Wall clock time and date at job start Tue Mar 31 2020 18:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48490 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47237 * 300.00915 * 3 2 1 6 6 H 1.48507 * 109.46805 * 60.00091 * 3 2 1 7 7 C 1.38814 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46929 * 125.37700 * 179.97438 * 9 7 2 11 11 C 1.54183 * 106.26316 * 162.16646 * 10 9 7 12 12 H 1.08998 * 109.28686 * 271.45349 * 11 10 9 13 13 C 1.50708 * 110.50804 * 151.09664 * 11 10 9 14 14 C 1.51326 * 113.54895 * 289.39348 * 13 11 10 15 15 C 1.51630 * 111.98366 * 304.61360 * 14 13 11 16 16 N 1.44514 * 112.65102 * 42.75259 * 15 14 13 17 17 C 1.34777 * 116.62690 * 154.60933 * 16 15 14 18 18 O 1.21281 * 119.99724 * 174.23822 * 17 16 15 19 19 C 1.50703 * 120.00395 * 354.23464 * 17 16 15 20 20 C 1.52996 * 109.47309 * 180.02562 * 19 17 16 21 21 H 1.08992 * 110.54317 * 303.60771 * 20 19 17 22 22 C 1.54228 * 110.60531 * 180.58800 * 20 19 17 23 23 C 1.51310 * 103.55898 * 241.48678 * 22 20 19 24 24 O 1.21227 * 125.39653 * 180.02562 * 23 22 20 25 25 N 1.33882 * 109.20566 * 0.02562 * 23 22 20 26 26 C 1.33879 * 114.47305 * 359.97438 * 25 23 22 27 27 O 1.21227 * 125.39391 * 180.02562 * 26 25 23 28 28 C 1.44094 * 126.74006 * 334.89292 * 16 15 14 29 29 H 1.09010 * 109.10791 * 253.58461 * 28 16 15 30 30 C 1.46822 * 125.37727 * 0.02562 * 9 7 2 31 31 H 0.96991 * 119.99887 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.09191 * 42.97197 * 10 9 7 33 33 H 1.09000 * 110.09460 * 281.36899 * 10 9 7 34 34 H 1.08995 * 108.67079 * 168.34181 * 13 11 10 35 35 H 1.09000 * 108.66573 * 50.44389 * 13 11 10 36 36 H 1.08999 * 108.98557 * 183.96225 * 14 13 11 37 37 H 1.09006 * 108.91298 * 65.21072 * 14 13 11 38 38 H 1.09000 * 108.84443 * 281.93634 * 15 14 13 39 39 H 1.08995 * 108.85065 * 163.57349 * 15 14 13 40 40 H 1.09001 * 109.46702 * 60.00153 * 19 17 16 41 41 H 1.08997 * 109.47005 * 300.00856 * 19 17 16 42 42 H 1.09000 * 110.60767 * 0.02562 * 22 20 19 43 43 H 1.09002 * 110.60285 * 122.96854 * 22 20 19 44 44 H 0.96992 * 122.75914 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.83930 * 300.38311 * 30 9 7 46 46 H 1.08997 * 109.84011 * 61.28790 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9379 -3.7237 -0.0016 11 6 0.8373 -4.7035 0.4521 12 1 0.8507 -4.7816 1.5392 13 6 1.0637 -6.0669 -0.1489 14 6 0.8055 -6.1212 -1.6390 15 6 -0.5880 -5.6385 -1.9916 16 7 -0.9684 -4.4528 -1.2582 17 6 -1.8945 -3.6590 -1.8316 18 8 -2.3353 -2.7056 -1.2252 19 6 -2.3823 -3.9561 -3.2262 20 6 -3.4219 -2.9111 -3.6363 21 1 -4.2410 -2.8840 -2.9178 22 6 -3.9502 -3.1993 -5.0563 23 6 -3.5535 -1.9668 -5.8393 24 8 -3.7805 -1.7788 -7.0152 25 7 -2.9121 -1.1170 -5.0277 26 6 -2.7818 -1.5462 -3.7663 27 8 -2.2374 -0.9377 -2.8703 28 6 -0.4559 -4.0283 0.0199 29 1 -1.2149 -4.1995 0.7834 30 6 -0.1360 -2.5256 -0.0005 31 1 -0.4849 0.8400 0.0004 32 1 2.7754 -3.7523 0.6955 33 1 2.2766 -3.9796 -1.0055 34 1 0.4043 -6.7801 0.3456 35 1 2.0960 -6.3632 0.0373 36 1 0.9218 -7.1493 -1.9818 37 1 1.5373 -5.4935 -2.1475 38 1 -1.3018 -6.4325 -1.7718 39 1 -0.6254 -5.4197 -3.0587 40 1 -2.8346 -4.9476 -3.2494 41 1 -1.5420 -3.9237 -3.9196 42 1 -3.4728 -4.0874 -5.4704 43 1 -5.0341 -3.3150 -5.0462 44 1 -2.5706 -0.2605 -5.3287 45 1 -0.5529 -2.0440 0.8840 46 1 -0.5505 -2.0699 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050221505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:31 Heat of formation + Delta-G solvation = -53.132724 kcal Electronic energy + Delta-G solvation = -31235.041732 eV Core-core repulsion = 27126.283990 eV Total energy + Delta-G solvation = -4108.757742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78044 -40.41258 -38.49450 -37.57370 -35.73760 -35.36512 -33.53960 -33.12340 -31.96356 -29.76187 -28.80901 -26.93806 -25.56856 -25.06776 -23.87002 -22.16559 -21.74049 -21.20452 -20.24027 -19.24607 -17.82037 -17.78360 -17.04952 -16.65330 -16.37567 -16.05141 -15.68553 -15.34607 -14.88646 -14.56826 -14.34717 -14.06011 -14.01119 -13.85253 -13.67369 -13.65281 -13.03408 -12.96148 -12.55393 -12.45250 -12.32950 -12.03599 -11.59903 -11.37588 -11.22167 -11.00162 -10.89275 -10.73384 -10.64355 -10.56146 -10.23878 -10.14127 -10.10928 -9.95205 -9.80684 -9.71145 -9.51433 -8.94031 -8.36642 -7.89222 -6.58391 -5.45603 -2.82889 1.61564 2.84488 2.87007 3.12944 3.43901 3.49903 3.54267 3.57711 4.02679 4.18149 4.31782 4.57654 4.64673 4.79178 4.86652 4.94451 5.09766 5.13949 5.19309 5.25647 5.32520 5.40918 5.46466 5.57788 5.71014 5.75113 5.77583 5.88076 5.94570 6.02278 6.06821 6.11676 6.24615 6.27199 6.51561 6.65738 6.74588 6.78422 6.85231 7.19880 7.39983 7.69938 7.86864 7.95960 8.06638 8.24457 8.52569 8.77858 9.42663 10.03858 10.68419 11.61301 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.005424 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.621619 B = 5160.654778 C = 7420.236919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.607 5.607 10 C 0.143 3.857 11 C -0.103 4.103 12 H 0.078 0.922 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.117 3.883 16 N -0.592 5.592 17 C 0.486 3.514 18 O -0.475 6.475 19 C -0.127 4.127 20 C -0.107 4.107 21 H 0.130 0.870 22 C -0.154 4.154 23 C 0.531 3.469 24 O -0.501 6.501 25 N -0.685 5.685 26 C 0.503 3.497 27 O -0.398 6.398 28 C 0.133 3.867 29 H 0.055 0.945 30 C 0.167 3.833 31 H 0.251 0.749 32 H 0.030 0.970 33 H 0.012 0.988 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.413 0.587 45 H 0.049 0.951 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -15.700 -8.447 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.139 4.139 14 C -0.166 4.166 15 C -0.007 4.007 16 N -0.328 5.328 17 C 0.272 3.728 18 O -0.347 6.347 19 C -0.168 4.168 20 C -0.129 4.129 21 H 0.148 0.852 22 C -0.194 4.194 23 C 0.319 3.681 24 O -0.374 6.374 25 N -0.352 5.352 26 C 0.287 3.713 27 O -0.260 6.260 28 C 0.029 3.971 29 H 0.073 0.927 30 C 0.043 3.957 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.252 0.748 45 H 0.067 0.933 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.318 -14.673 -8.069 18.274 hybrid contribution 0.806 1.221 -0.198 1.476 sum -6.512 -13.452 -8.267 17.079 Atomic orbital electron populations 1.70010 1.04195 1.24630 1.55077 1.24842 0.95665 0.97302 1.02215 0.86198 0.78644 0.84675 0.77119 1.20744 1.21978 1.21874 1.18931 0.90122 0.82448 1.45455 0.90889 1.44379 1.01931 0.99684 1.87410 1.21351 0.93812 0.86231 0.96960 1.21312 0.96074 0.94486 1.00369 0.90351 1.20469 1.01647 0.96645 0.95113 1.21114 0.96742 1.01258 0.97495 1.20757 0.96577 0.87509 0.95841 1.46701 1.41355 1.23669 1.21051 1.20347 0.81031 0.83395 0.88051 1.90907 1.54677 1.25901 1.63210 1.21692 0.98925 0.99488 0.96674 1.21806 1.00244 0.93186 0.97704 0.85246 1.22570 1.04996 0.97897 0.93953 1.20719 0.75624 0.85702 0.86089 1.90788 1.53739 1.78428 1.14468 1.44924 1.54414 1.22603 1.13306 1.20773 0.80293 0.88860 0.81400 1.91165 1.35372 1.59451 1.40045 1.21040 0.94224 0.98962 0.82848 0.92697 1.21727 0.83463 0.86557 1.03971 0.93813 0.95228 0.97033 0.92568 0.91667 0.90951 0.91234 0.92941 0.91315 0.87641 0.88788 0.86211 0.86119 0.74792 0.93310 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.17 10.26 55.49 0.57 -27.60 16 2 C 0.00 -0.06 5.48 -17.43 -0.10 -0.16 16 3 Si 0.90 23.41 29.55 -169.99 -5.02 18.38 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.24 -7.10 10.25 -15.06 -0.15 -7.25 16 8 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -16.30 3.39 -171.51 -0.58 -16.88 16 10 C 0.14 3.04 6.65 -3.19 -0.02 3.01 16 11 C -0.10 -1.77 3.05 -91.58 -0.28 -2.05 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.10 -1.27 5.17 -28.72 -0.15 -1.42 16 14 C -0.13 -1.44 5.83 -28.27 -0.16 -1.60 16 15 C 0.12 1.32 5.70 -5.80 -0.03 1.28 16 16 N -0.59 -9.59 3.09 -170.33 -0.53 -10.11 16 17 C 0.49 8.17 6.45 -10.98 -0.07 8.10 16 18 O -0.48 -10.32 10.89 -17.45 -0.19 -10.51 16 19 C -0.13 -1.35 3.39 -27.88 -0.09 -1.45 16 20 C -0.11 -1.14 2.72 -90.83 -0.25 -1.38 16 21 H 0.13 1.33 8.03 -51.93 -0.42 0.91 16 22 C -0.15 -1.11 6.67 -26.94 -0.18 -1.29 16 23 C 0.53 5.87 8.55 -11.08 -0.09 5.77 16 24 O -0.50 -7.01 18.02 5.60 0.10 -6.91 16 25 N -0.69 -8.48 5.48 -11.39 -0.06 -8.54 16 26 C 0.50 7.63 7.71 -11.08 -0.09 7.54 16 27 O -0.40 -8.68 15.42 -17.40 -0.27 -8.95 16 28 C 0.13 2.61 3.09 -69.30 -0.21 2.40 16 29 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 30 C 0.17 4.35 4.13 -3.53 -0.01 4.33 16 31 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.01 0.25 6.69 -51.93 -0.35 -0.09 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.90 6.99 -51.93 -0.36 0.53 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.64 6.07 -51.93 -0.32 0.32 16 40 H 0.11 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.09 0.94 7.38 -51.93 -0.38 0.55 16 42 H 0.12 0.59 7.74 -51.93 -0.40 0.19 16 43 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.41 4.87 8.96 -40.82 -0.37 4.51 16 45 H 0.05 1.47 7.37 -51.93 -0.38 1.08 16 46 H 0.09 2.52 4.71 -51.93 -0.24 2.27 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -39.50 355.36 -9.08 -48.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.56 Total: 1.36 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -1.90 Total: 15.83 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.60 Total: -63.14 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.36 Total: -26.37 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.50 -9.08 -48.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050221505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.550 kcal (2) G-P(sol) polarization free energy of solvation -39.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds