Wall clock time and date at job start Tue Mar 31 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48501 * 109.46890 * 274.98703 * 3 2 1 5 5 H 1.48496 * 109.47385 * 34.98642 * 3 2 1 6 6 H 1.48495 * 109.47052 * 154.99006 * 3 2 1 7 7 C 1.38805 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00272 * 186.25181 * 7 2 1 9 9 N 1.36939 * 119.99827 * 6.26327 * 7 2 1 10 10 C 1.46890 * 125.58117 * 353.16903 * 9 7 2 11 11 C 1.54050 * 107.70924 * 182.96856 * 10 9 7 12 12 C 1.54076 * 103.74556 * 17.12629 * 11 10 9 13 13 H 1.09002 * 109.15541 * 85.81691 * 12 11 10 14 14 C 1.46895 * 125.90078 * 172.48961 * 9 7 2 15 15 H 1.08998 * 109.93508 * 38.06807 * 14 9 7 16 16 C 1.52921 * 108.25959 * 276.33875 * 14 9 7 17 17 C 1.52944 * 109.79264 * 187.55796 * 16 14 9 18 18 C 1.51819 * 108.89327 * 65.45871 * 17 16 14 19 19 N 1.44187 * 111.76443 * 206.75201 * 12 11 10 20 20 C 1.34775 * 117.75913 * 266.47643 * 19 12 11 21 21 O 1.21281 * 119.99977 * 359.97438 * 20 19 12 22 22 C 1.50699 * 120.00163 * 180.02562 * 20 19 12 23 23 C 1.53003 * 109.47500 * 179.97438 * 22 20 19 24 24 H 1.09003 * 110.66319 * 307.93350 * 23 22 20 25 25 C 1.54219 * 110.61011 * 184.99948 * 23 22 20 26 26 C 1.51313 * 103.69609 * 241.56190 * 25 23 22 27 27 O 1.21226 * 125.39868 * 179.97438 * 26 25 23 28 28 N 1.33881 * 109.20590 * 359.91973 * 26 25 23 29 29 C 1.33872 * 114.47287 * 0.02562 * 28 26 25 30 30 O 1.21231 * 125.39457 * 180.02562 * 29 28 26 31 31 H 0.96995 * 119.99892 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.80671 * 63.42093 * 10 9 7 33 33 H 1.08998 * 109.80996 * 302.51646 * 10 9 7 34 34 H 1.08996 * 110.57201 * 258.56518 * 11 10 9 35 35 H 1.08998 * 110.57228 * 135.68868 * 11 10 9 36 36 H 1.09003 * 109.42045 * 307.65053 * 16 14 9 37 37 H 1.08997 * 109.41704 * 67.52476 * 16 14 9 38 38 H 1.08999 * 109.63087 * 185.69540 * 17 16 14 39 39 H 1.08995 * 109.63604 * 306.08958 * 17 16 14 40 40 H 1.08999 * 110.09579 * 186.42441 * 18 17 16 41 41 H 1.08999 * 108.13303 * 66.90301 * 18 17 16 42 42 H 1.09002 * 109.47316 * 59.99758 * 22 20 19 43 43 H 1.09005 * 109.47193 * 299.99720 * 22 20 19 44 44 H 1.08997 * 110.61175 * 122.96415 * 25 23 22 45 45 H 1.09005 * 110.60471 * 0.15428 * 25 23 22 46 46 H 0.97001 * 122.76536 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4122 0.5919 7 6 2.0103 -1.2020 0.0005 8 1 3.0856 -1.2048 0.1024 9 7 1.3318 -2.3845 -0.1283 10 6 -0.1293 -2.5354 -0.1325 11 6 -0.4447 -4.0405 -0.2249 12 6 0.8819 -4.7174 0.1699 13 1 0.9290 -4.8062 1.2552 14 6 1.9383 -3.7114 -0.2994 15 1 2.8385 -3.7900 0.3103 16 6 2.2544 -3.9061 -1.7828 17 6 2.7127 -5.3442 -2.0303 18 6 1.5553 -6.2847 -1.7464 19 7 1.0100 -6.0270 -0.4197 20 6 0.6026 -7.0856 0.3080 21 8 0.1472 -6.9183 1.4195 22 6 0.7141 -8.4775 -0.2588 23 6 0.1873 -9.4879 0.7623 24 1 0.6672 -9.3424 1.7301 25 6 0.4037 -10.9300 0.2604 26 6 -0.9992 -11.4873 0.1560 27 8 -1.2843 -12.6081 -0.2072 28 7 -1.8757 -10.5467 0.5296 29 6 -1.3204 -9.3835 0.8912 30 8 -1.9265 -8.4015 1.2627 31 1 -0.4850 0.8400 0.0004 32 1 -0.5518 -2.0160 -0.9925 33 1 -0.5455 -2.1267 0.7883 34 1 -0.7247 -4.3113 -1.2428 35 1 -1.2353 -4.3098 0.4755 36 1 1.3608 -3.7040 -2.3734 37 1 3.0470 -3.2184 -2.0777 38 1 3.0333 -5.4532 -3.0663 39 1 3.5408 -5.5845 -1.3636 40 1 1.8908 -7.3201 -1.8062 41 1 0.7840 -6.1094 -2.4963 42 1 1.7585 -8.6969 -0.4809 43 1 0.1260 -8.5452 -1.1741 44 1 0.9913 -11.5020 0.9784 45 1 0.8891 -10.9277 -0.7156 46 1 -2.8341 -10.6957 0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049933338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:32 Heat of formation + Delta-G solvation = -95.040382 kcal Electronic energy + Delta-G solvation = -30087.228218 eV Core-core repulsion = 25976.653223 eV Total energy + Delta-G solvation = -4110.574994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.81257 -41.61615 -39.75438 -39.22397 -36.92241 -36.84902 -34.67913 -34.07975 -33.83307 -31.13580 -30.13062 -29.27944 -26.66280 -26.06334 -25.50547 -23.26070 -22.72206 -22.31851 -21.89925 -20.85606 -19.39414 -18.93789 -18.74273 -18.18835 -17.76569 -17.16053 -16.79713 -16.71187 -16.53963 -16.03264 -15.74586 -15.30829 -15.23720 -15.10222 -14.93620 -14.79145 -14.31884 -14.16456 -13.86225 -13.78658 -13.54019 -13.38837 -13.12475 -12.98215 -12.80760 -12.62489 -12.32560 -12.29176 -12.07851 -12.03456 -11.83447 -11.64681 -11.55795 -11.51748 -11.35438 -11.16346 -10.97946 -10.70923 -10.59418 -9.49096 -8.90870 -7.86501 -5.22919 0.54013 1.44880 1.46955 1.56009 1.77425 1.78687 1.85790 2.06699 2.49519 3.18172 3.27415 3.30914 3.37279 3.60427 3.73188 3.79355 3.89071 4.03177 4.08116 4.17023 4.23416 4.36173 4.38966 4.58609 4.62082 4.63242 4.67821 4.75591 4.87903 4.89969 4.92898 4.97419 5.01070 5.09558 5.12130 5.26254 5.41523 5.43782 5.54792 5.64979 5.70004 5.71742 5.78437 6.18392 6.36728 6.54408 6.91924 7.06907 7.35664 7.75336 8.40879 9.24358 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027697 B = 0.002706 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.680418 B =10346.489367 C =10952.208460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.236 4.236 8 H 0.086 0.914 9 N -0.616 5.616 10 C 0.192 3.808 11 C -0.134 4.134 12 C 0.158 3.842 13 H 0.060 0.940 14 C 0.158 3.842 15 H 0.048 0.952 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.101 3.899 19 N -0.591 5.591 20 C 0.487 3.513 21 O -0.566 6.566 22 C -0.119 4.119 23 C -0.104 4.104 24 H 0.133 0.867 25 C -0.134 4.134 26 C 0.533 3.467 27 O -0.525 6.525 28 N -0.683 5.683 29 C 0.519 3.481 30 O -0.504 6.504 31 H 0.246 0.754 32 H 0.011 0.989 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.167 0.833 43 H 0.122 0.878 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -26.194 -6.165 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.066 3.934 11 C -0.174 4.174 12 C 0.051 3.949 13 H 0.078 0.922 14 C 0.051 3.949 15 H 0.066 0.934 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.020 4.020 19 N -0.323 5.323 20 C 0.277 3.723 21 O -0.444 6.444 22 C -0.158 4.158 23 C -0.126 4.126 24 H 0.150 0.850 25 C -0.172 4.172 26 C 0.323 3.677 27 O -0.400 6.400 28 N -0.348 5.348 29 C 0.307 3.693 30 O -0.374 6.374 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.082 0.918 42 H 0.185 0.815 43 H 0.140 0.860 44 H 0.171 0.829 45 H 0.180 0.820 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.832 -25.881 -5.555 27.105 hybrid contribution -1.175 1.931 0.510 2.317 sum 4.657 -23.950 -5.045 24.914 Atomic orbital electron populations 1.70228 1.06541 1.25258 1.58107 1.25716 0.96523 1.01203 1.02560 0.85045 0.77853 0.79053 0.77307 1.21201 1.22532 1.18953 1.19398 0.91495 0.83333 1.42208 0.89651 1.44595 1.01796 1.02296 1.85372 1.20690 0.84670 0.90589 0.97432 1.22744 0.97769 0.96092 1.00761 1.20488 0.94389 0.83035 0.96966 0.92174 1.20982 0.93944 0.84205 0.95788 0.93362 1.21907 1.00277 0.97854 0.96166 1.21592 0.98036 0.92546 1.03823 1.21674 0.96264 1.02212 0.81811 1.47110 1.62493 1.04649 1.18089 1.21608 0.77085 0.88311 0.85326 1.90782 1.45037 1.86718 1.21899 1.21862 1.07861 0.87227 0.98889 1.21968 0.90467 0.96358 1.03759 0.84956 1.22702 0.92989 0.92497 1.09037 1.21376 0.90275 0.83104 0.72904 1.90818 1.84297 1.19637 1.45209 1.44964 1.13097 1.15407 1.61297 1.21493 0.92804 0.80927 0.74099 1.90911 1.70512 1.33553 1.42460 0.94485 0.97093 0.98025 0.91151 0.93068 0.93926 0.93234 0.87664 0.90669 0.84458 0.91777 0.81513 0.85987 0.82943 0.81953 0.74765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 10.34 21.65 0.22 -58.97 16 2 C -0.07 -3.89 5.48 84.86 0.47 -3.43 16 3 Si 0.98 46.34 29.56 68.60 2.03 48.37 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 8 H 0.09 4.55 7.84 -2.91 -0.02 4.53 16 9 N -0.62 -32.16 2.93 -673.80 -1.97 -34.13 16 10 C 0.19 10.20 5.38 86.66 0.47 10.66 16 11 C -0.13 -5.69 6.39 31.31 0.20 -5.49 16 12 C 0.16 5.90 2.77 45.87 0.13 6.03 16 13 H 0.06 2.63 7.10 -2.39 -0.02 2.61 16 14 C 0.16 6.34 3.23 44.97 0.15 6.49 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.12 -3.94 5.32 30.55 0.16 -3.77 16 17 C -0.12 -2.24 6.04 30.19 0.18 -2.06 16 18 C 0.10 1.56 5.99 86.14 0.52 2.08 16 19 N -0.59 -15.17 2.81 -804.81 -2.27 -17.43 16 20 C 0.49 11.81 7.29 87.66 0.64 12.45 16 21 O -0.57 -20.08 13.27 17.07 0.23 -19.86 16 22 C -0.12 -1.06 3.34 29.85 0.10 -0.96 16 23 C -0.10 -1.05 2.69 -10.81 -0.03 -1.08 16 24 H 0.13 1.49 7.89 -2.39 -0.02 1.48 16 25 C -0.13 -0.32 6.66 30.46 0.20 -0.12 16 26 C 0.53 6.21 8.55 87.99 0.75 6.96 16 27 O -0.52 -9.98 18.02 -2.86 -0.05 -10.03 16 28 N -0.68 -9.64 5.48 -427.41 -2.34 -11.99 16 29 C 0.52 10.02 7.74 88.11 0.68 10.70 16 30 O -0.50 -16.02 15.94 17.22 0.27 -15.74 16 31 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.01 0.64 7.41 -2.39 -0.02 0.62 16 33 H 0.00 0.09 7.48 -2.39 -0.02 0.07 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.53 7.99 -2.39 -0.02 1.51 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.14 0.58 5.81 -2.39 -0.01 0.57 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.17 -0.19 7.31 -2.39 -0.02 -0.21 16 43 H 0.12 0.63 8.02 -2.38 -0.02 0.61 16 44 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.16 -0.72 7.74 -2.38 -0.02 -0.74 16 46 H 0.41 5.50 8.96 -92.71 -0.83 4.67 16 Total: -1.00 -90.99 363.80 1.78 -89.21 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.18 Total: 4.51 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 5.47 Total: 26.05 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -6.35 Total: -122.51 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: 0.45 Total: -45.63 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -90.99 1.78 -89.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049933338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.826 kcal (2) G-P(sol) polarization free energy of solvation -90.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds