Wall clock time and date at job start Tue Mar 31 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48502 * 109.46746 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46880 * 119.99768 * 3 2 1 7 7 C 1.38815 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99854 * 169.22739 * 7 2 1 9 9 N 1.36939 * 120.00132 * 349.22768 * 7 2 1 10 10 C 1.47162 * 120.98837 * 328.38587 * 9 7 2 11 11 C 1.53305 * 108.41351 * 230.54676 * 10 9 7 12 12 O 1.42964 * 109.22088 * 307.71997 * 11 10 9 13 13 C 1.42964 * 114.16457 * 62.58098 * 12 11 10 14 14 C 1.47146 * 120.98120 * 148.46846 * 9 7 2 15 15 H 1.09001 * 109.67796 * 249.19306 * 14 9 7 16 16 C 1.52994 * 109.68545 * 9.70543 * 14 9 7 17 17 N 1.46505 * 109.47235 * 298.64866 * 16 14 9 18 18 C 1.34776 * 120.00002 * 179.97438 * 17 16 14 19 19 O 1.21590 * 119.99866 * 0.02562 * 18 17 16 20 20 C 1.47509 * 119.99975 * 179.97438 * 18 17 16 21 21 O 1.35188 * 127.15296 * 0.02562 * 20 18 17 22 22 N 1.21479 * 111.54967 * 179.97438 * 21 20 18 23 23 C 1.29069 * 111.68742 * 359.89739 * 22 21 20 24 24 C 1.35251 * 127.15477 * 180.02562 * 20 18 17 25 25 C 1.50104 * 131.33689 * 0.24822 * 24 20 18 26 26 C 1.53569 * 108.06136 * 163.78801 * 25 24 20 27 27 C 1.53127 * 109.74371 * 50.03835 * 26 25 24 28 28 C 1.50650 * 130.33540 * 180.45107 * 23 22 21 29 29 H 0.96999 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.65131 * 110.82441 * 10 9 7 31 31 H 1.09003 * 109.68867 * 350.28898 * 10 9 7 32 32 H 1.09000 * 109.50951 * 187.79616 * 11 10 9 33 33 H 1.08999 * 109.51081 * 67.64083 * 11 10 9 34 34 H 1.09002 * 109.50978 * 177.49694 * 13 12 11 35 35 H 1.09001 * 109.55290 * 57.36940 * 13 12 11 36 36 H 1.09004 * 109.47453 * 178.64768 * 16 14 9 37 37 H 1.09005 * 109.47141 * 58.64921 * 16 14 9 38 38 H 0.96997 * 120.00063 * 359.97438 * 17 16 14 39 39 H 1.09007 * 109.75325 * 283.44647 * 25 24 20 40 40 H 1.09001 * 109.75870 * 44.12965 * 25 24 20 41 41 H 1.09001 * 109.41895 * 170.17684 * 26 25 24 42 42 H 1.09003 * 109.41365 * 289.97297 * 26 25 24 43 43 H 1.08996 * 109.36608 * 168.13308 * 27 26 25 44 44 H 1.09002 * 109.29077 * 48.41684 * 27 26 25 45 45 H 1.09001 * 109.74219 * 282.73181 * 28 23 22 46 46 H 1.09001 * 109.73753 * 43.44370 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2105 -0.1743 9 7 1.3436 -2.3776 0.2227 10 6 0.1596 -2.4238 1.0954 11 6 0.3520 -3.5542 2.1130 12 8 0.6772 -4.7614 1.4196 13 6 1.9040 -4.7036 0.6877 14 6 1.7911 -3.6321 -0.4027 15 1 1.0661 -3.9470 -1.1532 16 6 3.1559 -3.4214 -1.0614 17 7 3.0411 -2.4023 -2.1076 18 6 4.1251 -2.0498 -2.8268 19 8 5.1981 -2.5778 -2.6075 20 6 4.0094 -1.0241 -3.8806 21 8 2.8960 -0.3490 -4.2441 22 7 3.1226 0.4324 -5.1463 23 6 4.3623 0.4013 -5.5041 24 6 4.9951 -0.5636 -4.6841 25 6 6.4500 -0.9220 -4.7734 26 6 6.9890 -0.3945 -6.1112 27 6 6.5982 1.0761 -6.2826 28 6 5.0926 1.1901 -6.5595 29 1 -0.4850 0.8400 0.0004 30 1 -0.7301 -2.6168 0.4962 31 1 0.0515 -1.4736 1.6184 32 1 -0.5692 -3.6959 2.6782 33 1 1.1624 -3.2963 2.7948 34 1 2.0993 -5.6722 0.2276 35 1 2.7206 -4.4503 1.3639 36 1 3.4949 -4.3586 -1.5027 37 1 3.8746 -3.0922 -0.3108 38 1 2.1850 -1.9813 -2.2828 39 1 6.9943 -0.4607 -3.9493 40 1 6.5660 -2.0050 -4.7308 41 1 8.0751 -0.4860 -6.1256 42 1 6.5662 -0.9794 -6.9280 43 1 7.1527 1.5023 -7.1186 44 1 6.8417 1.6220 -5.3711 45 1 4.8666 0.7835 -7.5453 46 1 4.7890 2.2359 -6.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051023342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:30 Heat of formation + Delta-G solvation = 0.065932 kcal Electronic energy + Delta-G solvation = -30372.056058 eV Core-core repulsion = 26265.605183 eV Total energy + Delta-G solvation = -4106.450875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.75646 -39.41172 -38.36095 -37.74191 -35.42851 -33.69673 -32.83630 -32.27562 -31.62708 -30.52232 -29.73751 -27.26716 -26.00817 -24.90616 -23.48062 -23.14877 -22.85722 -21.55015 -20.18938 -19.80676 -19.51486 -17.92329 -17.51394 -16.63379 -16.02129 -15.83267 -15.64386 -15.12990 -15.00524 -14.67889 -14.42134 -14.40329 -14.09559 -13.92615 -13.75794 -13.63145 -13.25334 -12.94687 -12.66922 -12.62116 -12.52727 -11.97868 -11.73708 -11.58762 -11.14707 -11.10818 -11.06392 -10.88280 -10.80912 -10.60189 -10.45224 -10.28925 -10.08671 -9.97250 -9.82714 -9.67393 -9.32618 -9.03209 -8.72376 -8.42544 -6.74872 -5.92780 -3.43098 1.08334 2.18877 2.92377 3.29653 3.36005 3.36156 3.38147 3.64409 3.92443 4.33044 4.48573 4.52606 4.65457 4.69010 4.93601 5.05379 5.10943 5.19318 5.25963 5.30942 5.36691 5.50968 5.55876 5.61340 5.67226 5.69600 5.80268 5.80763 5.85360 5.96289 5.99646 6.01636 6.10336 6.11310 6.16422 6.20841 6.30757 6.48832 6.67743 6.84408 7.04574 7.47296 7.66874 7.82607 7.87983 8.26886 8.29281 8.47432 9.03325 9.63770 10.22827 11.13818 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.003980 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.455316 B = 7032.697794 C = 8217.902291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.017 3.983 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.134 3.866 17 N -0.674 5.674 18 C 0.596 3.404 19 O -0.534 6.534 20 C -0.062 4.062 21 O 0.111 5.889 22 N -0.336 5.336 23 C 0.009 3.991 24 C -0.135 4.135 25 C -0.045 4.045 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.038 4.038 29 H 0.257 0.743 30 H 0.030 0.970 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.422 0.578 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -2.512 -8.935 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.325 5.325 18 C 0.379 3.621 19 O -0.413 6.413 20 C -0.127 4.127 21 O 0.041 5.959 22 N -0.038 5.038 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.082 4.082 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.076 4.076 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.261 0.739 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.021 -2.208 -9.153 13.040 hybrid contribution 0.633 1.279 0.141 1.434 sum 9.654 -0.929 -9.012 13.239 Atomic orbital electron populations 1.69953 1.05163 1.25930 1.52732 1.25116 0.95261 0.98148 0.99854 0.86493 0.79129 0.83692 0.78291 1.20783 1.21378 1.20877 1.19099 0.91143 0.83314 1.45576 0.91167 1.44065 1.32609 1.02932 1.52092 1.21411 0.88973 0.96736 0.90965 1.23360 0.99199 0.86560 0.95205 1.87807 1.40643 1.36224 1.66359 1.22852 0.86870 0.98602 0.93935 1.21441 0.93507 0.89526 0.93848 0.93907 1.21301 0.98196 0.89936 0.89501 1.45970 1.12241 1.40171 1.34099 1.16484 0.84990 0.80575 0.80029 1.90790 1.27443 1.54622 1.68444 1.23581 0.87257 1.00326 1.01542 1.85337 1.32778 1.39115 1.38690 1.73446 1.18307 1.09371 1.02692 1.23352 0.90207 1.00102 1.01517 1.21009 0.98484 0.98033 0.96486 1.20046 0.87734 1.02479 0.97972 1.21690 1.01016 0.95797 0.97261 1.21650 0.94152 0.97294 1.02602 1.20087 0.93722 0.98977 0.94789 0.93265 0.95178 0.89040 0.90212 0.94087 0.89850 0.93439 0.91659 0.90854 0.73865 0.89681 0.89064 0.90802 0.91531 0.90640 0.91258 0.89500 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 11.17 55.49 0.62 -23.61 16 2 C 0.02 0.43 5.06 -17.43 -0.09 0.35 16 3 Si 0.89 21.35 29.57 -169.99 -5.03 16.33 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.44 7.09 -15.06 -0.11 -6.55 16 8 H 0.07 1.75 5.84 -52.49 -0.31 1.44 16 9 N -0.59 -13.39 3.03 -164.29 -0.50 -13.89 16 10 C 0.14 3.24 5.38 -3.52 -0.02 3.22 16 11 C 0.03 0.65 6.99 37.32 0.26 0.91 16 12 O -0.39 -7.43 10.74 -35.23 -0.38 -7.81 16 13 C 0.06 0.96 6.29 37.31 0.23 1.19 16 14 C 0.12 2.34 3.20 -67.43 -0.22 2.13 16 15 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 16 C 0.13 2.36 4.44 -4.04 -0.02 2.34 16 17 N -0.67 -12.64 3.81 -61.35 -0.23 -12.87 16 18 C 0.60 11.14 7.82 -12.48 -0.10 11.04 16 19 O -0.53 -10.45 15.93 5.29 0.08 -10.36 16 20 C -0.06 -1.13 7.28 -36.87 -0.27 -1.39 16 21 O 0.11 2.11 11.10 13.82 0.15 2.26 16 22 N -0.34 -6.06 12.03 33.15 0.40 -5.66 16 23 C 0.01 0.13 7.21 -82.51 -0.60 -0.46 16 24 C -0.14 -2.12 6.03 -104.71 -0.63 -2.75 16 25 C -0.05 -0.56 5.58 -27.88 -0.16 -0.72 16 26 C -0.12 -1.10 5.88 -26.37 -0.16 -1.25 16 27 C -0.12 -1.05 5.84 -26.40 -0.15 -1.20 16 28 C -0.04 -0.40 6.32 -27.64 -0.17 -0.58 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.26 6.36 -51.93 -0.33 1.93 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 38 H 0.42 8.52 7.22 -40.82 -0.29 8.23 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.17 7.77 -51.93 -0.40 0.77 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -29.24 366.04 -8.32 -37.56 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.78 Total: 6.25 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.18 Total: 6.29 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.29 Total: -56.03 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.14 Total: -15.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.24 -8.32 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051023342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.630 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds