Wall clock time and date at job start Tue Mar 31 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48490 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47237 * 300.00915 * 3 2 1 6 6 H 1.48507 * 109.46805 * 60.00091 * 3 2 1 7 7 C 1.38814 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46929 * 125.37700 * 179.97438 * 9 7 2 11 11 C 1.54183 * 106.26316 * 162.16646 * 10 9 7 12 12 H 1.08998 * 109.28686 * 271.45349 * 11 10 9 13 13 C 1.50708 * 110.50804 * 151.09664 * 11 10 9 14 14 C 1.51326 * 113.54895 * 289.39348 * 13 11 10 15 15 C 1.51630 * 111.98366 * 304.61360 * 14 13 11 16 16 N 1.44514 * 112.65102 * 42.75259 * 15 14 13 17 17 C 1.34777 * 116.62690 * 154.60933 * 16 15 14 18 18 O 1.21281 * 119.99724 * 174.23822 * 17 16 15 19 19 C 1.50703 * 120.00395 * 354.23464 * 17 16 15 20 20 C 1.52996 * 109.47309 * 180.02562 * 19 17 16 21 21 H 1.08992 * 110.54317 * 303.60771 * 20 19 17 22 22 C 1.54228 * 110.60531 * 180.58800 * 20 19 17 23 23 C 1.51310 * 103.55898 * 241.48678 * 22 20 19 24 24 O 1.21227 * 125.39653 * 180.02562 * 23 22 20 25 25 N 1.33882 * 109.20566 * 0.02562 * 23 22 20 26 26 C 1.33879 * 114.47305 * 359.97438 * 25 23 22 27 27 O 1.21227 * 125.39391 * 180.02562 * 26 25 23 28 28 C 1.44094 * 126.74006 * 334.89292 * 16 15 14 29 29 H 1.09010 * 109.10791 * 253.58461 * 28 16 15 30 30 C 1.46822 * 125.37727 * 0.02562 * 9 7 2 31 31 H 0.96991 * 119.99887 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.09191 * 42.97197 * 10 9 7 33 33 H 1.09000 * 110.09460 * 281.36899 * 10 9 7 34 34 H 1.08995 * 108.67079 * 168.34181 * 13 11 10 35 35 H 1.09000 * 108.66573 * 50.44389 * 13 11 10 36 36 H 1.08999 * 108.98557 * 183.96225 * 14 13 11 37 37 H 1.09006 * 108.91298 * 65.21072 * 14 13 11 38 38 H 1.09000 * 108.84443 * 281.93634 * 15 14 13 39 39 H 1.08995 * 108.85065 * 163.57349 * 15 14 13 40 40 H 1.09001 * 109.46702 * 60.00153 * 19 17 16 41 41 H 1.08997 * 109.47005 * 300.00856 * 19 17 16 42 42 H 1.09000 * 110.60767 * 0.02562 * 22 20 19 43 43 H 1.09002 * 110.60285 * 122.96854 * 22 20 19 44 44 H 0.96992 * 122.75914 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.83930 * 300.38311 * 30 9 7 46 46 H 1.08997 * 109.84011 * 61.28790 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9379 -3.7237 -0.0016 11 6 0.8373 -4.7035 0.4521 12 1 0.8507 -4.7816 1.5392 13 6 1.0637 -6.0669 -0.1489 14 6 0.8055 -6.1212 -1.6390 15 6 -0.5880 -5.6385 -1.9916 16 7 -0.9684 -4.4528 -1.2582 17 6 -1.8945 -3.6590 -1.8316 18 8 -2.3353 -2.7056 -1.2252 19 6 -2.3823 -3.9561 -3.2262 20 6 -3.4219 -2.9111 -3.6363 21 1 -4.2410 -2.8840 -2.9178 22 6 -3.9502 -3.1993 -5.0563 23 6 -3.5535 -1.9668 -5.8393 24 8 -3.7805 -1.7788 -7.0152 25 7 -2.9121 -1.1170 -5.0277 26 6 -2.7818 -1.5462 -3.7663 27 8 -2.2374 -0.9377 -2.8703 28 6 -0.4559 -4.0283 0.0199 29 1 -1.2149 -4.1995 0.7834 30 6 -0.1360 -2.5256 -0.0005 31 1 -0.4849 0.8400 0.0004 32 1 2.7754 -3.7523 0.6955 33 1 2.2766 -3.9796 -1.0055 34 1 0.4043 -6.7801 0.3456 35 1 2.0960 -6.3632 0.0373 36 1 0.9218 -7.1493 -1.9818 37 1 1.5373 -5.4935 -2.1475 38 1 -1.3018 -6.4325 -1.7718 39 1 -0.6254 -5.4197 -3.0587 40 1 -2.8346 -4.9476 -3.2494 41 1 -1.5420 -3.9237 -3.9196 42 1 -3.4728 -4.0874 -5.4704 43 1 -5.0341 -3.3150 -5.0462 44 1 -2.5706 -0.2605 -5.3287 45 1 -0.5529 -2.0440 0.8840 46 1 -0.5505 -2.0699 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050221505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:30 Heat of formation + Delta-G solvation = -84.524903 kcal Electronic energy + Delta-G solvation = -31236.402999 eV Core-core repulsion = 27126.283990 eV Total energy + Delta-G solvation = -4110.119009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79998 -41.70661 -39.66418 -38.95919 -36.96192 -36.84014 -34.70623 -34.40258 -33.65540 -31.50365 -29.85247 -28.42425 -27.28620 -26.17969 -25.32868 -23.40024 -22.87119 -22.46431 -21.67494 -20.45683 -19.23783 -18.86785 -18.65466 -17.81177 -17.67823 -17.18767 -16.95462 -16.87186 -16.28450 -15.94656 -15.66859 -15.52979 -15.19647 -15.02360 -14.95492 -14.77111 -14.24899 -14.11759 -13.86272 -13.72462 -13.59643 -13.32334 -13.06476 -12.93909 -12.81993 -12.63832 -12.36087 -12.11378 -12.04206 -11.86157 -11.72528 -11.59620 -11.48719 -11.36192 -11.29714 -11.27463 -10.88930 -10.72307 -10.21065 -9.22515 -8.78709 -7.74260 -5.14552 0.60911 1.36448 1.39246 1.49458 1.84571 1.88261 1.95102 2.30345 2.47907 3.22308 3.30191 3.37392 3.46007 3.66807 3.76071 3.79111 3.91482 3.98765 4.13465 4.15726 4.19643 4.36430 4.59790 4.61742 4.66428 4.71009 4.78396 4.79288 4.88034 4.89252 4.97777 4.98839 5.06135 5.08303 5.22250 5.25772 5.44188 5.46618 5.54003 5.62057 5.76568 5.92230 6.16429 6.34843 6.44831 6.68408 6.99656 7.13384 7.57785 7.86715 8.48068 9.28931 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.005424 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.621619 B = 5160.654778 C = 7420.236919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.252 4.252 8 H 0.079 0.921 9 N -0.632 5.632 10 C 0.137 3.863 11 C -0.089 4.089 12 H 0.076 0.924 13 C -0.097 4.097 14 C -0.128 4.128 15 C 0.102 3.898 16 N -0.596 5.596 17 C 0.468 3.532 18 O -0.538 6.538 19 C -0.116 4.116 20 C -0.100 4.100 21 H 0.133 0.867 22 C -0.128 4.128 23 C 0.531 3.469 24 O -0.529 6.529 25 N -0.688 5.688 26 C 0.499 3.501 27 O -0.481 6.481 28 C 0.148 3.852 29 H 0.044 0.956 30 C 0.182 3.818 31 H 0.237 0.763 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.167 0.833 41 H 0.108 0.892 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.408 0.592 45 H -0.016 1.016 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -20.493 -10.666 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.226 1.226 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.359 5.359 10 C 0.012 3.988 11 C -0.109 4.109 12 H 0.095 0.905 13 C -0.135 4.135 14 C -0.165 4.165 15 C -0.019 4.019 16 N -0.330 5.330 17 C 0.256 3.744 18 O -0.414 6.414 19 C -0.155 4.155 20 C -0.122 4.122 21 H 0.151 0.849 22 C -0.167 4.167 23 C 0.322 3.678 24 O -0.404 6.404 25 N -0.353 5.353 26 C 0.286 3.714 27 O -0.349 6.349 28 C 0.043 3.957 29 H 0.062 0.938 30 C 0.057 3.943 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.184 0.816 41 H 0.126 0.874 42 H 0.180 0.820 43 H 0.174 0.826 44 H 0.246 0.754 45 H 0.002 0.998 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.306 -19.565 -10.343 23.306 hybrid contribution 0.838 2.738 0.477 2.903 sum -6.468 -16.828 -9.866 20.551 Atomic orbital electron populations 1.70351 1.05867 1.24216 1.56594 1.25734 0.96517 1.00973 1.02794 0.85132 0.78427 0.80087 0.76446 1.18450 1.22621 1.21908 1.19349 0.90661 0.83902 1.44212 0.90307 1.44733 1.02752 1.01211 1.87165 1.21592 0.95114 0.84643 0.97428 1.21296 0.92665 0.96249 1.00680 0.90550 1.20493 1.03315 0.93271 0.96419 1.21188 0.95971 1.03474 0.95878 1.21267 0.97682 0.86229 0.96696 1.46813 1.40930 1.25338 1.19964 1.21571 0.80371 0.82275 0.90148 1.90904 1.56862 1.28402 1.65201 1.21816 0.99527 1.02119 0.92068 1.21879 1.00010 0.90027 1.00270 0.84940 1.22682 1.07298 0.96749 0.89953 1.21432 0.74328 0.86385 0.85640 1.90786 1.54708 1.79156 1.15775 1.45092 1.54250 1.22907 1.13081 1.21710 0.78615 0.90251 0.80821 1.91149 1.39267 1.61948 1.42565 1.20485 0.95185 0.94827 0.85220 0.93829 1.21283 0.82704 0.90850 0.99484 0.95349 0.95025 0.96145 0.89929 0.90174 0.86412 0.93483 0.88979 0.88602 0.81554 0.87417 0.82015 0.82562 0.75423 0.99789 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -63.10 10.26 21.65 0.22 -62.88 16 2 C -0.07 -4.15 5.48 84.86 0.47 -3.69 16 3 Si 0.97 50.64 29.55 68.60 2.03 52.67 16 4 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 6 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.25 -15.52 10.25 84.04 0.86 -14.65 16 8 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 9 N -0.63 -35.66 3.39 -696.53 -2.36 -38.02 16 10 C 0.14 5.87 6.65 86.70 0.58 6.44 16 11 C -0.09 -3.00 3.05 -11.41 -0.03 -3.04 16 12 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 13 C -0.10 -2.05 5.17 29.30 0.15 -1.90 16 14 C -0.13 -2.19 5.83 29.60 0.17 -2.02 16 15 C 0.10 1.77 5.70 86.30 0.49 2.27 16 16 N -0.60 -18.36 3.09 -811.20 -2.51 -20.87 16 17 C 0.47 15.52 6.45 87.66 0.57 16.08 16 18 O -0.54 -24.98 10.89 18.97 0.21 -24.77 16 19 C -0.12 -2.02 3.39 29.85 0.10 -1.92 16 20 C -0.10 -1.88 2.72 -10.93 -0.03 -1.91 16 21 H 0.13 2.50 8.03 -2.39 -0.02 2.48 16 22 C -0.13 -1.22 6.67 30.46 0.20 -1.02 16 23 C 0.53 10.66 8.55 87.99 0.75 11.41 16 24 O -0.53 -13.88 18.02 -2.87 -0.05 -13.93 16 25 N -0.69 -17.36 5.48 -427.79 -2.34 -19.70 16 26 C 0.50 15.74 7.71 87.99 0.68 16.42 16 27 O -0.48 -23.07 15.42 19.13 0.30 -22.78 16 28 C 0.15 5.96 3.09 45.38 0.14 6.10 16 29 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 30 C 0.18 10.19 4.13 86.54 0.36 10.55 16 31 H 0.24 16.16 8.31 -92.71 -0.77 15.39 16 32 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.02 0.86 6.69 -2.39 -0.02 0.84 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.03 6.99 -2.38 -0.02 1.02 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.18 6.07 -2.39 -0.01 1.16 16 40 H 0.17 0.92 7.91 -2.39 -0.02 0.90 16 41 H 0.11 1.66 7.38 -2.39 -0.02 1.64 16 42 H 0.16 0.36 7.74 -2.39 -0.02 0.34 16 43 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.41 10.43 8.96 -92.71 -0.83 9.60 16 45 H -0.02 -1.08 7.37 -2.39 -0.02 -1.10 16 46 H 0.05 3.42 4.71 -2.39 -0.01 3.41 16 Total: -1.00 -102.21 355.36 1.13 -101.08 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.19 Total: 10.08 kcal Atomic # 6 Polarization: 33.68 SS G_CDS: 5.45 Total: 39.13 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -6.99 Total: -141.48 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: 0.45 Total: -61.48 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Total: -102.21 1.13 -101.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050221505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.558 kcal (2) G-P(sol) polarization free energy of solvation -102.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds