Wall clock time and date at job start Tue Mar 31 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46723 * 300.00128 * 3 2 1 6 6 H 1.48497 * 109.46739 * 59.99982 * 3 2 1 7 7 C 1.38819 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 169.21915 * 7 2 1 9 9 N 1.36934 * 119.99452 * 349.22489 * 7 2 1 10 10 C 1.47164 * 120.99498 * 328.39195 * 9 7 2 11 11 C 1.53301 * 108.41217 * 230.54820 * 10 9 7 12 12 O 1.42959 * 109.22328 * 307.71570 * 11 10 9 13 13 C 1.42966 * 114.16512 * 62.58010 * 12 11 10 14 14 C 1.47158 * 120.98189 * 148.47055 * 9 7 2 15 15 H 1.09001 * 109.68353 * 249.19566 * 14 9 7 16 16 C 1.53005 * 109.67942 * 9.70904 * 14 9 7 17 17 N 1.46501 * 109.46941 * 298.64867 * 16 14 9 18 18 C 1.34776 * 119.99765 * 180.02562 * 17 16 14 19 19 O 1.21693 * 120.00177 * 359.97438 * 18 17 16 20 20 C 1.46686 * 120.00081 * 179.97438 * 18 17 16 21 21 C 1.38155 * 126.19206 * 180.02562 * 20 18 17 22 22 C 1.38943 * 106.95033 * 180.02562 * 21 20 18 23 23 C 1.36274 * 108.01992 * 0.04846 * 22 21 20 24 24 N 1.34747 * 108.84014 * 359.92088 * 23 22 21 25 25 H 0.96997 * 125.71555 * 180.02562 * 24 23 22 26 26 C 1.51089 * 122.57828 * 179.89561 * 23 22 21 27 27 C 1.53541 * 107.72112 * 344.13467 * 26 23 22 28 28 O 1.42976 * 109.69295 * 48.01158 * 27 26 23 29 29 C 1.43416 * 114.34869 * 288.98040 * 28 27 26 30 30 H 0.97002 * 120.00384 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.65287 * 110.82550 * 10 9 7 32 32 H 1.08995 * 109.68149 * 350.28395 * 10 9 7 33 33 H 1.09000 * 109.51256 * 187.79026 * 11 10 9 34 34 H 1.09001 * 109.51172 * 67.64233 * 11 10 9 35 35 H 1.09003 * 109.50843 * 177.49261 * 13 12 11 36 36 H 1.08998 * 109.55153 * 57.37002 * 13 12 11 37 37 H 1.08995 * 109.46844 * 178.64814 * 16 14 9 38 38 H 1.08997 * 109.47031 * 58.64501 * 16 14 9 39 39 H 0.96999 * 120.00597 * 359.97438 * 17 16 14 40 40 H 1.08004 * 126.52457 * 359.97438 * 21 20 18 41 41 H 1.09000 * 109.81158 * 103.69287 * 26 23 22 42 42 H 1.09009 * 109.80958 * 224.57857 * 26 23 22 43 43 H 1.09000 * 109.43482 * 168.09080 * 27 26 23 44 44 H 1.09002 * 109.43170 * 287.95439 * 27 26 23 45 45 H 1.09000 * 109.76229 * 291.10393 * 29 28 27 46 46 H 1.08999 * 109.80957 * 170.36037 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0760 -1.2104 -0.1744 9 7 1.3437 -2.3775 0.2228 10 6 0.1596 -2.4238 1.0954 11 6 0.3520 -3.5541 2.1130 12 8 0.6774 -4.7613 1.4198 13 6 1.9041 -4.7034 0.6879 14 6 1.7912 -3.6321 -0.4026 15 1 1.0663 -3.9472 -1.1532 16 6 3.1561 -3.4214 -1.0612 17 7 3.0413 -2.4023 -2.1074 18 6 4.1251 -2.0505 -2.8272 19 8 5.1991 -2.5789 -2.6077 20 6 4.0101 -1.0305 -3.8752 21 6 5.0318 -0.5752 -4.6860 22 6 4.4832 0.3833 -5.5291 23 6 3.1592 0.5008 -5.2288 24 7 2.8624 -0.3522 -4.2289 25 1 1.9883 -0.4691 -3.8249 26 6 2.2431 1.4605 -5.9517 27 6 3.1227 2.4683 -6.7053 28 8 4.1392 1.7725 -7.4310 29 6 5.1599 1.1907 -6.6084 30 1 -0.4851 0.8400 0.0004 31 1 -0.7301 -2.6169 0.4961 32 1 0.0516 -1.4736 1.6184 33 1 -0.5691 -3.6958 2.6783 34 1 1.1624 -3.2961 2.7949 35 1 2.0996 -5.6721 0.2279 36 1 2.7207 -4.4501 1.3640 37 1 3.4951 -4.3586 -1.5025 38 1 3.8747 -3.0922 -0.3107 39 1 2.1852 -1.9813 -2.2827 40 1 6.0612 -0.9015 -4.6674 41 1 1.6189 0.9138 -6.6586 42 1 1.6146 1.9847 -5.2315 43 1 2.5067 3.0388 -7.4004 44 1 3.5878 3.1485 -5.9917 45 1 5.7624 1.9786 -6.1563 46 1 5.7947 0.5414 -7.2113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:07 Heat of formation + Delta-G solvation = -73.014255 kcal Electronic energy + Delta-G solvation = -30152.509758 eV Core-core repulsion = 26042.889888 eV Total energy + Delta-G solvation = -4109.619870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.69443 -40.70814 -39.82733 -38.82862 -37.00580 -35.40845 -33.49202 -33.42597 -32.56616 -32.05199 -30.04987 -29.05355 -27.57313 -25.89567 -25.28430 -24.59518 -23.48574 -22.70958 -21.49963 -21.09768 -20.03574 -19.61356 -18.44753 -17.66712 -17.37250 -17.26838 -16.86300 -16.52217 -16.45509 -16.28920 -16.08267 -15.66649 -15.56211 -15.29388 -15.09279 -14.91598 -14.65752 -14.53203 -14.36607 -14.06415 -13.61258 -13.47830 -13.18365 -13.05425 -12.95816 -12.81716 -12.55980 -12.38669 -12.20571 -12.05237 -11.91688 -11.80748 -11.38348 -11.23442 -10.80046 -10.71373 -10.62377 -10.06787 -9.88300 -9.01021 -8.67824 -7.94244 -5.45488 0.39956 1.29613 1.38396 1.45587 1.52559 1.96282 2.18282 2.36618 2.37639 2.93392 3.00243 3.20815 3.38588 3.63582 3.82198 3.93294 3.98353 4.05788 4.17425 4.19690 4.28357 4.29467 4.44474 4.53019 4.56435 4.59847 4.61628 4.63210 4.70319 4.76349 4.78796 4.92097 4.95370 4.98135 5.07293 5.11527 5.25507 5.42177 5.58508 5.62888 5.68629 5.81661 6.19301 6.25376 6.31248 6.33428 6.58092 7.04499 7.15392 7.69377 8.26218 9.09484 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.003856 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.916677 B = 7259.221342 C = 8369.662970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.045 3.955 12 O -0.396 6.396 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.039 0.961 16 C 0.141 3.859 17 N -0.694 5.694 18 C 0.582 3.418 19 O -0.581 6.581 20 C -0.076 4.076 21 C -0.099 4.099 22 C -0.235 4.235 23 C 0.052 3.948 24 N -0.517 5.517 25 H 0.422 0.578 26 C -0.089 4.089 27 C 0.067 3.933 28 O -0.392 6.392 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.009 0.991 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.406 0.594 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 0.948 -9.825 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.765 3.235 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.033 4.033 12 O -0.315 6.315 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.057 0.943 16 C 0.017 3.983 17 N -0.343 5.343 18 C 0.371 3.629 19 O -0.463 6.463 20 C -0.189 4.189 21 C -0.126 4.126 22 C -0.241 4.241 23 C -0.068 4.068 24 N -0.111 5.111 25 H 0.261 0.739 26 C -0.127 4.127 27 C -0.010 4.010 28 O -0.310 6.310 29 C 0.063 3.937 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.243 0.757 40 H 0.170 0.830 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.199 0.450 -9.724 10.247 hybrid contribution -0.449 1.348 0.978 1.725 sum 2.750 1.798 -8.746 9.343 Atomic orbital electron populations 1.70081 1.05767 1.25585 1.55145 1.25482 0.95628 0.99675 1.01299 0.85703 0.78188 0.82268 0.77293 1.21276 1.21063 1.21945 1.19239 0.90889 0.84110 1.42815 0.91939 1.44290 1.32371 1.03656 1.52762 1.21244 0.88171 0.96922 0.91241 1.23226 1.00580 0.85304 0.94152 1.87813 1.41401 1.35822 1.66442 1.22982 0.86283 0.99618 0.93237 1.21558 0.93663 0.88408 0.94329 0.94341 1.21180 0.96814 0.90948 0.89316 1.45853 1.11725 1.41355 1.35400 1.17229 0.83958 0.81188 0.80550 1.90743 1.28357 1.56735 1.70428 1.20443 0.88253 1.04762 1.05424 1.20948 0.98454 0.97641 0.95525 1.20219 0.94185 1.04935 1.04739 1.20885 0.96691 0.96523 0.92723 1.41760 1.10564 1.30548 1.28275 0.73887 1.21203 0.96989 0.95501 0.98961 1.22734 0.89347 0.92393 0.96545 1.87973 1.37215 1.71838 1.34020 1.21129 0.88685 0.94647 0.89226 0.93862 0.97268 0.91637 0.87704 0.93876 0.86349 0.93215 0.89814 0.92952 0.75715 0.82996 0.88003 0.88537 0.85253 0.92341 0.90989 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.86 11.17 21.65 0.24 -47.61 16 2 C -0.02 -1.17 5.06 84.86 0.43 -0.75 16 3 Si 0.94 42.21 29.57 68.60 2.03 44.24 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.24 -11.57 7.09 84.04 0.60 -10.98 16 8 H 0.06 3.16 5.84 -2.91 -0.02 3.14 16 9 N -0.60 -26.78 3.03 -673.68 -2.04 -28.82 16 10 C 0.15 6.57 5.38 86.35 0.46 7.04 16 11 C 0.05 1.62 6.99 72.08 0.50 2.13 16 12 O -0.40 -14.12 10.74 -148.98 -1.60 -15.72 16 13 C 0.06 1.84 6.29 72.08 0.45 2.29 16 14 C 0.13 4.67 3.20 44.96 0.14 4.81 16 15 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 16 C 0.14 5.06 4.44 86.38 0.38 5.44 16 17 N -0.69 -25.96 3.81 -467.07 -1.78 -27.74 16 18 C 0.58 22.75 7.79 86.45 0.67 23.42 16 19 O -0.58 -25.48 16.88 -4.33 -0.07 -25.55 16 20 C -0.08 -2.66 7.07 40.37 0.29 -2.38 16 21 C -0.10 -3.15 10.63 22.42 0.24 -2.91 16 22 C -0.23 -6.48 6.02 -20.11 -0.12 -6.60 16 23 C 0.05 1.43 7.14 41.78 0.30 1.73 16 24 N -0.52 -15.88 5.97 -171.09 -1.02 -16.90 16 25 H 0.42 12.45 8.19 -92.71 -0.76 11.69 16 26 C -0.09 -1.75 6.56 30.15 0.20 -1.55 16 27 C 0.07 1.15 6.78 72.16 0.49 1.64 16 28 O -0.39 -8.48 10.74 -148.98 -1.60 -10.08 16 29 C 0.14 2.99 7.25 71.27 0.52 3.50 16 30 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 3.22 6.36 -2.39 -0.02 3.20 16 33 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 2.07 7.52 -2.39 -0.02 2.05 16 39 H 0.41 15.51 6.51 -92.71 -0.60 14.91 16 40 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.16 367.49 -0.64 -63.80 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.34 Total: 37.54 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 5.55 Total: 26.85 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -4.60 Total: -121.07 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -3.27 Total: -51.35 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -63.16 -0.64 -63.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.215 kcal (2) G-P(sol) polarization free energy of solvation -63.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds