Wall clock time and date at job start Tue Mar 31 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.48377 * 126.56066 * 0.30239 * 9 7 2 11 11 C 1.55469 * 106.97288 * 185.52167 * 10 9 7 12 12 C 1.53429 * 101.67341 * 22.59986 * 11 10 9 13 13 H 1.08998 * 111.15335 * 77.99068 * 12 11 10 14 14 C 1.45018 * 126.55967 * 179.97438 * 9 7 2 15 15 H 1.09003 * 108.70019 * 264.09905 * 14 9 7 16 16 C 1.51075 * 119.79268 * 28.67465 * 14 9 7 17 17 C 1.53865 * 108.01685 * 182.98656 * 16 14 9 18 18 C 1.52717 * 111.51982 * 303.24906 * 17 16 14 19 19 N 1.45732 * 116.36946 * 206.45385 * 12 11 10 20 20 C 1.34778 * 122.22302 * 350.07621 * 19 12 11 21 21 O 1.21275 * 120.00253 * 359.97438 * 20 19 12 22 22 C 1.50703 * 119.99627 * 179.97438 * 20 19 12 23 23 C 1.53001 * 109.46892 * 179.97438 * 22 20 19 24 24 H 1.08995 * 110.54213 * 56.39133 * 23 22 20 25 25 C 1.54228 * 110.60509 * 179.41055 * 23 22 20 26 26 C 1.51312 * 103.55706 * 118.51496 * 25 23 22 27 27 O 1.21229 * 125.40000 * 179.97438 * 26 25 23 28 28 N 1.33877 * 109.20623 * 0.02562 * 26 25 23 29 29 C 1.33883 * 114.47508 * 0.02562 * 28 26 25 30 30 O 1.21224 * 125.39707 * 179.97438 * 29 28 26 31 31 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.96319 * 304.90049 * 10 9 7 33 33 H 1.08997 * 109.96055 * 66.11061 * 10 9 7 34 34 H 1.09008 * 110.98912 * 140.69595 * 11 10 9 35 35 H 1.08994 * 110.99121 * 264.50132 * 11 10 9 36 36 H 1.09003 * 109.40278 * 63.40068 * 16 14 9 37 37 H 1.09001 * 109.75933 * 302.77837 * 16 14 9 38 38 H 1.09003 * 109.06844 * 182.72566 * 17 16 14 39 39 H 1.08994 * 109.01924 * 63.73876 * 17 16 14 40 40 H 1.08999 * 109.15990 * 288.12297 * 18 17 16 41 41 H 1.08998 * 109.16097 * 168.94243 * 18 17 16 42 42 H 1.08997 * 109.46920 * 299.99532 * 22 20 19 43 43 H 1.08998 * 109.46963 * 59.99712 * 22 20 19 44 44 H 1.08993 * 110.60773 * 237.03378 * 25 23 22 45 45 H 1.09004 * 110.60624 * 0.02562 * 25 23 22 46 46 H 0.97001 * 122.76366 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1484 -2.5576 0.0071 11 6 -0.4302 -4.0790 0.1585 12 6 0.8710 -4.5731 0.8040 13 1 0.8947 -4.3412 1.8688 14 6 1.9025 -3.7185 0.0077 15 1 1.9395 -4.0841 -1.0186 16 6 3.2593 -3.9480 0.6312 17 6 3.6384 -5.4236 0.4163 18 6 2.5822 -6.3633 0.9939 19 7 1.2248 -5.9662 0.5633 20 6 0.3713 -6.8349 -0.0141 21 8 -0.7334 -6.4658 -0.3520 22 6 0.7898 -8.2649 -0.2398 23 6 -0.3548 -9.0324 -0.9045 24 1 -0.6529 -8.5461 -1.8333 25 6 0.0514 -10.4979 -1.1613 26 6 -0.9407 -11.2904 -0.3382 27 8 -0.9774 -12.4993 -0.2554 28 7 -1.7722 -10.4450 0.2832 29 6 -1.5347 -9.1509 0.0355 30 8 -2.1645 -8.2213 0.4924 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5855 -2.0132 0.8442 33 1 -0.5651 -2.1931 -0.9318 34 1 -1.2828 -4.2549 0.8146 35 1 -0.5853 -4.5460 -0.8141 36 1 3.2092 -3.7297 1.6980 37 1 3.9975 -3.3025 0.1553 38 1 4.5941 -5.6202 0.9023 39 1 3.7372 -5.6129 -0.6526 40 1 2.6346 -6.3345 2.0823 41 1 2.7827 -7.3792 0.6538 42 1 1.6672 -8.2890 -0.8860 43 1 1.0302 -8.7284 0.7169 44 1 -0.0452 -10.7431 -2.2189 45 1 1.0687 -10.6803 -0.8151 46 1 -2.4878 -10.7453 0.8651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049933333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:27 Heat of formation + Delta-G solvation = -59.742530 kcal Electronic energy + Delta-G solvation = -30229.170197 eV Core-core repulsion = 26120.125833 eV Total energy + Delta-G solvation = -4109.044365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11848 -40.24720 -38.83544 -37.71473 -36.11108 -35.41305 -33.85203 -32.58617 -32.15487 -29.58442 -28.50148 -28.12840 -25.63188 -24.46722 -24.12233 -22.12663 -21.51917 -21.38990 -20.46869 -19.65528 -18.76774 -18.09765 -17.15295 -16.77045 -16.42846 -16.09301 -15.68111 -15.53518 -15.00714 -14.74383 -14.42156 -14.26270 -14.25197 -14.08669 -13.81513 -13.50834 -13.22631 -12.97419 -12.89407 -12.42151 -12.22299 -12.18578 -11.80902 -11.65861 -11.53748 -11.10802 -10.95296 -10.83043 -10.71032 -10.55233 -10.51119 -10.41940 -10.16172 -10.09932 -9.94936 -9.79673 -9.60183 -8.94705 -8.55871 -8.17469 -6.80656 -5.67789 -3.02350 1.24313 2.45465 2.48947 2.85175 3.10269 3.41374 3.45511 3.47338 3.72998 3.87458 3.98790 4.29068 4.50627 4.59139 4.75903 4.85461 4.93325 5.05525 5.10728 5.22605 5.25046 5.38225 5.44061 5.46791 5.61050 5.64908 5.69789 5.77759 5.88737 6.00739 6.10738 6.27486 6.31715 6.35257 6.39635 6.59412 6.73566 6.82050 6.94547 7.02634 7.21386 7.60555 7.63287 7.67945 7.75062 7.87341 8.27743 8.46528 9.21439 9.85452 10.53913 11.43999 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.002831 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.652503 B = 9886.651529 C =10665.612245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.118 3.882 13 H 0.076 0.924 14 C 0.160 3.840 15 H 0.015 0.985 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.111 3.889 19 N -0.602 5.602 20 C 0.505 3.495 21 O -0.502 6.502 22 C -0.128 4.128 23 C -0.109 4.109 24 H 0.133 0.867 25 C -0.155 4.155 26 C 0.531 3.469 27 O -0.492 6.492 28 N -0.686 5.686 29 C 0.521 3.479 30 O -0.434 6.434 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -22.333 -0.211 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.165 4.165 12 C 0.014 3.986 13 H 0.094 0.906 14 C 0.051 3.949 15 H 0.033 0.967 16 C -0.156 4.156 17 C -0.167 4.167 18 C -0.012 4.012 19 N -0.336 5.336 20 C 0.291 3.709 21 O -0.376 6.376 22 C -0.169 4.169 23 C -0.131 4.131 24 H 0.151 0.849 25 C -0.195 4.195 26 C 0.319 3.681 27 O -0.365 6.365 28 N -0.352 5.352 29 C 0.306 3.694 30 O -0.300 6.300 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.678 -21.925 -0.222 22.232 hybrid contribution 0.248 0.753 0.386 0.882 sum 3.926 -21.172 0.164 21.533 Atomic orbital electron populations 1.69938 1.04881 1.25173 1.56640 1.24806 0.95657 0.97612 1.02263 0.86236 0.78471 0.83426 0.77819 1.21229 1.21628 1.21211 1.18933 0.90261 0.82262 1.44121 0.90463 1.44060 1.01836 0.99280 1.86492 1.21747 0.83473 0.89015 1.01001 1.22923 0.94650 0.97633 1.01306 1.22416 0.98736 0.78347 0.99115 0.90576 1.20740 0.91335 0.87246 0.95596 0.96724 1.21419 0.98652 0.94097 1.01402 1.21874 0.97600 0.95782 1.01424 1.21686 0.81913 0.98160 0.99469 1.47959 1.14090 1.10895 1.60646 1.20223 0.85104 0.86834 0.78733 1.90821 1.19857 1.77719 1.49229 1.21667 0.98384 0.94019 1.02796 1.21834 0.94201 0.95809 1.01221 0.84876 1.22602 1.00853 0.92879 1.03161 1.20768 0.81723 0.86782 0.78829 1.90815 1.71333 1.12568 1.61768 1.44906 1.33763 1.09971 1.46602 1.20709 0.85689 0.81437 0.81565 1.90943 1.49916 1.40144 1.48947 0.93665 0.92624 0.94368 0.92073 0.90141 0.91907 0.91576 0.90937 0.91811 0.91679 0.90546 0.87150 0.88741 0.85774 0.85909 0.74754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 10.46 55.49 0.58 -26.75 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.25 9.97 -15.06 -0.15 -6.40 16 8 H 0.08 2.02 7.38 -52.49 -0.39 1.63 16 9 N -0.59 -15.08 3.35 -163.08 -0.55 -15.63 16 10 C 0.17 4.37 5.47 -1.70 -0.01 4.36 16 11 C -0.13 -2.70 4.97 -25.20 -0.13 -2.82 16 12 C 0.12 2.20 3.31 -66.61 -0.22 1.98 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 14 C 0.16 3.25 2.63 -68.18 -0.18 3.08 16 15 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 16 C -0.12 -1.91 5.44 -27.25 -0.15 -2.06 16 17 C -0.13 -1.44 5.95 -26.43 -0.16 -1.60 16 18 C 0.11 1.13 6.32 -3.45 -0.02 1.11 16 19 N -0.60 -8.60 2.93 -163.79 -0.48 -9.08 16 20 C 0.50 6.95 7.37 -10.98 -0.08 6.87 16 21 O -0.50 -8.94 10.42 -17.44 -0.18 -9.12 16 22 C -0.13 -0.98 3.46 -27.88 -0.10 -1.08 16 23 C -0.11 -0.80 2.72 -90.83 -0.25 -1.05 16 24 H 0.13 1.02 8.03 -51.93 -0.42 0.61 16 25 C -0.16 -0.69 6.67 -26.94 -0.18 -0.87 16 26 C 0.53 4.07 8.55 -11.09 -0.09 3.98 16 27 O -0.49 -5.40 18.02 5.60 0.10 -5.30 16 28 N -0.69 -5.47 5.48 -11.39 -0.06 -5.53 16 29 C 0.52 5.44 7.71 -11.08 -0.09 5.36 16 30 O -0.43 -6.73 15.43 -17.40 -0.27 -7.00 16 31 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.06 1.55 7.18 -51.93 -0.37 1.17 16 33 H 0.04 1.06 7.81 -51.93 -0.41 0.66 16 34 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.08 1.77 6.27 -51.93 -0.33 1.44 16 36 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 37 H 0.07 1.13 7.78 -51.93 -0.40 0.73 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.50 6.18 -51.93 -0.32 0.18 16 42 H 0.11 0.53 7.76 -51.93 -0.40 0.13 16 43 H 0.09 0.57 8.01 -51.93 -0.42 0.15 16 44 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.12 0.29 7.74 -51.93 -0.40 -0.11 16 46 H 0.41 2.85 8.96 -40.82 -0.37 2.48 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -36.66 359.39 -9.09 -45.75 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.73 Total: -0.35 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -1.89 Total: 10.55 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.51 Total: -56.98 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.35 Total: -21.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.66 -9.09 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049933333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.991 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds