Wall clock time and date at job start Tue Mar 31 2020 18:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48500 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47396 * 299.99918 * 3 2 1 6 6 H 1.48500 * 109.47721 * 60.00054 * 3 2 1 7 7 C 1.38811 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.47102 * 125.64842 * 179.97438 * 9 7 2 11 11 C 1.55027 * 107.12994 * 180.18196 * 10 9 7 12 12 H 1.08998 * 112.15631 * 216.41527 * 11 10 9 13 13 C 1.52953 * 107.59858 * 92.90272 * 11 10 9 14 14 C 1.52727 * 110.88061 * 194.02879 * 13 11 10 15 15 C 1.53864 * 107.82669 * 64.65843 * 14 13 11 16 16 N 1.46789 * 107.09830 * 300.64392 * 15 14 13 17 17 C 1.34779 * 119.52311 * 233.13826 * 16 15 14 18 18 O 1.21275 * 119.99861 * 179.72222 * 17 16 15 19 19 C 1.50698 * 119.99843 * 359.72814 * 17 16 15 20 20 C 1.52998 * 109.46964 * 179.97438 * 19 17 16 21 21 H 1.09008 * 110.54135 * 52.15454 * 20 19 17 22 22 C 1.54227 * 110.60328 * 174.99716 * 20 19 17 23 23 C 1.51314 * 103.55414 * 118.52080 * 22 20 19 24 24 O 1.21231 * 125.39571 * 180.02562 * 23 22 20 25 25 N 1.33881 * 109.20813 * 359.97438 * 23 22 20 26 26 C 1.33879 * 114.47148 * 0.02562 * 25 23 22 27 27 O 1.21224 * 125.39312 * 180.02562 * 26 25 23 28 28 C 1.45026 * 120.95432 * 52.85925 * 16 15 14 29 29 H 1.09002 * 109.86513 * 192.55706 * 28 16 15 30 30 C 1.47678 * 125.64905 * 0.02719 * 9 7 2 31 31 H 0.97002 * 119.99725 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.90034 * 60.80944 * 10 9 7 33 33 H 1.09002 * 110.06000 * 299.64816 * 10 9 7 34 34 H 1.08997 * 109.20430 * 314.39419 * 13 11 10 35 35 H 1.09004 * 109.19695 * 73.67082 * 13 11 10 36 36 H 1.09001 * 109.67911 * 183.56938 * 14 13 11 37 37 H 1.08996 * 109.68473 * 304.08349 * 14 13 11 38 38 H 1.08998 * 109.32813 * 181.67625 * 15 14 13 39 39 H 1.09007 * 110.79376 * 60.42960 * 15 14 13 40 40 H 1.08998 * 109.47187 * 299.99673 * 19 17 16 41 41 H 1.09000 * 109.47020 * 59.99585 * 19 17 16 42 42 H 1.09011 * 110.60778 * 237.03268 * 22 20 19 43 43 H 1.08998 * 110.61027 * 359.84279 * 22 20 19 44 44 H 0.96994 * 122.76324 * 179.97438 * 25 23 22 45 45 H 1.08999 * 110.45065 * 84.72158 * 30 9 7 46 46 H 1.08998 * 110.44724 * 322.17925 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.9320 -3.7282 0.0017 11 6 0.7706 -4.7550 -0.0016 12 1 0.9994 -5.6364 0.5974 13 6 0.4761 -5.1154 -1.4586 14 6 -0.8611 -5.8433 -1.5798 15 6 -1.9705 -4.8637 -1.1592 16 7 -1.6887 -4.4604 0.2238 17 6 -2.6486 -4.5872 1.1613 18 8 -2.4235 -4.2615 2.3076 19 6 -4.0016 -5.1339 0.7852 20 6 -4.8979 -5.1741 2.0245 21 1 -4.9121 -4.2022 2.5180 22 6 -6.3276 -5.6118 1.6464 23 6 -6.5249 -6.8923 2.4279 24 8 -7.5276 -7.5737 2.4179 25 7 -5.4162 -7.1543 3.1312 26 6 -4.4374 -6.2536 2.9796 27 8 -3.3537 -6.2965 3.5211 28 6 -0.3903 -3.9332 0.5972 29 1 -0.3013 -3.9026 1.6832 30 6 -0.1441 -2.5333 0.0017 31 1 -0.4850 0.8401 0.0004 32 1 2.5411 -3.8597 0.8961 33 1 2.5469 -3.8604 -0.8885 34 1 0.4426 -4.2029 -2.0539 35 1 1.2703 -5.7596 -1.8361 36 1 -1.0216 -6.1463 -2.6145 37 1 -0.8601 -6.7227 -0.9358 38 1 -2.9352 -5.3686 -1.2081 39 1 -1.9779 -3.9864 -1.8062 40 1 -4.4551 -4.4930 0.0291 41 1 -3.8881 -6.1420 0.3864 42 1 -7.0534 -4.8589 1.9542 43 1 -6.4010 -5.7982 0.5750 44 1 -5.3296 -7.9322 3.7041 45 1 -0.5323 -2.4782 -1.0153 46 1 -0.6024 -1.7674 0.6272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050221501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:27 Heat of formation + Delta-G solvation = -94.653105 kcal Electronic energy + Delta-G solvation = -30240.769549 eV Core-core repulsion = 26130.211349 eV Total energy + Delta-G solvation = -4110.558201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.83880 -41.49315 -39.76689 -39.20316 -36.93562 -36.78839 -34.69673 -34.33401 -33.37659 -31.26204 -29.92628 -28.66045 -27.15762 -26.23577 -25.25264 -23.32408 -22.74297 -22.33730 -21.81885 -20.83233 -19.31528 -18.94301 -18.89176 -18.16915 -17.72832 -17.24209 -16.92733 -16.57389 -16.45308 -15.97042 -15.67715 -15.32924 -15.13823 -15.09593 -14.92100 -14.64453 -14.45671 -14.15607 -13.89454 -13.74485 -13.58800 -13.37656 -13.06864 -13.06706 -12.94985 -12.78090 -12.34846 -12.13660 -12.07872 -12.04218 -11.76666 -11.66753 -11.56418 -11.42706 -11.36735 -11.14167 -10.99680 -10.74477 -10.59506 -9.44932 -8.87415 -7.78457 -5.23278 0.51697 1.44740 1.46654 1.56624 1.75439 1.80103 1.84170 2.10329 2.49121 3.16673 3.25754 3.31413 3.35800 3.66630 3.70279 3.74901 3.87839 4.00624 4.05092 4.14049 4.23682 4.30439 4.51710 4.57903 4.59676 4.62386 4.68303 4.75983 4.86547 4.87122 4.93693 4.97395 4.98529 5.08695 5.13111 5.19676 5.32152 5.43254 5.52039 5.55616 5.66974 5.70900 5.85896 6.26458 6.33971 6.61903 6.90722 7.07958 7.38154 7.75327 8.39384 9.23266 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003083 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.656955 B = 9079.916407 C = 9784.139847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.133 3.867 11 C -0.096 4.096 12 H 0.090 0.910 13 C -0.106 4.106 14 C -0.123 4.123 15 C 0.097 3.903 16 N -0.595 5.595 17 C 0.489 3.511 18 O -0.572 6.572 19 C -0.117 4.117 20 C -0.108 4.108 21 H 0.125 0.875 22 C -0.135 4.135 23 C 0.536 3.464 24 O -0.522 6.522 25 N -0.679 5.679 26 C 0.524 3.476 27 O -0.501 6.501 28 C 0.133 3.867 29 H 0.054 0.946 30 C 0.173 3.827 31 H 0.246 0.754 32 H 0.015 0.985 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.415 0.585 45 H 0.002 0.998 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 -16.237 -4.788 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.007 3.993 11 C -0.115 4.115 12 H 0.109 0.891 13 C -0.144 4.144 14 C -0.161 4.161 15 C -0.024 4.024 16 N -0.326 5.326 17 C 0.278 3.722 18 O -0.450 6.450 19 C -0.157 4.157 20 C -0.130 4.130 21 H 0.143 0.857 22 C -0.173 4.173 23 C 0.326 3.674 24 O -0.397 6.397 25 N -0.344 5.344 26 C 0.312 3.688 27 O -0.371 6.371 28 C 0.027 3.973 29 H 0.073 0.927 30 C 0.047 3.953 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.180 0.820 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.007 -16.094 -4.027 21.712 hybrid contribution 1.131 0.927 0.929 1.732 sum -12.876 -15.167 -3.098 20.135 Atomic orbital electron populations 1.70105 1.06176 1.24853 1.58443 1.25653 0.96677 1.00995 1.02619 0.84970 0.78070 0.79290 0.76749 1.19148 1.21473 1.22139 1.19482 0.90981 0.83665 1.42699 0.90130 1.44738 1.02558 1.01008 1.86893 1.21709 0.94937 0.84704 0.97906 1.22380 0.93885 0.96740 0.98507 0.89142 1.21443 0.99234 1.00222 0.93484 1.21957 0.93131 0.97534 1.03503 1.22307 1.01152 0.98520 0.80391 1.47513 1.11646 1.62866 1.10602 1.21545 0.87710 0.78224 0.84693 1.90766 1.82039 1.50852 1.21386 1.21795 0.89693 1.05896 0.98297 1.21883 0.95648 0.99783 0.95660 0.85718 1.22690 0.95312 0.94423 1.04917 1.21248 0.80511 0.87521 0.78087 1.90816 1.30065 1.54865 1.63938 1.44890 1.17057 1.27412 1.45088 1.21210 0.82717 0.83445 0.81413 1.90893 1.22673 1.75245 1.48337 1.21368 0.83402 0.94352 0.98198 0.92739 1.21563 0.83995 0.93082 0.96642 0.94435 0.96674 0.94573 0.93633 0.90400 0.87680 0.90611 0.85167 0.91695 0.82758 0.85335 0.83264 0.82023 0.74516 0.98029 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.54 10.10 21.65 0.22 -57.32 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.80 10.28 84.03 0.86 -12.94 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -33.32 3.40 -691.33 -2.35 -35.67 16 10 C 0.13 5.69 6.63 86.96 0.58 6.26 16 11 C -0.10 -3.32 3.56 -9.67 -0.03 -3.36 16 12 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 13 C -0.11 -2.88 4.66 30.49 0.14 -2.73 16 14 C -0.12 -2.27 6.14 30.80 0.19 -2.08 16 15 C 0.10 1.94 6.08 86.62 0.53 2.46 16 16 N -0.59 -18.16 2.72 -794.23 -2.16 -20.33 16 17 C 0.49 14.56 7.34 87.66 0.64 15.20 16 18 O -0.57 -23.62 13.28 17.24 0.23 -23.39 16 19 C -0.12 -1.63 3.32 29.85 0.10 -1.53 16 20 C -0.11 -1.55 2.68 -10.93 -0.03 -1.58 16 21 H 0.12 2.16 7.89 -2.38 -0.02 2.14 16 22 C -0.13 -0.80 6.67 30.46 0.20 -0.59 16 23 C 0.54 7.22 8.55 87.99 0.75 7.97 16 24 O -0.52 -10.60 18.02 -2.88 -0.05 -10.66 16 25 N -0.68 -10.42 5.48 -427.79 -2.34 -12.77 16 26 C 0.52 11.20 7.72 87.99 0.68 11.88 16 27 O -0.50 -16.60 15.90 17.40 0.28 -16.33 16 28 C 0.13 5.45 3.04 46.09 0.14 5.59 16 29 H 0.05 2.67 6.95 -2.39 -0.02 2.66 16 30 C 0.17 8.78 5.06 86.53 0.44 9.22 16 31 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.04 1.47 7.77 -2.39 -0.02 1.45 16 34 H 0.04 1.50 7.25 -2.39 -0.02 1.48 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.13 1.22 5.81 -2.39 -0.01 1.21 16 39 H 0.06 1.49 7.60 -2.38 -0.02 1.47 16 40 H 0.15 0.96 7.94 -2.39 -0.02 0.94 16 41 H 0.13 1.01 7.58 -2.39 -0.02 0.99 16 42 H 0.15 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.16 -0.13 7.74 -2.39 -0.02 -0.14 16 44 H 0.42 5.69 8.96 -92.71 -0.83 4.86 16 45 H 0.00 0.10 6.94 -2.39 -0.02 0.08 16 46 H 0.06 3.40 5.94 -2.39 -0.01 3.39 16 Total: -1.00 -89.69 360.37 1.69 -88.00 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.19 Total: 9.44 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 5.66 Total: 30.37 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.64 Total: -126.09 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: 0.45 Total: -50.37 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -89.69 1.69 -88.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050221501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.652 kcal (2) G-P(sol) polarization free energy of solvation -89.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds