Wall clock time and date at job start Tue Mar 31 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47231 * 274.99299 * 3 2 1 5 5 H 1.48501 * 109.47076 * 34.99212 * 3 2 1 6 6 H 1.48500 * 109.47030 * 154.98972 * 3 2 1 7 7 C 1.38813 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 187.31134 * 7 2 1 9 9 N 1.36940 * 119.99786 * 7.29983 * 7 2 1 10 10 C 1.47122 * 125.76980 * 355.57688 * 9 7 2 11 11 C 1.54563 * 107.25472 * 177.36109 * 10 9 7 12 12 C 1.54428 * 102.44744 * 338.32809 * 11 10 9 13 13 H 1.08998 * 110.71871 * 279.43425 * 12 11 10 14 14 C 1.48216 * 125.76587 * 175.52302 * 9 7 2 15 15 H 1.08996 * 111.52967 * 326.18605 * 14 9 7 16 16 C 1.53012 * 107.10883 * 89.18469 * 14 9 7 17 17 C 1.52735 * 110.79834 * 168.07515 * 16 14 9 18 18 C 1.53890 * 108.36068 * 296.11231 * 17 16 14 19 19 N 1.45124 * 111.60274 * 156.57884 * 12 11 10 20 20 C 1.34781 * 119.57481 * 111.32843 * 19 12 11 21 21 O 1.21279 * 120.00101 * 359.97438 * 20 19 12 22 22 C 1.50696 * 120.00012 * 180.02562 * 20 19 12 23 23 N 1.46503 * 109.47070 * 179.97438 * 22 20 19 24 24 C 1.34223 * 122.70494 * 269.88974 * 23 22 20 25 25 O 1.21220 * 125.59092 * 0.02623 * 24 23 22 26 26 C 1.51314 * 109.01326 * 179.97438 * 24 23 22 27 27 C 1.54226 * 103.69678 * 0.13233 * 26 24 23 28 28 C 1.33878 * 122.76449 * 89.99700 * 23 22 20 29 29 O 1.21222 * 125.39723 * 0.02562 * 28 23 22 30 30 H 0.97002 * 119.99693 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.87991 * 296.76903 * 10 9 7 32 32 H 1.09002 * 109.88678 * 57.78846 * 10 9 7 33 33 H 1.09000 * 110.81159 * 220.08993 * 11 10 9 34 34 H 1.08999 * 110.81542 * 96.56439 * 11 10 9 35 35 H 1.08996 * 109.21878 * 288.41518 * 16 14 9 36 36 H 1.08999 * 109.21469 * 47.78418 * 16 14 9 37 37 H 1.08999 * 109.64569 * 55.91261 * 17 16 14 38 38 H 1.09002 * 109.64534 * 176.33444 * 17 16 14 39 39 H 1.09004 * 109.98573 * 298.82308 * 18 17 16 40 40 H 1.08995 * 109.90253 * 177.72297 * 18 17 16 41 41 H 1.08992 * 109.47404 * 59.99023 * 22 20 19 42 42 H 1.09004 * 109.46734 * 299.99414 * 22 20 19 43 43 H 1.09007 * 110.60671 * 241.54106 * 26 24 23 44 44 H 1.08996 * 110.60903 * 118.72843 * 26 24 23 45 45 H 1.09000 * 110.60336 * 118.43864 * 27 26 24 46 46 H 1.08997 * 110.61058 * 241.25484 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0837 -1.2060 0.1185 9 7 1.3338 -2.3832 -0.1518 10 6 -0.1276 -2.5332 -0.2307 11 6 -0.4225 -4.0320 -0.4665 12 6 0.9098 -4.5448 -1.0553 13 1 0.9784 -4.3087 -2.1172 14 6 1.9504 -3.7263 -0.2646 15 1 2.9059 -3.6852 -0.7874 16 6 2.0946 -4.2762 1.1559 17 6 2.4450 -5.7626 1.1291 18 6 1.2711 -6.5260 0.4908 19 7 1.0683 -5.9733 -0.8539 20 6 1.0233 -6.8036 -1.9146 21 8 0.8508 -6.3558 -3.0284 22 6 1.1861 -8.2886 -1.7164 23 7 1.0989 -8.9666 -3.0122 24 6 -0.0610 -9.4093 -3.5224 25 8 -1.1479 -9.3081 -2.9953 26 6 0.2055 -10.0552 -4.8646 27 6 1.7307 -9.9119 -5.0424 28 6 2.1691 -9.1972 -3.7828 29 8 3.3088 -8.8841 -3.5135 30 1 -0.4850 0.8401 0.0004 31 1 -0.5846 -2.2080 0.7039 32 1 -0.5168 -1.9415 -1.0593 33 1 -1.2359 -4.1589 -1.1810 34 1 -0.6494 -4.5347 0.4736 35 1 2.8838 -3.7310 1.6734 36 1 1.1546 -4.1397 1.6906 37 1 3.3486 -5.9155 0.5391 38 1 2.6069 -6.1194 2.1463 39 1 0.3690 -6.3884 1.0871 40 1 1.5118 -7.5868 0.4222 41 1 0.3972 -8.6563 -1.0604 42 1 2.1575 -8.4905 -1.2650 43 1 -0.3245 -9.5263 -5.6568 44 1 -0.0817 -11.1065 -4.8482 45 1 2.2026 -10.8920 -5.1117 46 1 1.9596 -9.3140 -5.9246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049889049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:45 Heat of formation + Delta-G solvation = -82.787909 kcal Electronic energy + Delta-G solvation = -30292.885428 eV Core-core repulsion = 26182.841740 eV Total energy + Delta-G solvation = -4110.043687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97740 -41.60570 -39.65974 -39.49679 -36.93705 -36.84456 -34.60436 -34.03639 -33.78574 -31.11831 -30.06175 -28.90434 -27.10957 -26.35367 -25.84247 -23.41916 -23.31125 -22.37469 -21.91486 -20.41631 -19.61853 -18.97553 -18.78736 -18.32705 -17.64220 -17.53781 -16.84170 -16.74196 -16.41176 -16.10027 -15.77625 -15.28947 -15.27467 -15.06508 -15.03963 -14.91715 -14.48187 -14.38180 -14.12573 -13.88619 -13.66589 -13.50991 -13.31694 -13.12778 -12.84393 -12.68359 -12.40377 -12.35910 -12.09541 -12.08628 -11.99209 -11.78878 -11.71484 -11.58475 -11.55829 -11.25654 -11.11617 -10.72763 -10.63037 -9.72636 -8.93720 -7.89102 -5.23722 0.50906 1.22693 1.36825 1.42632 1.45313 1.53566 1.70178 1.99519 2.46729 3.21635 3.25286 3.27654 3.30674 3.50289 3.64510 3.78919 3.85677 3.96261 3.98556 4.00789 4.05910 4.10334 4.20105 4.25283 4.31305 4.50837 4.54404 4.60219 4.74506 4.77275 4.78022 4.91098 4.91572 4.93315 5.03793 5.14641 5.31455 5.35966 5.49706 5.53882 5.59587 5.68586 5.74801 6.13718 6.25533 6.28899 6.69744 6.94866 7.04858 7.70824 8.36803 9.21637 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002917 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.251722 B = 9597.614018 C = 9689.552527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.146 3.854 13 H 0.064 0.936 14 C 0.152 3.848 15 H 0.046 0.954 16 C -0.119 4.119 17 C -0.122 4.122 18 C 0.097 3.903 19 N -0.586 5.586 20 C 0.492 3.508 21 O -0.583 6.583 22 C 0.081 3.919 23 N -0.569 5.569 24 C 0.523 3.477 25 O -0.520 6.520 26 C -0.141 4.141 27 C -0.140 4.140 28 C 0.522 3.478 29 O -0.522 6.522 30 H 0.247 0.753 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -28.030 -4.372 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.067 3.933 11 C -0.171 4.171 12 C 0.040 3.960 13 H 0.082 0.918 14 C 0.045 3.955 15 H 0.064 0.936 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.023 4.023 19 N -0.318 5.318 20 C 0.280 3.720 21 O -0.463 6.463 22 C -0.044 4.044 23 N -0.311 5.311 24 C 0.315 3.685 25 O -0.394 6.394 26 C -0.180 4.180 27 C -0.179 4.179 28 C 0.314 3.686 29 O -0.396 6.396 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.480 -27.338 -4.475 27.812 hybrid contribution 0.102 2.179 0.171 2.188 sum 2.582 -25.158 -4.303 25.654 Atomic orbital electron populations 1.70185 1.06323 1.25308 1.57986 1.25649 0.96570 1.00939 1.02586 0.85087 0.77978 0.79326 0.77129 1.21818 1.21953 1.19050 1.19392 0.91578 0.83647 1.42093 0.90068 1.44969 1.02057 1.01677 1.85695 1.20847 0.84158 0.90657 0.97677 1.22903 0.96510 0.96641 1.01034 1.21265 0.95725 0.79871 0.99129 0.91802 1.21552 0.94130 0.84692 0.95162 0.93557 1.21890 1.01213 0.96305 0.96447 1.21964 0.97766 0.93538 1.02823 1.22397 0.99680 0.99406 0.80851 1.47639 1.70172 1.05491 1.08469 1.21522 0.75884 0.90344 0.84261 1.90678 1.51145 1.78664 1.25824 1.21763 1.08569 0.87583 0.86479 1.46737 1.11712 1.52091 1.20570 1.21845 0.81881 0.75904 0.88894 1.90766 1.25604 1.56212 1.66801 1.22592 0.96649 1.06122 0.92615 1.22587 0.95509 1.05030 0.94802 1.21763 0.83235 0.76870 0.86745 1.90768 1.20756 1.52016 1.76092 0.94373 0.96853 0.97267 0.91934 0.89570 0.93246 0.92748 0.91496 0.87385 0.89475 0.85769 0.83587 0.83624 0.84758 0.82404 0.82426 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.56 10.38 21.65 0.22 -58.34 16 2 C -0.06 -3.75 5.48 84.86 0.46 -3.29 16 3 Si 0.98 47.00 29.56 68.60 2.03 49.03 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.66 10.28 84.03 0.86 -12.79 16 8 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 9 N -0.62 -32.59 2.91 -667.06 -1.94 -34.54 16 10 C 0.19 9.94 5.20 86.79 0.45 10.39 16 11 C -0.13 -5.29 6.08 31.61 0.19 -5.10 16 12 C 0.15 5.73 3.10 46.14 0.14 5.88 16 13 H 0.06 2.99 6.96 -2.39 -0.02 2.97 16 14 C 0.15 6.38 3.60 45.07 0.16 6.54 16 15 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -3.99 5.10 30.51 0.16 -3.83 16 17 C -0.12 -2.67 6.12 30.81 0.19 -2.48 16 18 C 0.10 1.91 6.07 86.62 0.53 2.43 16 19 N -0.59 -17.43 2.73 -793.56 -2.17 -19.60 16 20 C 0.49 15.14 7.73 87.66 0.68 15.82 16 21 O -0.58 -23.47 15.76 -3.03 -0.05 -23.52 16 22 C 0.08 1.64 4.35 85.63 0.37 2.01 16 23 N -0.57 -11.47 2.05 -760.25 -1.56 -13.03 16 24 C 0.52 9.85 8.09 87.94 0.71 10.56 16 25 O -0.52 -13.78 17.50 -2.84 -0.05 -13.83 16 26 C -0.14 -0.96 7.02 30.46 0.21 -0.74 16 27 C -0.14 -0.97 7.03 30.46 0.21 -0.75 16 28 C 0.52 9.93 8.08 87.99 0.71 10.64 16 29 O -0.52 -14.02 17.48 -2.85 -0.05 -14.07 16 30 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.01 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.01 0.54 7.25 -2.39 -0.02 0.52 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.09 3.01 6.78 -2.39 -0.02 2.99 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.94 7.12 -2.39 -0.02 1.92 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.58 7.51 -2.39 -0.02 1.57 16 40 H 0.12 1.37 5.81 -2.39 -0.01 1.35 16 41 H 0.15 2.23 7.61 -2.39 -0.02 2.21 16 42 H 0.15 2.25 7.31 -2.39 -0.02 2.23 16 43 H 0.13 0.70 8.14 -2.38 -0.02 0.69 16 44 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -88.38 366.44 3.49 -84.89 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.00 Total: 7.74 kcal Atomic # 6 Polarization: 29.22 SS G_CDS: 6.05 Total: 35.27 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -5.44 Total: -125.50 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.15 Total: -51.42 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -88.38 3.49 -84.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -88.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds