Wall clock time and date at job start Tue Mar 31 2020 18:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48501 * 109.46890 * 274.98703 * 3 2 1 5 5 H 1.48496 * 109.47385 * 34.98642 * 3 2 1 6 6 H 1.48495 * 109.47052 * 154.99006 * 3 2 1 7 7 C 1.38805 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00272 * 186.25181 * 7 2 1 9 9 N 1.36939 * 119.99827 * 6.26327 * 7 2 1 10 10 C 1.46890 * 125.58117 * 353.16903 * 9 7 2 11 11 C 1.54050 * 107.70924 * 182.96856 * 10 9 7 12 12 C 1.54076 * 103.74556 * 17.12629 * 11 10 9 13 13 H 1.09002 * 109.15541 * 85.81691 * 12 11 10 14 14 C 1.46895 * 125.90078 * 172.48961 * 9 7 2 15 15 H 1.08998 * 109.93508 * 38.06807 * 14 9 7 16 16 C 1.52921 * 108.25959 * 276.33875 * 14 9 7 17 17 C 1.52944 * 109.79264 * 187.55796 * 16 14 9 18 18 C 1.51819 * 108.89327 * 65.45871 * 17 16 14 19 19 N 1.44187 * 111.76443 * 206.75201 * 12 11 10 20 20 C 1.34775 * 117.75913 * 266.47643 * 19 12 11 21 21 O 1.21281 * 119.99977 * 359.97438 * 20 19 12 22 22 C 1.50699 * 120.00163 * 180.02562 * 20 19 12 23 23 C 1.53003 * 109.47500 * 179.97438 * 22 20 19 24 24 H 1.09003 * 110.66319 * 307.93350 * 23 22 20 25 25 C 1.54219 * 110.61011 * 184.99948 * 23 22 20 26 26 C 1.51313 * 103.69609 * 241.56190 * 25 23 22 27 27 O 1.21226 * 125.39868 * 179.97438 * 26 25 23 28 28 N 1.33881 * 109.20590 * 359.91973 * 26 25 23 29 29 C 1.33872 * 114.47287 * 0.02562 * 28 26 25 30 30 O 1.21231 * 125.39457 * 180.02562 * 29 28 26 31 31 H 0.96995 * 119.99892 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.80671 * 63.42093 * 10 9 7 33 33 H 1.08998 * 109.80996 * 302.51646 * 10 9 7 34 34 H 1.08996 * 110.57201 * 258.56518 * 11 10 9 35 35 H 1.08998 * 110.57228 * 135.68868 * 11 10 9 36 36 H 1.09003 * 109.42045 * 307.65053 * 16 14 9 37 37 H 1.08997 * 109.41704 * 67.52476 * 16 14 9 38 38 H 1.08999 * 109.63087 * 185.69540 * 17 16 14 39 39 H 1.08995 * 109.63604 * 306.08958 * 17 16 14 40 40 H 1.08999 * 110.09579 * 186.42441 * 18 17 16 41 41 H 1.08999 * 108.13303 * 66.90301 * 18 17 16 42 42 H 1.09002 * 109.47316 * 59.99758 * 22 20 19 43 43 H 1.09005 * 109.47193 * 299.99720 * 22 20 19 44 44 H 1.08997 * 110.61175 * 122.96415 * 25 23 22 45 45 H 1.09005 * 110.60471 * 0.15428 * 25 23 22 46 46 H 0.97001 * 122.76536 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4122 0.5919 7 6 2.0103 -1.2020 0.0005 8 1 3.0856 -1.2048 0.1024 9 7 1.3318 -2.3845 -0.1283 10 6 -0.1293 -2.5354 -0.1325 11 6 -0.4447 -4.0405 -0.2249 12 6 0.8819 -4.7174 0.1699 13 1 0.9290 -4.8062 1.2552 14 6 1.9383 -3.7114 -0.2994 15 1 2.8385 -3.7900 0.3103 16 6 2.2544 -3.9061 -1.7828 17 6 2.7127 -5.3442 -2.0303 18 6 1.5553 -6.2847 -1.7464 19 7 1.0100 -6.0270 -0.4197 20 6 0.6026 -7.0856 0.3080 21 8 0.1472 -6.9183 1.4195 22 6 0.7141 -8.4775 -0.2588 23 6 0.1873 -9.4879 0.7623 24 1 0.6672 -9.3424 1.7301 25 6 0.4037 -10.9300 0.2604 26 6 -0.9992 -11.4873 0.1560 27 8 -1.2843 -12.6081 -0.2072 28 7 -1.8757 -10.5467 0.5296 29 6 -1.3204 -9.3835 0.8912 30 8 -1.9265 -8.4015 1.2627 31 1 -0.4850 0.8400 0.0004 32 1 -0.5518 -2.0160 -0.9925 33 1 -0.5455 -2.1267 0.7883 34 1 -0.7247 -4.3113 -1.2428 35 1 -1.2353 -4.3098 0.4755 36 1 1.3608 -3.7040 -2.3734 37 1 3.0470 -3.2184 -2.0777 38 1 3.0333 -5.4532 -3.0663 39 1 3.5408 -5.5845 -1.3636 40 1 1.8908 -7.3201 -1.8062 41 1 0.7840 -6.1094 -2.4963 42 1 1.7585 -8.6969 -0.4809 43 1 0.1260 -8.5452 -1.1741 44 1 0.9913 -11.5020 0.9784 45 1 0.8891 -10.9277 -0.7156 46 1 -2.8341 -10.6957 0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049933338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:33 Heat of formation + Delta-G solvation = -68.220917 kcal Electronic energy + Delta-G solvation = -30086.065238 eV Core-core repulsion = 25976.653223 eV Total energy + Delta-G solvation = -4109.412015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14478 -40.43143 -38.87498 -37.93605 -36.14776 -35.44559 -33.91609 -32.60703 -32.27233 -29.65843 -28.74942 -28.15637 -25.62285 -24.39726 -24.31448 -22.19218 -21.96181 -21.39497 -20.22600 -19.74969 -18.25935 -18.03561 -17.26048 -17.00553 -16.88871 -16.43033 -15.73997 -15.58715 -14.91983 -14.75464 -14.46156 -14.36222 -14.23984 -14.08209 -13.85782 -13.54067 -13.17314 -13.07784 -13.00072 -12.48526 -12.33736 -12.00135 -11.91932 -11.68762 -11.43158 -11.06813 -10.97965 -10.93990 -10.76060 -10.67703 -10.58973 -10.47861 -10.22212 -10.08519 -10.05194 -9.65179 -9.55427 -9.48117 -8.58840 -8.27799 -6.85419 -5.72783 -3.07015 1.20728 2.41834 2.45290 2.74850 3.09176 3.39405 3.44656 3.46979 3.69128 3.83694 3.94815 4.25297 4.48066 4.54604 4.78721 4.84103 4.91728 5.05750 5.09501 5.17391 5.27401 5.41192 5.44292 5.46771 5.57109 5.65766 5.67163 5.69248 5.91516 5.98866 6.08652 6.24677 6.29943 6.31651 6.39679 6.59178 6.63292 6.75743 6.98730 7.00528 7.10890 7.53995 7.59093 7.59619 7.67239 7.83872 8.25193 8.36573 9.20295 9.81028 10.46779 11.38520 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027697 B = 0.002706 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.680418 B =10346.489367 C =10952.208460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.150 4.150 12 C 0.138 3.862 13 H 0.092 0.908 14 C 0.163 3.837 15 H 0.052 0.948 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.108 3.892 19 N -0.587 5.587 20 C 0.497 3.503 21 O -0.515 6.515 22 C -0.128 4.128 23 C -0.109 4.109 24 H 0.134 0.866 25 C -0.156 4.156 26 C 0.531 3.469 27 O -0.491 6.491 28 N -0.685 5.685 29 C 0.522 3.478 30 O -0.439 6.439 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -22.697 -3.952 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.189 4.189 12 C 0.033 3.967 13 H 0.110 0.890 14 C 0.054 3.946 15 H 0.070 0.930 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.015 4.015 19 N -0.320 5.320 20 C 0.283 3.717 21 O -0.390 6.390 22 C -0.168 4.168 23 C -0.131 4.131 24 H 0.152 0.848 25 C -0.196 4.196 26 C 0.319 3.681 27 O -0.363 6.363 28 N -0.351 5.351 29 C 0.307 3.693 30 O -0.305 6.305 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.538 -22.297 -3.300 22.682 hybrid contribution -0.126 0.894 -0.238 0.934 sum 2.412 -21.403 -3.538 21.827 Atomic orbital electron populations 1.69994 1.04924 1.25095 1.56358 1.24838 0.95674 0.97665 1.01964 0.86126 0.78699 0.83652 0.77450 1.21643 1.21768 1.20615 1.18993 0.90967 0.82203 1.43545 0.90416 1.44327 1.01614 1.00725 1.85227 1.21067 0.84423 0.88059 1.01198 1.22974 0.96696 0.99089 1.00153 1.21094 0.96588 0.80611 0.98391 0.88991 1.20748 0.94141 0.86322 0.93422 0.92988 1.22117 1.01477 0.93739 0.99750 1.21619 0.97313 0.96768 1.01412 1.21253 0.96723 0.99309 0.84171 1.47025 1.61906 1.06605 1.16451 1.20419 0.78873 0.86346 0.86068 1.90785 1.43142 1.85742 1.19289 1.21683 1.04131 0.92232 0.98740 1.21917 0.93553 0.94255 1.03337 0.84795 1.22609 0.95256 0.95372 1.06327 1.20762 0.89037 0.83950 0.74329 1.90818 1.83608 1.18278 1.43628 1.44878 1.12609 1.15656 1.62007 1.20811 0.91102 0.81614 0.75775 1.90931 1.68930 1.31221 1.39463 0.93706 0.93834 0.93495 0.92768 0.91907 0.92019 0.91807 0.91079 0.91788 0.90374 0.92239 0.86891 0.88470 0.85754 0.85846 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.34 55.49 0.57 -26.33 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 9 N -0.60 -14.83 2.93 -164.32 -0.48 -15.31 16 10 C 0.18 4.38 5.38 -3.28 -0.02 4.36 16 11 C -0.15 -3.02 6.39 -25.62 -0.16 -3.18 16 12 C 0.14 2.54 2.77 -68.48 -0.19 2.35 16 13 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16 14 C 0.16 3.23 3.23 -67.63 -0.22 3.01 16 15 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.13 -2.19 5.32 -26.80 -0.14 -2.33 16 17 C -0.13 -1.54 6.04 -27.36 -0.17 -1.70 16 18 C 0.11 1.13 5.99 -5.06 -0.03 1.10 16 19 N -0.59 -8.28 2.81 -168.31 -0.47 -8.75 16 20 C 0.50 6.66 7.29 -10.99 -0.08 6.58 16 21 O -0.51 -9.09 13.27 -15.46 -0.21 -9.30 16 22 C -0.13 -0.94 3.34 -27.88 -0.09 -1.03 16 23 C -0.11 -0.77 2.69 -90.65 -0.24 -1.01 16 24 H 0.13 0.98 7.89 -51.93 -0.41 0.57 16 25 C -0.16 -0.64 6.66 -26.94 -0.18 -0.82 16 26 C 0.53 3.95 8.55 -11.08 -0.09 3.85 16 27 O -0.49 -5.27 18.02 5.60 0.10 -5.17 16 28 N -0.68 -5.34 5.48 -11.27 -0.06 -5.40 16 29 C 0.52 5.36 7.74 -10.91 -0.08 5.28 16 30 O -0.44 -6.77 15.94 -15.42 -0.25 -7.02 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 1.18 7.41 -51.93 -0.38 0.79 16 33 H 0.05 1.30 7.48 -51.93 -0.39 0.91 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.13 7.99 -51.93 -0.41 0.71 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.51 5.81 -51.93 -0.30 0.21 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.45 7.31 -51.93 -0.38 0.08 16 43 H 0.10 0.59 8.02 -51.93 -0.42 0.17 16 44 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.12 0.24 7.74 -51.93 -0.40 -0.16 16 46 H 0.41 2.79 8.96 -40.82 -0.37 2.43 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -36.28 363.80 -9.05 -45.32 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.76 Total: -0.25 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.95 Total: 9.82 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.44 Total: -55.79 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.35 Total: -21.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.28 -9.05 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049933338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.898 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds