Wall clock time and date at job start Tue Mar 31 2020 19:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48501 * 109.46906 * 269.99681 * 3 2 1 5 5 H 1.48496 * 109.47087 * 29.99907 * 3 2 1 6 6 H 1.48505 * 109.46950 * 149.99757 * 3 2 1 7 7 C 1.38814 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99846 * 162.21113 * 7 2 1 9 9 N 1.36933 * 120.00091 * 342.49537 * 7 2 1 10 10 C 1.46882 * 120.46416 * 331.42962 * 9 7 2 11 11 C 1.52852 * 109.02153 * 235.49041 * 10 9 7 12 12 C 1.52679 * 109.17352 * 307.82226 * 11 10 9 13 13 C 1.53485 * 113.61950 * 188.98656 * 12 11 10 14 14 N 1.47673 * 85.98425 * 137.70355 * 13 12 11 15 15 C 1.34783 * 134.45348 * 155.69430 * 14 13 12 16 16 O 1.21275 * 120.00101 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99801 * 359.97438 * 15 14 13 18 18 N 1.46498 * 109.46651 * 179.97438 * 17 15 14 19 19 C 1.33878 * 122.76292 * 269.70337 * 18 17 15 20 20 O 1.21228 * 125.39306 * 359.97438 * 19 18 17 21 21 C 1.51319 * 109.20786 * 179.84696 * 19 18 17 22 22 C 1.54230 * 103.55371 * 0.38795 * 21 19 18 23 23 C 1.33881 * 122.76384 * 90.00185 * 18 17 15 24 24 O 1.21228 * 125.39503 * 359.97438 * 23 18 17 25 25 C 1.47659 * 91.08589 * 335.68230 * 14 13 12 26 26 C 1.52666 * 113.18891 * 57.45673 * 12 11 10 27 27 C 1.46875 * 120.46856 * 151.70768 * 9 7 2 28 28 H 0.96999 * 119.99671 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58837 * 355.31568 * 10 9 7 30 30 H 1.09005 * 109.59150 * 115.74663 * 10 9 7 31 31 H 1.08997 * 109.61640 * 187.84299 * 11 10 9 32 32 H 1.09001 * 109.38377 * 67.65534 * 11 10 9 33 33 H 1.08998 * 113.79207 * 251.97314 * 13 12 11 34 34 H 1.09005 * 113.78905 * 23.44053 * 13 12 11 35 35 H 1.09005 * 109.47179 * 299.99385 * 17 15 14 36 36 H 1.08999 * 109.47137 * 59.99698 * 17 15 14 37 37 H 1.09001 * 110.79460 * 241.77997 * 21 19 18 38 38 H 1.08995 * 110.54765 * 118.88221 * 21 19 18 39 39 H 1.09000 * 110.60390 * 241.25858 * 22 21 19 40 40 H 1.08995 * 110.60019 * 118.29480 * 22 21 19 41 41 H 1.09004 * 113.79162 * 270.04187 * 25 14 13 42 42 H 1.09003 * 113.79234 * 138.58304 * 25 14 13 43 43 H 1.08997 * 109.53468 * 182.51922 * 26 12 11 44 44 H 1.09000 * 109.52990 * 62.29567 * 26 12 11 45 45 H 1.08994 * 109.59361 * 244.25678 * 27 9 7 46 46 H 1.09007 * 109.59032 * 4.68661 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0516 -1.2246 -0.2852 9 7 1.3732 -2.3604 0.3577 10 6 0.2438 -2.3302 1.2964 11 6 0.5433 -3.2669 2.4665 12 6 0.9296 -4.6404 1.9231 13 6 1.0403 -5.7216 3.0069 14 7 0.3409 -6.6041 2.0515 15 6 0.2764 -7.9383 1.8721 16 8 -0.4005 -8.3978 0.9769 17 6 1.0456 -8.8592 2.7839 18 7 0.8111 -10.2491 2.3849 19 6 -0.1856 -10.9887 2.8870 20 8 -0.9933 -10.6130 3.7091 21 6 -0.1459 -12.3668 2.2632 22 6 1.0653 -12.2978 1.3109 23 6 1.5793 -10.8863 1.4925 24 8 2.5350 -10.4079 0.9203 25 6 -0.2598 -5.4389 1.3718 26 6 2.1273 -4.5976 0.9774 27 6 1.8134 -3.6512 -0.1876 28 1 -0.4849 0.8401 -0.0004 29 1 0.1055 -1.3152 1.6691 30 1 -0.6621 -2.6620 0.7890 31 1 -0.3413 -3.3599 3.0965 32 1 1.3683 -2.8616 3.0524 33 1 2.0645 -6.0278 3.2196 34 1 0.4645 -5.5032 3.9063 35 1 2.1100 -8.6351 2.7128 36 1 0.7118 -8.7152 3.8115 37 1 -1.0613 -12.5657 1.7058 38 1 0.0096 -13.1282 3.0273 39 1 0.7525 -12.4625 0.2798 40 1 1.8246 -13.0231 1.6031 41 1 -1.2220 -5.1365 1.7852 42 1 -0.2688 -5.5203 0.2849 43 1 2.3230 -5.5981 0.5916 44 1 3.0035 -4.2354 1.5151 45 1 1.0206 -4.0781 -0.8017 46 1 2.7089 -3.5063 -0.7921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050749541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:29 Heat of formation + Delta-G solvation = -57.358484 kcal Electronic energy + Delta-G solvation = -29552.976558 eV Core-core repulsion = 25444.035573 eV Total energy + Delta-G solvation = -4108.940985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.01221 -41.83619 -39.70096 -39.60976 -37.55154 -36.93987 -34.51849 -34.22846 -32.34358 -31.51804 -29.85466 -28.08870 -27.14112 -27.04066 -25.85545 -23.98694 -23.36475 -22.67348 -21.32589 -20.17668 -19.56318 -18.76687 -18.47875 -18.20253 -17.60179 -17.49366 -16.92047 -16.80573 -16.57898 -15.80521 -15.62694 -15.54054 -15.31984 -15.23572 -14.99680 -14.94201 -14.71833 -14.40210 -13.97825 -13.91726 -13.57012 -13.51319 -13.28786 -13.07068 -12.98888 -12.93509 -12.56106 -12.29458 -12.12250 -12.06238 -11.83438 -11.82991 -11.70964 -11.36638 -11.27129 -11.20232 -11.15708 -10.64148 -10.48593 -9.82891 -8.65591 -7.86582 -5.31937 0.46768 1.14882 1.36607 1.47290 1.48848 1.58588 1.65792 1.90302 2.52224 3.17520 3.18247 3.23789 3.24984 3.39745 3.61644 3.67931 3.79272 3.93772 3.97419 4.03453 4.15553 4.19061 4.19977 4.36022 4.45702 4.54765 4.55369 4.68723 4.72572 4.74601 4.79158 4.89159 4.90508 4.90834 5.00585 5.11568 5.16821 5.32493 5.33988 5.53635 5.66326 5.71321 5.80101 6.25383 6.40849 6.55225 6.65251 6.87232 7.16939 7.87890 8.38869 9.19310 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.002406 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.119720 B =11636.192143 C =12022.982176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.607 5.607 10 C 0.175 3.825 11 C -0.110 4.110 12 C -0.075 4.075 13 C 0.117 3.883 14 N -0.636 5.636 15 C 0.514 3.486 16 O -0.588 6.588 17 C 0.086 3.914 18 N -0.568 5.568 19 C 0.522 3.478 20 O -0.522 6.522 21 C -0.139 4.139 22 C -0.140 4.140 23 C 0.520 3.480 24 O -0.523 6.523 25 C 0.114 3.886 26 C -0.094 4.094 27 C 0.143 3.857 28 H 0.250 0.750 29 H 0.056 0.944 30 H -0.008 1.008 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.002 0.998 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -26.110 10.908 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.049 3.951 11 C -0.150 4.150 12 C -0.076 4.076 13 C -0.004 4.004 14 N -0.370 5.370 15 C 0.303 3.697 16 O -0.469 6.469 17 C -0.039 4.039 18 N -0.311 5.311 19 C 0.314 3.686 20 O -0.397 6.397 21 C -0.178 4.178 22 C -0.179 4.179 23 C 0.312 3.688 24 O -0.397 6.397 25 C -0.009 4.009 26 C -0.132 4.132 27 C 0.017 3.983 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.010 0.990 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.020 0.980 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.752 -25.975 10.545 28.168 hybrid contribution -0.120 1.752 -0.660 1.876 sum 2.632 -24.223 9.884 26.294 Atomic orbital electron populations 1.70190 1.06675 1.25839 1.55348 1.25777 0.95974 1.01448 1.01314 0.85314 0.78225 0.79689 0.77424 1.21545 1.21799 1.19345 1.19494 0.93005 0.86113 1.40606 0.91771 1.44267 1.37177 1.01893 1.49708 1.20524 0.87570 0.98188 0.88773 1.21829 1.01617 0.93472 0.98033 1.21883 0.94991 0.94495 0.96225 1.23668 0.99295 0.84253 0.93165 1.50114 1.48932 1.03128 1.34824 1.21017 0.81569 0.81945 0.85147 1.90670 1.44436 1.75934 1.35872 1.21549 1.03166 0.79422 0.99788 1.46655 1.30765 1.12817 1.40823 1.21811 0.77516 0.89840 0.79424 1.90760 1.38159 1.78003 1.32733 1.22595 1.01733 0.92402 1.01083 1.22603 0.99444 0.91343 1.04465 1.21848 0.80512 0.90846 0.75574 1.90775 1.27674 1.73955 1.47251 1.23268 0.98052 0.81562 0.97988 1.21565 0.96741 0.98434 0.96507 1.20972 0.96708 0.86398 0.94181 0.94121 0.92525 0.98954 0.90135 0.91267 0.87147 0.86488 0.84474 0.84118 0.84449 0.82443 0.84545 0.82467 0.89034 0.92767 0.92127 0.90621 0.98012 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 11.21 21.65 0.24 -54.80 16 2 C -0.05 -2.76 4.90 84.86 0.42 -2.34 16 3 Si 0.97 44.52 29.59 68.60 2.03 46.55 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.26 -14.29 9.55 84.03 0.80 -13.49 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -29.99 2.97 -699.69 -2.08 -32.06 16 10 C 0.18 8.04 5.20 86.26 0.45 8.49 16 11 C -0.11 -3.58 5.24 30.44 0.16 -3.42 16 12 C -0.07 -2.16 0.77 -52.03 -0.04 -2.20 16 13 C 0.12 2.35 7.74 86.31 0.67 3.02 16 14 N -0.64 -17.39 3.44 -842.52 -2.90 -20.29 16 15 C 0.51 15.37 8.13 87.66 0.71 16.08 16 16 O -0.59 -22.76 17.16 -3.01 -0.05 -22.82 16 17 C 0.09 1.80 5.78 85.63 0.50 2.29 16 18 N -0.57 -11.50 2.04 -760.70 -1.55 -13.05 16 19 C 0.52 9.57 8.08 87.99 0.71 10.28 16 20 O -0.52 -13.49 17.47 -2.87 -0.05 -13.54 16 21 C -0.14 -0.83 7.03 30.46 0.21 -0.62 16 22 C -0.14 -0.88 7.03 30.46 0.21 -0.67 16 23 C 0.52 9.88 8.08 87.99 0.71 10.59 16 24 O -0.52 -14.20 17.48 -2.87 -0.05 -14.25 16 25 C 0.11 3.57 7.62 86.32 0.66 4.23 16 26 C -0.09 -3.01 5.22 30.60 0.16 -2.85 16 27 C 0.14 6.02 6.38 86.42 0.55 6.57 16 28 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.06 2.98 5.98 -2.38 -0.01 2.96 16 30 H -0.01 -0.38 8.08 -2.38 -0.02 -0.40 16 31 H 0.08 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.11 1.66 8.09 -2.39 -0.02 1.64 16 34 H 0.12 1.80 8.09 -2.38 -0.02 1.78 16 35 H 0.14 2.41 7.83 -2.38 -0.02 2.39 16 36 H 0.14 2.35 7.82 -2.39 -0.02 2.33 16 37 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.09 2.74 8.07 -2.38 -0.02 2.72 16 42 H 0.05 2.00 7.41 -2.39 -0.02 1.98 16 43 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.00 0.09 7.49 -2.39 -0.02 0.07 16 46 H 0.05 2.14 7.92 -2.38 -0.02 2.12 16 Total: -1.00 -84.26 377.40 3.46 -80.80 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.99 Total: 7.50 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 6.88 Total: 35.97 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -6.29 Total: -120.21 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.15 Total: -50.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -84.26 3.46 -80.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050749541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.440 kcal (2) G-P(sol) polarization free energy of solvation -84.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds