Wall clock time and date at job start Tue Mar 31 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46723 * 300.00128 * 3 2 1 6 6 H 1.48497 * 109.46739 * 59.99982 * 3 2 1 7 7 C 1.38819 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 169.21915 * 7 2 1 9 9 N 1.36934 * 119.99452 * 349.22489 * 7 2 1 10 10 C 1.47164 * 120.99498 * 328.39195 * 9 7 2 11 11 C 1.53301 * 108.41217 * 230.54820 * 10 9 7 12 12 O 1.42959 * 109.22328 * 307.71570 * 11 10 9 13 13 C 1.42966 * 114.16512 * 62.58010 * 12 11 10 14 14 C 1.47158 * 120.98189 * 148.47055 * 9 7 2 15 15 H 1.09001 * 109.68353 * 249.19566 * 14 9 7 16 16 C 1.53005 * 109.67942 * 9.70904 * 14 9 7 17 17 N 1.46501 * 109.46941 * 298.64867 * 16 14 9 18 18 C 1.34776 * 119.99765 * 180.02562 * 17 16 14 19 19 O 1.21693 * 120.00177 * 359.97438 * 18 17 16 20 20 C 1.46686 * 120.00081 * 179.97438 * 18 17 16 21 21 C 1.38155 * 126.19206 * 180.02562 * 20 18 17 22 22 C 1.38943 * 106.95033 * 180.02562 * 21 20 18 23 23 C 1.36274 * 108.01992 * 0.04846 * 22 21 20 24 24 N 1.34747 * 108.84014 * 359.92088 * 23 22 21 25 25 H 0.96997 * 125.71555 * 180.02562 * 24 23 22 26 26 C 1.51089 * 122.57828 * 179.89561 * 23 22 21 27 27 C 1.53541 * 107.72112 * 344.13467 * 26 23 22 28 28 O 1.42976 * 109.69295 * 48.01158 * 27 26 23 29 29 C 1.43416 * 114.34869 * 288.98040 * 28 27 26 30 30 H 0.97002 * 120.00384 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.65287 * 110.82550 * 10 9 7 32 32 H 1.08995 * 109.68149 * 350.28395 * 10 9 7 33 33 H 1.09000 * 109.51256 * 187.79026 * 11 10 9 34 34 H 1.09001 * 109.51172 * 67.64233 * 11 10 9 35 35 H 1.09003 * 109.50843 * 177.49261 * 13 12 11 36 36 H 1.08998 * 109.55153 * 57.37002 * 13 12 11 37 37 H 1.08995 * 109.46844 * 178.64814 * 16 14 9 38 38 H 1.08997 * 109.47031 * 58.64501 * 16 14 9 39 39 H 0.96999 * 120.00597 * 359.97438 * 17 16 14 40 40 H 1.08004 * 126.52457 * 359.97438 * 21 20 18 41 41 H 1.09000 * 109.81158 * 103.69287 * 26 23 22 42 42 H 1.09009 * 109.80958 * 224.57857 * 26 23 22 43 43 H 1.09000 * 109.43482 * 168.09080 * 27 26 23 44 44 H 1.09002 * 109.43170 * 287.95439 * 27 26 23 45 45 H 1.09000 * 109.76229 * 291.10393 * 29 28 27 46 46 H 1.08999 * 109.80957 * 170.36037 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0760 -1.2104 -0.1744 9 7 1.3437 -2.3775 0.2228 10 6 0.1596 -2.4238 1.0954 11 6 0.3520 -3.5541 2.1130 12 8 0.6774 -4.7613 1.4198 13 6 1.9041 -4.7034 0.6879 14 6 1.7912 -3.6321 -0.4026 15 1 1.0663 -3.9472 -1.1532 16 6 3.1561 -3.4214 -1.0612 17 7 3.0413 -2.4023 -2.1074 18 6 4.1251 -2.0505 -2.8272 19 8 5.1991 -2.5789 -2.6077 20 6 4.0101 -1.0305 -3.8752 21 6 5.0318 -0.5752 -4.6860 22 6 4.4832 0.3833 -5.5291 23 6 3.1592 0.5008 -5.2288 24 7 2.8624 -0.3522 -4.2289 25 1 1.9883 -0.4691 -3.8249 26 6 2.2431 1.4605 -5.9517 27 6 3.1227 2.4683 -6.7053 28 8 4.1392 1.7725 -7.4310 29 6 5.1599 1.1907 -6.6084 30 1 -0.4851 0.8400 0.0004 31 1 -0.7301 -2.6169 0.4961 32 1 0.0516 -1.4736 1.6184 33 1 -0.5691 -3.6958 2.6783 34 1 1.1624 -3.2961 2.7949 35 1 2.0996 -5.6721 0.2279 36 1 2.7207 -4.4501 1.3640 37 1 3.4951 -4.3586 -1.5025 38 1 3.8747 -3.0922 -0.3107 39 1 2.1852 -1.9813 -2.2827 40 1 6.0612 -0.9015 -4.6674 41 1 1.6189 0.9138 -6.6586 42 1 1.6146 1.9847 -5.2315 43 1 2.5067 3.0388 -7.4004 44 1 3.5878 3.1485 -5.9917 45 1 5.7624 1.9786 -6.1563 46 1 5.7947 0.5414 -7.2113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050954109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:08 Heat of formation + Delta-G solvation = -52.737589 kcal Electronic energy + Delta-G solvation = -30151.630496 eV Core-core repulsion = 26042.889888 eV Total energy + Delta-G solvation = -4108.740608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51920 -39.22412 -38.39208 -37.76866 -35.41519 -33.72055 -32.44420 -31.95029 -31.21242 -30.51006 -28.91414 -27.35078 -26.21880 -24.69955 -23.61314 -23.54154 -22.05319 -21.36695 -19.91533 -19.67697 -18.95357 -18.23949 -16.80147 -16.32047 -16.00835 -15.89296 -15.78864 -15.31117 -14.98572 -14.74920 -14.56945 -14.32140 -14.21774 -13.87910 -13.77590 -13.46432 -13.37737 -13.07636 -13.00097 -12.74145 -12.43857 -12.16958 -11.86559 -11.64614 -11.42807 -11.16973 -11.01972 -10.98375 -10.84665 -10.50399 -10.34446 -10.17043 -9.90292 -9.78930 -9.69050 -9.07698 -8.82162 -8.73157 -8.46897 -7.81009 -6.85696 -6.04334 -3.54872 1.70649 2.68088 3.13323 3.15768 3.26187 3.31939 3.62284 3.73998 3.82624 4.22038 4.45306 4.60072 4.79630 5.00456 5.05176 5.08589 5.12536 5.21714 5.31517 5.41397 5.47354 5.49665 5.52126 5.63844 5.71550 5.75790 5.82741 5.92773 5.98593 6.07951 6.09736 6.16550 6.23232 6.24276 6.43509 6.65226 6.81272 6.92734 6.96937 7.00208 7.10304 7.38096 7.50235 7.58376 7.78322 8.06748 8.16165 8.65554 8.92578 9.52487 10.12235 11.01350 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.003856 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.916677 B = 7259.221342 C = 8369.662970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.254 4.254 8 H 0.074 0.926 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.137 3.863 17 N -0.695 5.695 18 C 0.583 3.417 19 O -0.550 6.550 20 C -0.042 4.042 21 C -0.098 4.098 22 C -0.226 4.226 23 C 0.051 3.949 24 N -0.516 5.516 25 H 0.422 0.578 26 C -0.088 4.088 27 C 0.070 3.930 28 O -0.382 6.382 29 C 0.139 3.861 30 H 0.255 0.745 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.408 0.592 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 0.853 -8.823 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.384 4.384 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.346 5.346 18 C 0.370 3.630 19 O -0.429 6.429 20 C -0.155 4.155 21 C -0.124 4.124 22 C -0.233 4.233 23 C -0.069 4.069 24 N -0.111 5.111 25 H 0.260 0.740 26 C -0.127 4.127 27 C -0.007 4.007 28 O -0.300 6.300 29 C 0.062 3.938 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.245 0.755 40 H 0.165 0.835 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.169 0.369 -8.723 9.289 hybrid contribution -0.448 1.381 0.715 1.618 sum 2.721 1.750 -8.008 8.637 Atomic orbital electron populations 1.69992 1.05094 1.25601 1.53574 1.25139 0.95273 0.98107 1.00503 0.86381 0.79884 0.84112 0.77608 1.19981 1.21582 1.21259 1.19297 0.91385 0.83311 1.44357 0.90871 1.44110 1.32527 1.02990 1.52142 1.21414 0.88922 0.96795 0.91002 1.23349 0.99247 0.86544 0.95189 1.87809 1.40660 1.36182 1.66372 1.22857 0.86838 0.98668 0.93939 1.21445 0.93669 0.89337 0.93799 0.94121 1.21199 0.97709 0.90166 0.89680 1.45867 1.11935 1.41308 1.35442 1.16986 0.84451 0.81176 0.80410 1.90779 1.27455 1.55397 1.69290 1.20605 0.86928 1.03525 1.04445 1.20713 0.98365 0.97594 0.95697 1.19841 0.93941 1.05147 1.04371 1.20179 0.95832 0.97175 0.93729 1.41742 1.10985 1.30413 1.27919 0.73971 1.21012 0.97080 0.95815 0.98744 1.22519 0.89553 0.92779 0.95882 1.87978 1.36794 1.71717 1.33548 1.21001 0.88649 0.94377 0.89736 0.93454 0.95229 0.89046 0.90177 0.94066 0.89804 0.93397 0.91992 0.91193 0.75471 0.83463 0.89359 0.89462 0.88150 0.92564 0.92259 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.10 11.17 55.49 0.62 -22.48 16 2 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 3 Si 0.89 20.33 29.57 -169.99 -5.03 15.31 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.07 7.09 -15.06 -0.11 -6.17 16 8 H 0.07 1.82 5.84 -52.49 -0.31 1.52 16 9 N -0.59 -13.11 3.03 -164.29 -0.50 -13.61 16 10 C 0.14 3.16 5.38 -3.52 -0.02 3.14 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.41 10.74 -35.23 -0.38 -7.79 16 13 C 0.06 0.96 6.29 37.31 0.23 1.20 16 14 C 0.12 2.35 3.20 -67.42 -0.22 2.13 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.47 4.44 -4.04 -0.02 2.45 16 17 N -0.70 -12.89 3.81 -61.62 -0.23 -13.13 16 18 C 0.58 11.23 7.79 -12.85 -0.10 11.13 16 19 O -0.55 -11.88 16.88 5.20 0.09 -11.79 16 20 C -0.04 -0.72 7.07 -81.75 -0.58 -1.30 16 21 C -0.10 -1.57 10.63 -39.35 -0.42 -1.99 16 22 C -0.23 -3.27 6.02 -105.01 -0.63 -3.90 16 23 C 0.05 0.73 7.14 -81.83 -0.58 0.15 16 24 N -0.52 -8.00 5.97 -5.43 -0.03 -8.03 16 25 H 0.42 6.20 8.19 -40.82 -0.33 5.86 16 26 C -0.09 -0.98 6.56 -27.41 -0.18 -1.16 16 27 C 0.07 0.71 6.78 37.44 0.25 0.96 16 28 O -0.38 -4.64 10.74 -35.23 -0.38 -5.02 16 29 C 0.14 1.63 7.25 36.07 0.26 1.90 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.21 6.36 -51.93 -0.33 1.88 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 39 H 0.41 7.69 6.51 -40.82 -0.27 7.42 16 40 H 0.15 2.20 8.06 -52.48 -0.42 1.77 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -29.57 367.49 -8.91 -38.48 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.68 Total: 12.93 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.93 Total: 9.58 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.15 Total: -57.25 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.67 Total: -24.60 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.57 -8.91 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.255 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds