Wall clock time and date at job start Tue Mar 31 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47062 * 95.24285 * 3 2 1 5 5 H 1.48505 * 109.46983 * 215.24067 * 3 2 1 6 6 H 1.48497 * 109.47521 * 335.23882 * 3 2 1 7 7 C 1.38808 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00101 * 28.90446 * 7 2 1 9 9 N 1.36938 * 120.00162 * 208.91037 * 7 2 1 10 10 C 1.46884 * 125.58164 * 9.87218 * 9 7 2 11 11 C 1.54055 * 107.70614 * 182.96928 * 10 9 7 12 12 C 1.54067 * 103.74538 * 17.13366 * 11 10 9 13 13 H 1.08996 * 109.16266 * 86.45613 * 12 11 10 14 14 C 1.47659 * 125.58257 * 189.56609 * 9 7 2 15 15 H 1.09002 * 110.56464 * 38.35244 * 14 9 7 16 16 C 1.50717 * 107.72793 * 277.34509 * 14 9 7 17 17 C 1.52944 * 109.66528 * 187.94725 * 16 14 9 18 18 C 1.53051 * 108.49362 * 65.79450 * 17 16 14 19 19 N 1.44192 * 111.76830 * 207.39952 * 12 11 10 20 20 C 1.34771 * 117.75672 * 266.46278 * 19 12 11 21 21 O 1.21276 * 120.00309 * 359.97438 * 20 19 12 22 22 C 1.50703 * 119.99582 * 179.97438 * 20 19 12 23 23 N 1.46503 * 109.47053 * 179.97438 * 22 20 19 24 24 C 1.33871 * 122.76309 * 269.70896 * 23 22 20 25 25 O 1.21232 * 125.39838 * 359.97438 * 24 23 22 26 26 C 1.51314 * 109.20983 * 179.84039 * 24 23 22 27 27 C 1.54229 * 103.55173 * 0.38881 * 26 24 23 28 28 C 1.33873 * 122.76038 * 90.00106 * 23 22 20 29 29 O 1.21230 * 125.40149 * 359.97438 * 28 23 22 30 30 H 0.97001 * 119.99826 * 184.69172 * 1 2 3 31 31 H 1.09005 * 109.80714 * 302.51870 * 10 9 7 32 32 H 1.08994 * 109.81156 * 63.35330 * 10 9 7 33 33 H 1.09005 * 110.57177 * 135.69474 * 11 10 9 34 34 H 1.08994 * 110.57162 * 258.41783 * 11 10 9 35 35 H 1.08993 * 109.64128 * 67.78742 * 16 14 9 36 36 H 1.08999 * 109.31776 * 307.90739 * 16 14 9 37 37 H 1.08991 * 109.63295 * 306.09328 * 17 16 14 38 38 H 1.09002 * 109.79721 * 185.58991 * 17 16 14 39 39 H 1.08999 * 109.45760 * 186.16886 * 18 17 16 40 40 H 1.08998 * 109.45974 * 66.22112 * 18 17 16 41 41 H 1.08999 * 109.47265 * 299.99530 * 22 20 19 42 42 H 1.08996 * 109.47198 * 59.99869 * 22 20 19 43 43 H 1.08996 * 110.80311 * 241.78264 * 26 24 23 44 44 H 1.09007 * 110.41509 * 118.81039 * 26 24 23 45 45 H 1.08996 * 110.60778 * 241.25507 * 27 26 24 46 46 H 1.09004 * 110.74093 * 118.35758 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6084 1.9824 1.3942 5 1 3.4880 1.4747 -0.8079 6 1 1.3967 2.6821 -0.5864 7 6 2.0103 -1.2021 -0.0005 8 1 1.5713 -2.0790 -0.4530 9 7 3.2517 -1.2762 0.5727 10 6 3.8772 -0.2320 1.3948 11 6 5.2945 -0.7111 1.7622 12 6 5.5711 -1.8430 0.7542 13 1 5.9784 -1.4148 -0.1616 14 6 4.1781 -2.4215 0.4710 15 1 4.1412 -2.8563 -0.5279 16 6 3.7688 -3.4363 1.5074 17 6 4.8135 -4.5512 1.5770 18 6 6.1237 -3.9568 2.0990 19 7 6.5006 -2.8119 1.2799 20 6 7.8073 -2.6476 0.9937 21 8 8.1661 -1.7090 0.3145 22 6 8.8227 -3.6302 1.5177 23 7 10.1607 -3.2346 1.0711 24 6 10.6994 -3.6680 -0.0752 25 8 10.1648 -4.4188 -0.8627 26 6 12.0801 -3.0696 -0.2340 27 6 12.2517 -2.2141 1.0377 28 6 10.9476 -2.4146 1.7786 29 8 10.6608 -1.9118 2.8438 30 1 -0.4850 -0.8372 0.0687 31 1 3.9366 0.6977 0.8287 32 1 3.2925 -0.0757 2.3012 33 1 6.0160 0.0966 1.6385 34 1 5.3177 -1.0907 2.7836 35 1 2.8015 -3.8623 1.2411 36 1 3.6937 -2.9489 2.4794 37 1 4.9711 -4.9679 0.5823 38 1 4.4722 -5.3353 2.2528 39 1 6.9090 -4.7112 2.0517 40 1 5.9907 -3.6359 3.1321 41 1 8.7909 -3.6393 2.6072 42 1 8.5934 -4.6263 1.1392 43 1 12.1312 -2.4453 -1.1260 44 1 12.8336 -3.8565 -0.2716 45 1 12.3881 -1.1643 0.7783 46 1 13.0907 -2.5728 1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049889050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:49 Heat of formation + Delta-G solvation = -51.816186 kcal Electronic energy + Delta-G solvation = -30433.093154 eV Core-core repulsion = 26324.392502 eV Total energy + Delta-G solvation = -4108.700653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29708 -40.57918 -38.86621 -38.23972 -36.12519 -35.71684 -33.86673 -32.88624 -32.46702 -29.91164 -28.99603 -28.01861 -26.55512 -24.76112 -23.98277 -22.74645 -22.09605 -21.54631 -20.51013 -19.46419 -18.44372 -18.02131 -17.48570 -17.37395 -16.85606 -16.80538 -15.81357 -15.46731 -15.41720 -15.04349 -14.52238 -14.38977 -14.27250 -14.17325 -13.89684 -13.75720 -13.64717 -13.43043 -13.15572 -12.97845 -12.77103 -12.38941 -11.99497 -11.86243 -11.79660 -11.35027 -11.25052 -11.11705 -11.01541 -10.69362 -10.63171 -10.52043 -10.38605 -10.36903 -9.97680 -9.63307 -9.52681 -9.15718 -8.55266 -8.43856 -7.11518 -6.37242 -3.19191 1.20097 1.96552 2.37679 2.44150 3.00481 3.46448 3.57023 3.67919 3.73789 3.81481 4.01710 4.19633 4.43646 4.58461 4.63767 4.67665 4.78892 4.92357 4.96765 5.00821 5.05252 5.15330 5.16179 5.17034 5.20106 5.28600 5.37623 5.52194 5.57757 5.78814 5.84481 5.93044 5.97920 6.15883 6.26745 6.39920 6.42395 6.52293 6.59943 6.68638 6.77968 6.95272 6.96742 7.26543 7.42015 7.68288 8.04550 8.33152 9.00667 9.56184 10.22765 11.11844 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.003255 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.438771 B = 8599.782923 C = 9158.665460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.010 4.010 3 Si 1.052 2.948 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.123 3.877 11 C -0.136 4.136 12 C 0.135 3.865 13 H 0.096 0.904 14 C 0.159 3.841 15 H 0.058 0.942 16 C -0.125 4.125 17 C -0.132 4.132 18 C 0.105 3.895 19 N -0.583 5.583 20 C 0.495 3.505 21 O -0.531 6.531 22 C 0.079 3.921 23 N -0.559 5.559 24 C 0.531 3.469 25 O -0.479 6.479 26 C -0.154 4.154 27 C -0.154 4.154 28 C 0.531 3.469 29 O -0.479 6.479 30 H 0.264 0.736 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.601 -10.986 5.324 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.212 4.212 3 Si 0.885 3.115 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.227 1.227 7 C -0.457 4.457 8 H 0.097 0.903 9 N -0.327 5.327 10 C -0.002 4.002 11 C -0.175 4.175 12 C 0.031 3.969 13 H 0.114 0.886 14 C 0.051 3.949 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.171 4.171 18 C -0.018 4.018 19 N -0.315 5.315 20 C 0.281 3.719 21 O -0.407 6.407 22 C -0.046 4.046 23 N -0.302 5.302 24 C 0.320 3.680 25 O -0.350 6.350 26 C -0.193 4.193 27 C -0.194 4.194 28 C 0.320 3.680 29 O -0.350 6.350 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.965 -8.967 4.994 26.992 hybrid contribution 0.026 -1.620 0.127 1.625 sum 24.990 -10.588 5.121 27.619 Atomic orbital electron populations 1.70906 1.06182 1.29336 1.48634 1.25725 0.96068 1.00604 0.98767 0.83985 0.74243 0.76983 0.76273 1.22149 1.22047 1.22694 1.19976 0.89714 0.98031 1.37947 0.90348 1.44922 1.15858 1.14002 1.57894 1.21506 0.91153 0.92626 0.94918 1.22674 0.97625 0.98158 0.99030 1.21258 0.89892 0.88266 0.97490 0.88633 1.20604 0.87118 0.89930 0.97208 0.92357 1.21624 0.98132 0.95761 1.00955 1.21852 0.94735 0.98749 1.01760 1.21613 0.98274 0.87131 0.94777 1.47059 1.06010 1.26896 1.51523 1.20738 0.83704 0.86543 0.80949 1.90709 1.79566 1.32086 1.38329 1.21692 0.80636 0.99525 1.02707 1.46356 1.16189 1.44791 1.22896 1.20841 0.88490 0.79350 0.79332 1.90797 1.67402 1.33292 1.43486 1.22450 0.94824 1.01530 1.00520 1.22452 0.96352 1.04297 0.96261 1.20838 0.86586 0.76194 0.84374 1.90794 1.77280 1.46671 1.20246 0.92576 0.95415 0.94159 0.91205 0.91383 0.91382 0.91867 0.91425 0.90658 0.90395 0.91271 0.85865 0.85813 0.85871 0.86080 0.85922 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.44 13.70 55.49 0.76 -27.68 16 2 C -0.01 -0.30 5.41 -17.43 -0.09 -0.39 16 3 Si 1.05 27.32 24.76 -169.99 -4.21 23.11 16 4 H -0.29 -7.21 6.77 56.52 0.38 -6.83 16 5 H -0.29 -7.44 6.89 56.52 0.39 -7.05 16 6 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 7 C -0.33 -9.35 10.39 -15.06 -0.16 -9.51 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 N -0.60 -14.68 2.80 -164.85 -0.46 -15.14 16 10 C 0.12 2.79 5.07 -3.28 -0.02 2.77 16 11 C -0.14 -2.53 6.45 -25.62 -0.17 -2.69 16 12 C 0.14 2.47 2.79 -68.36 -0.19 2.28 16 13 H 0.10 1.97 7.10 -51.93 -0.37 1.60 16 14 C 0.16 3.17 3.16 -68.19 -0.22 2.95 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.12 -2.09 5.21 -27.90 -0.15 -2.24 16 17 C -0.13 -1.58 6.09 -26.73 -0.16 -1.74 16 18 C 0.10 1.13 6.06 -4.43 -0.03 1.10 16 19 N -0.58 -8.49 2.80 -167.43 -0.47 -8.96 16 20 C 0.50 7.35 7.65 -10.99 -0.08 7.27 16 21 O -0.53 -9.88 15.71 5.56 0.09 -9.79 16 22 C 0.08 0.83 4.36 -5.19 -0.02 0.81 16 23 N -0.56 -5.82 2.04 -116.62 -0.24 -6.06 16 24 C 0.53 5.26 8.07 -11.09 -0.09 5.17 16 25 O -0.48 -6.41 17.47 5.60 0.10 -6.31 16 26 C -0.15 -0.73 7.03 -26.94 -0.19 -0.92 16 27 C -0.15 -0.73 7.03 -26.94 -0.19 -0.92 16 28 C 0.53 5.24 8.08 -11.09 -0.09 5.15 16 29 O -0.48 -6.37 17.48 5.60 0.10 -6.28 16 30 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 31 H 0.03 0.68 3.50 -51.93 -0.18 0.50 16 32 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.58 5.81 -51.93 -0.30 0.28 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 1.06 7.72 -51.93 -0.40 0.66 16 42 H 0.12 1.06 6.99 -51.93 -0.36 0.70 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -37.92 363.98 -7.40 -45.32 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.71 Total: -2.79 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.84 Total: 9.09 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.41 Total: -57.84 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.28 Total: -22.38 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.21 Total: 23.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.92 -7.40 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.497 kcal (2) G-P(sol) polarization free energy of solvation -37.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds