Wall clock time and date at job start Tue Mar 31 2020 18:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47062 * 95.24285 * 3 2 1 5 5 H 1.48505 * 109.46983 * 215.24067 * 3 2 1 6 6 H 1.48497 * 109.47521 * 335.23882 * 3 2 1 7 7 C 1.38808 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00101 * 28.90446 * 7 2 1 9 9 N 1.36938 * 120.00162 * 208.91037 * 7 2 1 10 10 C 1.46884 * 125.58164 * 9.87218 * 9 7 2 11 11 C 1.54055 * 107.70614 * 182.96928 * 10 9 7 12 12 C 1.54067 * 103.74538 * 17.13366 * 11 10 9 13 13 H 1.08996 * 109.16266 * 86.45613 * 12 11 10 14 14 C 1.47659 * 125.58257 * 189.56609 * 9 7 2 15 15 H 1.09002 * 110.56464 * 38.35244 * 14 9 7 16 16 C 1.50717 * 107.72793 * 277.34509 * 14 9 7 17 17 C 1.52944 * 109.66528 * 187.94725 * 16 14 9 18 18 C 1.53051 * 108.49362 * 65.79450 * 17 16 14 19 19 N 1.44192 * 111.76830 * 207.39952 * 12 11 10 20 20 C 1.34771 * 117.75672 * 266.46278 * 19 12 11 21 21 O 1.21276 * 120.00309 * 359.97438 * 20 19 12 22 22 C 1.50703 * 119.99582 * 179.97438 * 20 19 12 23 23 N 1.46503 * 109.47053 * 179.97438 * 22 20 19 24 24 C 1.33871 * 122.76309 * 269.70896 * 23 22 20 25 25 O 1.21232 * 125.39838 * 359.97438 * 24 23 22 26 26 C 1.51314 * 109.20983 * 179.84039 * 24 23 22 27 27 C 1.54229 * 103.55173 * 0.38881 * 26 24 23 28 28 C 1.33873 * 122.76038 * 90.00106 * 23 22 20 29 29 O 1.21230 * 125.40149 * 359.97438 * 28 23 22 30 30 H 0.97001 * 119.99826 * 184.69172 * 1 2 3 31 31 H 1.09005 * 109.80714 * 302.51870 * 10 9 7 32 32 H 1.08994 * 109.81156 * 63.35330 * 10 9 7 33 33 H 1.09005 * 110.57177 * 135.69474 * 11 10 9 34 34 H 1.08994 * 110.57162 * 258.41783 * 11 10 9 35 35 H 1.08993 * 109.64128 * 67.78742 * 16 14 9 36 36 H 1.08999 * 109.31776 * 307.90739 * 16 14 9 37 37 H 1.08991 * 109.63295 * 306.09328 * 17 16 14 38 38 H 1.09002 * 109.79721 * 185.58991 * 17 16 14 39 39 H 1.08999 * 109.45760 * 186.16886 * 18 17 16 40 40 H 1.08998 * 109.45974 * 66.22112 * 18 17 16 41 41 H 1.08999 * 109.47265 * 299.99530 * 22 20 19 42 42 H 1.08996 * 109.47198 * 59.99869 * 22 20 19 43 43 H 1.08996 * 110.80311 * 241.78264 * 26 24 23 44 44 H 1.09007 * 110.41509 * 118.81039 * 26 24 23 45 45 H 1.08996 * 110.60778 * 241.25507 * 27 26 24 46 46 H 1.09004 * 110.74093 * 118.35758 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6084 1.9824 1.3942 5 1 3.4880 1.4747 -0.8079 6 1 1.3967 2.6821 -0.5864 7 6 2.0103 -1.2021 -0.0005 8 1 1.5713 -2.0790 -0.4530 9 7 3.2517 -1.2762 0.5727 10 6 3.8772 -0.2320 1.3948 11 6 5.2945 -0.7111 1.7622 12 6 5.5711 -1.8430 0.7542 13 1 5.9784 -1.4148 -0.1616 14 6 4.1781 -2.4215 0.4710 15 1 4.1412 -2.8563 -0.5279 16 6 3.7688 -3.4363 1.5074 17 6 4.8135 -4.5512 1.5770 18 6 6.1237 -3.9568 2.0990 19 7 6.5006 -2.8119 1.2799 20 6 7.8073 -2.6476 0.9937 21 8 8.1661 -1.7090 0.3145 22 6 8.8227 -3.6302 1.5177 23 7 10.1607 -3.2346 1.0711 24 6 10.6994 -3.6680 -0.0752 25 8 10.1648 -4.4188 -0.8627 26 6 12.0801 -3.0696 -0.2340 27 6 12.2517 -2.2141 1.0377 28 6 10.9476 -2.4146 1.7786 29 8 10.6608 -1.9118 2.8438 30 1 -0.4850 -0.8372 0.0687 31 1 3.9366 0.6977 0.8287 32 1 3.2925 -0.0757 2.3012 33 1 6.0160 0.0966 1.6385 34 1 5.3177 -1.0907 2.7836 35 1 2.8015 -3.8623 1.2411 36 1 3.6937 -2.9489 2.4794 37 1 4.9711 -4.9679 0.5823 38 1 4.4722 -5.3353 2.2528 39 1 6.9090 -4.7112 2.0517 40 1 5.9907 -3.6359 3.1321 41 1 8.7909 -3.6393 2.6072 42 1 8.5934 -4.6263 1.1392 43 1 12.1312 -2.4453 -1.1260 44 1 12.8336 -3.8565 -0.2716 45 1 12.3881 -1.1643 0.7783 46 1 13.0907 -2.5728 1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049889050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:48 Heat of formation + Delta-G solvation = -79.786725 kcal Electronic energy + Delta-G solvation = -30434.306048 eV Core-core repulsion = 26324.392502 eV Total energy + Delta-G solvation = -4109.913546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.04273 -41.83343 -39.66948 -39.66158 -37.15832 -36.91546 -34.78722 -34.29953 -34.13409 -31.58688 -30.47366 -29.02893 -27.11460 -26.03479 -25.86077 -23.47120 -23.33600 -22.93143 -22.01427 -20.42913 -19.83924 -19.33989 -18.96887 -18.33285 -17.72180 -17.56136 -17.32778 -16.93141 -16.57404 -15.96177 -15.74476 -15.66214 -15.34674 -15.28713 -15.14889 -14.92923 -14.79720 -14.63183 -14.31074 -14.13001 -13.73403 -13.57911 -13.46844 -13.32935 -13.10695 -12.85988 -12.53228 -12.38028 -12.10589 -12.01026 -11.91013 -11.78822 -11.70771 -11.60148 -11.40341 -11.20318 -11.12540 -10.66737 -10.61986 -9.80452 -9.19902 -8.71556 -5.45625 0.49909 1.21086 1.32340 1.34972 1.45324 1.64998 1.68693 1.95606 2.46753 2.91805 3.17989 3.20449 3.26522 3.28438 3.59821 3.62864 3.63686 3.83800 3.89000 3.95115 3.99128 4.04385 4.10332 4.19403 4.23037 4.29402 4.40085 4.51040 4.64114 4.66053 4.72700 4.76662 4.81110 4.90904 4.92700 4.94182 5.03896 5.08089 5.24661 5.38192 5.50136 5.57917 5.73671 6.06563 6.14521 6.28086 6.68543 6.75616 6.90644 7.40394 8.06090 8.79218 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.003255 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.438771 B = 8599.782923 C = 9158.665460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 1.093 2.907 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.302 1.302 7 C -0.315 4.315 8 H 0.052 0.948 9 N -0.621 5.621 10 C 0.117 3.883 11 C -0.122 4.122 12 C 0.151 3.849 13 H 0.065 0.935 14 C 0.156 3.844 15 H 0.039 0.961 16 C -0.117 4.117 17 C -0.122 4.122 18 C 0.098 3.902 19 N -0.583 5.583 20 C 0.489 3.511 21 O -0.576 6.576 22 C 0.080 3.920 23 N -0.568 5.568 24 C 0.522 3.478 25 O -0.522 6.522 26 C -0.141 4.141 27 C -0.141 4.141 28 C 0.523 3.477 29 O -0.520 6.520 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.157 0.843 45 H 0.135 0.865 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.718 -12.308 7.010 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.259 4.259 3 Si 0.922 3.078 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.231 1.231 7 C -0.443 4.443 8 H 0.070 0.930 9 N -0.347 5.347 10 C -0.008 4.008 11 C -0.161 4.161 12 C 0.044 3.956 13 H 0.083 0.917 14 C 0.049 3.951 15 H 0.057 0.943 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.022 4.022 19 N -0.314 5.314 20 C 0.277 3.723 21 O -0.455 6.455 22 C -0.045 4.045 23 N -0.310 5.310 24 C 0.314 3.686 25 O -0.396 6.396 26 C -0.180 4.180 27 C -0.180 4.180 28 C 0.315 3.685 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.174 0.826 45 H 0.153 0.847 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 29.139 -10.341 6.710 31.639 hybrid contribution -1.257 -1.321 -0.445 1.877 sum 27.881 -11.662 6.265 30.865 Atomic orbital electron populations 1.70982 1.07151 1.28714 1.51970 1.26714 0.96179 1.03535 0.99427 0.83392 0.73100 0.73802 0.77482 1.19766 1.21712 1.23076 1.19852 0.91273 0.96866 1.36356 0.93019 1.44999 1.15620 1.16043 1.58049 1.21588 0.93332 0.91841 0.94014 1.22583 0.94889 0.98378 1.00270 1.20727 0.89269 0.88978 0.96585 0.91677 1.20785 0.87592 0.89243 0.97465 0.94290 1.21441 0.98734 0.96386 0.99123 1.21814 0.93732 0.97604 1.02882 1.21998 0.98812 0.86654 0.94769 1.47106 1.05484 1.27144 1.51688 1.21564 0.84116 0.86656 0.79979 1.90683 1.80306 1.34222 1.40335 1.21807 0.79881 0.98826 1.03986 1.46642 1.16040 1.44936 1.23355 1.21774 0.90091 0.78417 0.78330 1.90774 1.68864 1.35366 1.44638 1.22591 0.92177 1.02298 1.00902 1.22591 0.94451 1.05186 0.95737 1.21753 0.87964 0.74942 0.83885 1.90770 1.78413 1.48114 1.22132 0.93759 0.96693 0.94719 0.90736 0.88932 0.93730 0.92173 0.91608 0.87168 0.86087 0.89331 0.83470 0.83640 0.84716 0.82569 0.84715 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.70 21.65 0.30 -60.95 16 2 C -0.06 -3.82 5.41 84.86 0.46 -3.37 16 3 Si 1.09 56.65 24.76 68.60 1.70 58.35 16 4 H -0.27 -12.94 6.77 99.48 0.67 -12.26 16 5 H -0.29 -14.66 6.89 99.48 0.69 -13.97 16 6 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 7 C -0.32 -18.59 10.39 84.03 0.87 -17.72 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 N -0.62 -31.06 2.80 -675.48 -1.89 -32.95 16 10 C 0.12 5.30 5.07 86.66 0.44 5.74 16 11 C -0.12 -4.41 6.45 31.31 0.20 -4.21 16 12 C 0.15 5.44 2.79 45.94 0.13 5.57 16 13 H 0.07 2.75 7.10 -2.39 -0.02 2.74 16 14 C 0.16 6.29 3.16 44.19 0.14 6.43 16 15 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 16 C -0.12 -3.85 5.21 29.83 0.16 -3.70 16 17 C -0.12 -2.55 6.09 30.59 0.19 -2.37 16 18 C 0.10 1.73 6.06 86.54 0.52 2.25 16 19 N -0.58 -15.83 2.80 -802.02 -2.24 -18.07 16 20 C 0.49 13.72 7.65 87.66 0.67 14.39 16 21 O -0.58 -21.27 15.71 -3.02 -0.05 -21.32 16 22 C 0.08 1.45 4.36 85.63 0.37 1.82 16 23 N -0.57 -10.43 2.04 -760.72 -1.55 -11.98 16 24 C 0.52 9.13 8.07 87.99 0.71 9.84 16 25 O -0.52 -13.27 17.47 -2.88 -0.05 -13.32 16 26 C -0.14 -0.80 7.03 30.46 0.21 -0.58 16 27 C -0.14 -0.77 7.03 30.46 0.21 -0.56 16 28 C 0.52 8.97 8.08 87.99 0.71 9.68 16 29 O -0.52 -12.86 17.48 -2.88 -0.05 -12.91 16 30 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 31 H 0.02 0.75 3.50 -2.38 -0.01 0.74 16 32 H 0.03 1.60 8.09 -2.39 -0.02 1.59 16 33 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 1.17 5.81 -2.39 -0.01 1.16 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.15 1.96 7.72 -2.39 -0.02 1.94 16 42 H 0.15 1.98 6.99 -2.39 -0.02 1.96 16 43 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.16 -0.15 8.14 -2.38 -0.02 -0.17 16 45 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -89.58 363.98 3.06 -86.52 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 0.91 Total: 3.42 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 6.00 Total: 23.22 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.39 Total: -123.96 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.15 Total: -47.55 kcal Atomic # 14 Polarization: 56.65 SS G_CDS: 1.70 Total: 58.35 kcal Total: -89.58 3.06 -86.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049889050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.734 kcal (2) G-P(sol) polarization free energy of solvation -89.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds