469 * 47.78418 * 16 14 9 37 37 H 1.08999 * 109.64569 * 55.91261 * 17 16 14 38 38 H 1.09002 * 109.64534 * 176.33444 * 17 16 14 39 39 H 1.09004 * 109.98573 * 298.82308 * 18 17 16 40 40 H 1.08995 * 109.90253 * 177.72297 * 18 17 16 41 41 H 1.08992 * 109.47404 * 59.99023 * 22 20 19 42 42 H 1.09004 * 109.46734 * 299.99414 * 22 20 19 43 43 H 1.09007 * 110.60671 * 241.54106 * 26 24 23 44 44 H 1.08996 * 110.60903 * 118.72843 * 26 24 23 45 45 H 1.09000 * 110.60336 * 118.43864 * 27 26 24 46 46 H 1.08997 * 110.61058 * 241.25484 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0837 -1.2060 0.1185 9 7 1.3338 -2.3832 -0.1518 10 6 -0.1276 -2.5332 -0.2307 11 6 -0.4225 -4.0320 -0.4665 12 6 0.9098 -4.5448 -1.0553 13 1 0.9784 -4.3087 -2.1172 14 6 1.9504 -3.7263 -0.2646 15 1 2.9059 -3.6852 -0.7874 16 6 2.0946 -4.2762 1.1559 17 6 2.4450 -5.7626 1.1291 18 6 1.2711 -6.5260 0.4908 19 7 1.0683 -5.9733 -0.8539 20 6 1.0233 -6.8036 -1.9146 21 8 0.8508 -6.3558 -3.0284 22 6 1.1861 -8.2886 -1.7164 23 7 1.0989 -8.9666 -3.0122 24 6 -0.0610 -9.4093 -3.5224 25 8 -1.1479 -9.3081 -2.9953 26 6 0.2055 -10.0552 -4.8646 27 6 1.7307 -9.9119 -5.0424 28 6 2.1691 -9.1972 -3.7828 29 8 3.3088 -8.8841 -3.5135 30 1 -0.4850 0.8401 0.0004 31 1 -0.5846 -2.2080 0.7039 32 1 -0.5168 -1.9415 -1.0593 33 1 -1.2359 -4.1589 -1.1810 34 1 -0.6494 -4.5347 0.4736 35 1 2.8838 -3.7310 1.6734 36 1 1.1546 -4.1397 1.6906 37 1 3.3486 -5.9155 0.5391 38 1 2.6069 -6.1194 2.1463 39 1 0.3690 -6.3884 1.0871 40 1 1.5118 -7.5868 0.4222 41 1 0.3972 -8.6563 -1.0604 42 1 2.1575 -8.4905 -1.2650 43 1 -0.3245 -9.5263 -5.6568 44 1 -0.0817 -11.1065 -4.8482 45 1 2.2026 -10.8920 -5.1117 46 1 1.9596 -9.3140 -5.9246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049889049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = -57.084422 kcal Electronic energy + Delta-G solvation = -30291.770841 eV Core-core repulsion = 26182.841740 eV Total energy + Delta-G solvation = -4108.929100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18028 -40.27032 -38.79846 -38.01109 -36.05155 -35.33433 -33.76457 -32.44585 -32.23354 -29.39449 -28.58115 -27.70547 -26.49628 -24.58970 -24.30581 -22.66465 -22.07899 -21.14644 -20.06331 -19.43377 -18.30753 -17.86571 -17.40950 -16.89412 -16.74917 -16.71360 -15.54870 -15.20969 -14.94785 -14.76699 -14.45827 -14.28190 -14.22096 -14.19578 -13.89337 -13.55845 -13.44682 -13.11170 -13.01944 -12.67616 -12.34319 -12.09877 -11.93626 -11.73830 -11.37664 -11.06956 -11.01314 -10.94300 -10.83386 -10.66199 -10.58089 -10.52862 -10.31941 -10.08426 -10.06803 -9.67236 -9.62672 -9.44694 -8.59698 -8.35134 -6.86718 -5.72794 -3.05562 1.26794 2.04086 2.44636 2.57862 3.13207 3.40901 3.46260 3.47831 3.74329 3.87622 4.07696 4.32163 4.48341 4.50086 4.72459 4.80064 4.90443 5.05653 5.06262 5.09860 5.22446 5.23516 5.25487 5.35219 5.45666 5.55102 5.61087 5.66158 5.84378 5.96224 6.08045 6.18006 6.28746 6.33939 6.49408 6.49868 6.55830 6.69916 6.92402 7.03324 7.04097 7.43193 7.51845 7.54111 7.62019 7.81759 8.17117 8.23848 9.19683 9.79674 10.45821 11.38910 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002917 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.251722 B = 9597.614018 C = 9689.552527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.130 3.870 13 H 0.101 0.899 14 C 0.156 3.844 15 H 0.060 0.940 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.587 5.587 20 C 0.499 3.501 21 O -0.535 6.535 22 C 0.079 3.921 23 N -0.560 5.560 24 C 0.532 3.468 25 O -0.478 6.478 26 C -0.154 4.154 27 C -0.154 4.154 28 C 0.531 3.469 29 O -0.479 6.479 30 H 0.252 0.748 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -24.409 -4.589 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.119 0.881 14 C 0.047 3.953 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.019 4.019 19 N -0.319 5.319 20 C 0.285 3.715 21 O -0.411 6.411 22 C -0.046 4.046 23 N -0.303 5.303 24 C 0.321 3.679 25 O -0.349 6.349 26 C -0.194 4.194 27 C -0.193 4.193 28 C 0.320 3.680 29 O -0.350 6.350 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.458 -23.646 -4.706 24.154 hybrid contribution 0.385 1.062 0.263 1.160 sum 1.843 -22.584 -4.444 23.091 Atomic orbital electron populations 1.69974 1.04911 1.25089 1.56597 1.24815 0.95684 0.97626 1.02105 0.86127 0.78663 0.83626 0.77519 1.21612 1.21807 1.20647 1.19035 0.91164 0.82372 1.43034 0.90392 1.44719 1.01546 1.00344 1.85668 1.21185 0.84420 0.88026 1.00885 1.23108 0.96154 0.99979 0.99741 1.21834 0.96760 0.77086 1.01679 0.88089 1.21357 0.94781 0.86331 0.92795 0.92163 1.22106 1.02058 0.92825 0.99940 1.22004 0.97428 0.97378 1.00376 1.21997 0.99478 0.97189 0.83265 1.47599 1.70446 1.07381 1.06486 1.20616 0.77321 0.88407 0.85143 1.90705 1.49103 1.77458 1.23866 1.21662 1.06491 0.91265 0.85141 1.46437 1.10956 1.52447 1.20468 1.20898 0.82818 0.76675 0.87519 1.90790 1.24284 1.54421 1.65380 1.22449 0.96704 1.04402 0.95844 1.22443 0.95614 1.03776 0.97504 1.20806 0.84037 0.77563 0.85566 1.90793 1.19178 1.50069 1.74955 0.93725 0.94059 0.93001 0.92049 0.92183 0.92029 0.91749 0.91644 0.91110 0.90687 0.90394 0.86001 0.85927 0.85934 0.86102 0.86104 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.38 55.49 0.58 -26.45 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.06 2.91 -162.19 -0.47 -15.53 16 10 C 0.18 4.39 5.20 -2.88 -0.01 4.38 16 11 C -0.15 -2.95 6.08 -25.16 -0.15 -3.11 16 12 C 0.13 2.50 3.10 -67.29 -0.21 2.29 16 13 H 0.10 2.22 6.96 -51.93 -0.36 1.86 16 14 C 0.16 3.20 3.60 -66.35 -0.24 2.96 16 15 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.13 -2.22 5.10 -26.86 -0.14 -2.36 16 17 C -0.13 -1.67 6.12 -26.40 -0.16 -1.83 16 18 C 0.10 1.20 6.07 -3.42 -0.02 1.18 16 19 N -0.59 -9.07 2.73 -164.76 -0.45 -9.52 16 20 C 0.50 7.89 7.73 -10.99 -0.08 7.81 16 21 O -0.53 -10.53 15.76 5.56 0.09 -10.45 16 22 C 0.08 0.90 4.35 -5.19 -0.02 0.87 16 23 N -0.56 -6.20 2.05 -116.54 -0.24 -6.44 16 24 C 0.53 5.56 8.09 -10.93 -0.09 5.47 16 25 O -0.48 -6.64 17.50 5.61 0.10 -6.54 16 26 C -0.15 -0.81 7.02 -26.94 -0.19 -1.00 16 27 C -0.15 -0.81 7.03 -26.94 -0.19 -1.00 16 28 C 0.53 5.59 8.08 -11.08 -0.09 5.50 16 29 O -0.48 -6.71 17.48 5.61 0.10 -6.61 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.10 7.66 -51.93 -0.40 0.70 16 32 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.07 6.78 -51.93 -0.35 0.72 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.08 0.64 5.81 -51.93 -0.30 0.33 16 41 H 0.12 1.14 7.61 -51.93 -0.40 0.74 16 42 H 0.12 1.15 7.31 -51.93 -0.38 0.77 16 43 H 0.12 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -36.74 366.44 -8.33 -45.07 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.68 Total: -0.71 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -1.85 Total: 14.45 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.58 Total: -57.94 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.28 Total: -23.60 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.74 -8.33 -45.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.019 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds