Wall clock time and date at job start Tue Mar 31 2020 18:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48500 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47396 * 299.99918 * 3 2 1 6 6 H 1.48500 * 109.47721 * 60.00054 * 3 2 1 7 7 C 1.38811 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.47102 * 125.64842 * 179.97438 * 9 7 2 11 11 C 1.55027 * 107.12994 * 180.18196 * 10 9 7 12 12 H 1.08998 * 112.15631 * 216.41527 * 11 10 9 13 13 C 1.52953 * 107.59858 * 92.90272 * 11 10 9 14 14 C 1.52727 * 110.88061 * 194.02879 * 13 11 10 15 15 C 1.53864 * 107.82669 * 64.65843 * 14 13 11 16 16 N 1.46789 * 107.09830 * 300.64392 * 15 14 13 17 17 C 1.34779 * 119.52311 * 233.13826 * 16 15 14 18 18 O 1.21275 * 119.99861 * 179.72222 * 17 16 15 19 19 C 1.50698 * 119.99843 * 359.72814 * 17 16 15 20 20 C 1.52998 * 109.46964 * 179.97438 * 19 17 16 21 21 H 1.09008 * 110.54135 * 52.15454 * 20 19 17 22 22 C 1.54227 * 110.60328 * 174.99716 * 20 19 17 23 23 C 1.51314 * 103.55414 * 118.52080 * 22 20 19 24 24 O 1.21231 * 125.39571 * 180.02562 * 23 22 20 25 25 N 1.33881 * 109.20813 * 359.97438 * 23 22 20 26 26 C 1.33879 * 114.47148 * 0.02562 * 25 23 22 27 27 O 1.21224 * 125.39312 * 180.02562 * 26 25 23 28 28 C 1.45026 * 120.95432 * 52.85925 * 16 15 14 29 29 H 1.09002 * 109.86513 * 192.55706 * 28 16 15 30 30 C 1.47678 * 125.64905 * 0.02719 * 9 7 2 31 31 H 0.97002 * 119.99725 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.90034 * 60.80944 * 10 9 7 33 33 H 1.09002 * 110.06000 * 299.64816 * 10 9 7 34 34 H 1.08997 * 109.20430 * 314.39419 * 13 11 10 35 35 H 1.09004 * 109.19695 * 73.67082 * 13 11 10 36 36 H 1.09001 * 109.67911 * 183.56938 * 14 13 11 37 37 H 1.08996 * 109.68473 * 304.08349 * 14 13 11 38 38 H 1.08998 * 109.32813 * 181.67625 * 15 14 13 39 39 H 1.09007 * 110.79376 * 60.42960 * 15 14 13 40 40 H 1.08998 * 109.47187 * 299.99673 * 19 17 16 41 41 H 1.09000 * 109.47020 * 59.99585 * 19 17 16 42 42 H 1.09011 * 110.60778 * 237.03268 * 22 20 19 43 43 H 1.08998 * 110.61027 * 359.84279 * 22 20 19 44 44 H 0.96994 * 122.76324 * 179.97438 * 25 23 22 45 45 H 1.08999 * 110.45065 * 84.72158 * 30 9 7 46 46 H 1.08998 * 110.44724 * 322.17925 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.9320 -3.7282 0.0017 11 6 0.7706 -4.7550 -0.0016 12 1 0.9994 -5.6364 0.5974 13 6 0.4761 -5.1154 -1.4586 14 6 -0.8611 -5.8433 -1.5798 15 6 -1.9705 -4.8637 -1.1592 16 7 -1.6887 -4.4604 0.2238 17 6 -2.6486 -4.5872 1.1613 18 8 -2.4235 -4.2615 2.3076 19 6 -4.0016 -5.1339 0.7852 20 6 -4.8979 -5.1741 2.0245 21 1 -4.9121 -4.2022 2.5180 22 6 -6.3276 -5.6118 1.6464 23 6 -6.5249 -6.8923 2.4279 24 8 -7.5276 -7.5737 2.4179 25 7 -5.4162 -7.1543 3.1312 26 6 -4.4374 -6.2536 2.9796 27 8 -3.3537 -6.2965 3.5211 28 6 -0.3903 -3.9332 0.5972 29 1 -0.3013 -3.9026 1.6832 30 6 -0.1441 -2.5333 0.0017 31 1 -0.4850 0.8401 0.0004 32 1 2.5411 -3.8597 0.8961 33 1 2.5469 -3.8604 -0.8885 34 1 0.4426 -4.2029 -2.0539 35 1 1.2703 -5.7596 -1.8361 36 1 -1.0216 -6.1463 -2.6145 37 1 -0.8601 -6.7227 -0.9358 38 1 -2.9352 -5.3686 -1.2081 39 1 -1.9779 -3.9864 -1.8062 40 1 -4.4551 -4.4930 0.0291 41 1 -3.8881 -6.1420 0.3864 42 1 -7.0534 -4.8589 1.9542 43 1 -6.4010 -5.7982 0.5750 44 1 -5.3296 -7.9322 3.7041 45 1 -0.5323 -2.4782 -1.0153 46 1 -0.6024 -1.7674 0.6272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050221501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:28 Heat of formation + Delta-G solvation = -67.681831 kcal Electronic energy + Delta-G solvation = -30239.599987 eV Core-core repulsion = 26130.211349 eV Total energy + Delta-G solvation = -4109.388638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.08334 -40.22422 -38.82541 -37.88852 -36.08051 -35.28203 -33.79703 -32.86132 -31.87791 -29.70713 -28.86684 -27.20092 -25.53612 -25.32128 -23.77381 -22.16696 -21.98509 -21.33019 -20.22173 -19.68179 -18.21363 -17.98661 -17.14978 -16.92366 -16.81981 -16.37179 -15.63711 -15.41198 -14.97664 -14.73436 -14.38537 -14.27873 -14.12512 -13.98435 -13.82150 -13.42603 -13.22454 -12.98554 -12.83784 -12.41693 -12.26244 -12.13864 -11.87640 -11.67300 -11.47289 -11.11051 -11.04776 -10.90138 -10.85279 -10.67668 -10.53860 -10.28006 -10.23134 -10.14260 -9.86242 -9.74858 -9.65802 -9.36217 -8.64005 -8.08791 -6.82595 -5.65129 -3.06677 1.26747 2.48073 2.51776 2.93003 3.23077 3.40410 3.46026 3.48395 3.78528 3.93091 4.04885 4.35967 4.49840 4.66892 4.82191 4.96056 4.99754 5.09398 5.13409 5.19616 5.30688 5.35902 5.47412 5.52726 5.55566 5.61221 5.68937 5.72275 5.91421 5.95236 6.07651 6.12238 6.22871 6.30279 6.37476 6.43414 6.65259 6.70839 6.92922 6.98504 7.04908 7.43382 7.62978 7.64994 7.78704 7.88090 8.34300 8.53691 9.21216 9.82447 10.46560 11.38969 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003083 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.656955 B = 9079.916407 C = 9784.139847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.109 4.109 12 H 0.074 0.926 13 C -0.110 4.110 14 C -0.132 4.132 15 C 0.105 3.895 16 N -0.590 5.590 17 C 0.502 3.498 18 O -0.516 6.516 19 C -0.127 4.127 20 C -0.110 4.110 21 H 0.136 0.864 22 C -0.156 4.156 23 C 0.532 3.468 24 O -0.492 6.492 25 N -0.685 5.685 26 C 0.524 3.476 27 O -0.441 6.441 28 C 0.118 3.882 29 H 0.097 0.903 30 C 0.158 3.842 31 H 0.251 0.749 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.413 0.587 45 H 0.014 0.986 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 -14.484 -2.311 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.013 3.987 11 C -0.128 4.128 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.170 4.170 15 C -0.018 4.018 16 N -0.322 5.322 17 C 0.288 3.712 18 O -0.391 6.391 19 C -0.167 4.167 20 C -0.132 4.132 21 H 0.154 0.846 22 C -0.195 4.195 23 C 0.320 3.680 24 O -0.364 6.364 25 N -0.352 5.352 26 C 0.309 3.691 27 O -0.308 6.308 28 C 0.013 3.987 29 H 0.115 0.885 30 C 0.032 3.968 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.244 -14.294 -1.510 18.882 hybrid contribution 0.565 0.393 0.092 0.694 sum -11.679 -13.901 -1.418 18.211 Atomic orbital electron populations 1.69827 1.04854 1.24617 1.57581 1.24792 0.95733 0.97716 1.02402 0.86001 0.78657 0.83640 0.77210 1.20548 1.21820 1.21727 1.19116 0.90505 0.82305 1.43048 0.90342 1.44442 1.01627 0.99866 1.86936 1.21505 0.93513 0.85616 0.98035 1.22421 0.96758 0.97722 0.95948 0.90766 1.21479 0.95989 1.00569 0.96712 1.21953 0.95928 0.98045 1.01070 1.21937 0.98195 0.98350 0.83324 1.47373 1.13197 1.63193 1.08435 1.20293 0.85838 0.79386 0.85633 1.90782 1.80829 1.48611 1.18866 1.21650 0.93988 1.03746 0.97325 1.21864 0.93692 1.01222 0.96410 0.84637 1.22615 0.97620 0.96029 1.03267 1.20784 0.81543 0.87076 0.78634 1.90813 1.29135 1.53609 1.62891 1.44891 1.17283 1.27721 1.45290 1.20728 0.83457 0.82914 0.81966 1.90911 1.20105 1.73824 1.45935 1.22032 0.79767 0.95941 1.00915 0.88522 1.21966 0.84841 0.91657 0.98367 0.93833 0.95932 0.95581 0.90879 0.92442 0.91207 0.91742 0.90438 0.90444 0.86887 0.88686 0.85710 0.85813 0.74790 0.96796 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.10 55.49 0.56 -26.19 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.34 3.40 -169.87 -0.58 -15.92 16 10 C 0.14 2.91 6.63 -2.64 -0.02 2.89 16 11 C -0.11 -1.90 3.56 -88.88 -0.32 -2.22 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.60 4.66 -26.90 -0.13 -1.73 16 14 C -0.13 -1.49 6.14 -26.42 -0.16 -1.65 16 15 C 0.10 1.23 6.08 -3.43 -0.02 1.21 16 16 N -0.59 -9.24 2.72 -164.97 -0.45 -9.69 16 17 C 0.50 7.66 7.34 -10.99 -0.08 7.58 16 18 O -0.52 -10.17 13.28 -15.62 -0.21 -10.38 16 19 C -0.13 -1.13 3.32 -27.88 -0.09 -1.22 16 20 C -0.11 -0.94 2.68 -90.83 -0.24 -1.18 16 21 H 0.14 1.25 7.89 -51.92 -0.41 0.84 16 22 C -0.16 -0.82 6.67 -26.94 -0.18 -1.00 16 23 C 0.53 4.35 8.55 -11.08 -0.09 4.26 16 24 O -0.49 -5.59 18.02 5.60 0.10 -5.49 16 25 N -0.69 -5.76 5.48 -11.39 -0.06 -5.82 16 26 C 0.52 5.81 7.72 -11.09 -0.09 5.72 16 27 O -0.44 -7.07 15.90 -15.58 -0.25 -7.32 16 28 C 0.12 2.32 3.04 -67.45 -0.21 2.12 16 29 H 0.10 2.20 6.95 -51.93 -0.36 1.84 16 30 C 0.16 3.78 5.06 -2.82 -0.01 3.76 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.53 7.77 -51.93 -0.40 0.13 16 34 H 0.07 1.24 7.25 -51.93 -0.38 0.86 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.61 5.81 -51.93 -0.30 0.31 16 39 H 0.08 0.98 7.60 -51.93 -0.39 0.59 16 40 H 0.11 0.70 7.94 -51.93 -0.41 0.29 16 41 H 0.09 0.66 7.58 -51.93 -0.39 0.27 16 42 H 0.12 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.12 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 45 H 0.01 0.35 6.94 -51.93 -0.36 -0.01 16 46 H 0.11 2.97 5.94 -51.93 -0.31 2.66 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -36.57 360.37 -8.94 -45.50 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.57 Total: 0.96 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -1.89 Total: 11.82 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.53 Total: -57.62 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.35 Total: -23.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.57 -8.94 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050221501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds