Wall clock time and date at job start Tue Mar 31 2020 18:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48502 * 109.46746 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46880 * 119.99768 * 3 2 1 7 7 C 1.38815 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99854 * 169.22739 * 7 2 1 9 9 N 1.36939 * 120.00132 * 349.22768 * 7 2 1 10 10 C 1.47162 * 120.98837 * 328.38587 * 9 7 2 11 11 C 1.53305 * 108.41351 * 230.54676 * 10 9 7 12 12 O 1.42964 * 109.22088 * 307.71997 * 11 10 9 13 13 C 1.42964 * 114.16457 * 62.58098 * 12 11 10 14 14 C 1.47146 * 120.98120 * 148.46846 * 9 7 2 15 15 H 1.09001 * 109.67796 * 249.19306 * 14 9 7 16 16 C 1.52994 * 109.68545 * 9.70543 * 14 9 7 17 17 N 1.46505 * 109.47235 * 298.64866 * 16 14 9 18 18 C 1.34776 * 120.00002 * 179.97438 * 17 16 14 19 19 O 1.21590 * 119.99866 * 0.02562 * 18 17 16 20 20 C 1.47509 * 119.99975 * 179.97438 * 18 17 16 21 21 O 1.35188 * 127.15296 * 0.02562 * 20 18 17 22 22 N 1.21479 * 111.54967 * 179.97438 * 21 20 18 23 23 C 1.29069 * 111.68742 * 359.89739 * 22 21 20 24 24 C 1.35251 * 127.15477 * 180.02562 * 20 18 17 25 25 C 1.50104 * 131.33689 * 0.24822 * 24 20 18 26 26 C 1.53569 * 108.06136 * 163.78801 * 25 24 20 27 27 C 1.53127 * 109.74371 * 50.03835 * 26 25 24 28 28 C 1.50650 * 130.33540 * 180.45107 * 23 22 21 29 29 H 0.96999 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.65131 * 110.82441 * 10 9 7 31 31 H 1.09003 * 109.68867 * 350.28898 * 10 9 7 32 32 H 1.09000 * 109.50951 * 187.79616 * 11 10 9 33 33 H 1.08999 * 109.51081 * 67.64083 * 11 10 9 34 34 H 1.09002 * 109.50978 * 177.49694 * 13 12 11 35 35 H 1.09001 * 109.55290 * 57.36940 * 13 12 11 36 36 H 1.09004 * 109.47453 * 178.64768 * 16 14 9 37 37 H 1.09005 * 109.47141 * 58.64921 * 16 14 9 38 38 H 0.96997 * 120.00063 * 359.97438 * 17 16 14 39 39 H 1.09007 * 109.75325 * 283.44647 * 25 24 20 40 40 H 1.09001 * 109.75870 * 44.12965 * 25 24 20 41 41 H 1.09001 * 109.41895 * 170.17684 * 26 25 24 42 42 H 1.09003 * 109.41365 * 289.97297 * 26 25 24 43 43 H 1.08996 * 109.36608 * 168.13308 * 27 26 25 44 44 H 1.09002 * 109.29077 * 48.41684 * 27 26 25 45 45 H 1.09001 * 109.74219 * 282.73181 * 28 23 22 46 46 H 1.09001 * 109.73753 * 43.44370 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2105 -0.1743 9 7 1.3436 -2.3776 0.2227 10 6 0.1596 -2.4238 1.0954 11 6 0.3520 -3.5542 2.1130 12 8 0.6772 -4.7614 1.4196 13 6 1.9040 -4.7036 0.6877 14 6 1.7911 -3.6321 -0.4027 15 1 1.0661 -3.9470 -1.1532 16 6 3.1559 -3.4214 -1.0614 17 7 3.0411 -2.4023 -2.1076 18 6 4.1251 -2.0498 -2.8268 19 8 5.1981 -2.5778 -2.6075 20 6 4.0094 -1.0241 -3.8806 21 8 2.8960 -0.3490 -4.2441 22 7 3.1226 0.4324 -5.1463 23 6 4.3623 0.4013 -5.5041 24 6 4.9951 -0.5636 -4.6841 25 6 6.4500 -0.9220 -4.7734 26 6 6.9890 -0.3945 -6.1112 27 6 6.5982 1.0761 -6.2826 28 6 5.0926 1.1901 -6.5595 29 1 -0.4850 0.8400 0.0004 30 1 -0.7301 -2.6168 0.4962 31 1 0.0515 -1.4736 1.6184 32 1 -0.5692 -3.6959 2.6782 33 1 1.1624 -3.2963 2.7948 34 1 2.0993 -5.6722 0.2276 35 1 2.7206 -4.4503 1.3639 36 1 3.4949 -4.3586 -1.5027 37 1 3.8746 -3.0922 -0.3108 38 1 2.1850 -1.9813 -2.2828 39 1 6.9943 -0.4607 -3.9493 40 1 6.5660 -2.0050 -4.7308 41 1 8.0751 -0.4860 -6.1256 42 1 6.5662 -0.9794 -6.9280 43 1 7.1527 1.5023 -7.1186 44 1 6.8417 1.6220 -5.3711 45 1 4.8666 0.7835 -7.5453 46 1 4.7890 2.2359 -6.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051023342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:29 Heat of formation + Delta-G solvation = -18.483211 kcal Electronic energy + Delta-G solvation = -30372.860410 eV Core-core repulsion = 26265.605183 eV Total energy + Delta-G solvation = -4107.255226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.03618 -40.92705 -39.89791 -38.71613 -37.00121 -35.40612 -34.08026 -33.39608 -33.24449 -32.18371 -30.82563 -29.02510 -27.44575 -25.95385 -25.25452 -24.31334 -24.14518 -23.06473 -21.52191 -21.23132 -20.72581 -19.34245 -18.82813 -18.35151 -17.63052 -17.40018 -16.84887 -16.58937 -16.28356 -16.19175 -16.00945 -15.53503 -15.47386 -15.31403 -15.01647 -14.87117 -14.75388 -14.45439 -14.18393 -13.65416 -13.59775 -13.40990 -13.15318 -12.95879 -12.81854 -12.74925 -12.53959 -12.22023 -12.01304 -11.91853 -11.88977 -11.87271 -11.56240 -11.40319 -11.25633 -11.02466 -10.69796 -10.60203 -10.57505 -9.99550 -8.63315 -7.91227 -5.41169 -0.28804 0.98137 1.34821 1.38930 1.41710 1.56841 1.91308 2.23421 2.40638 2.85618 3.04761 3.25588 3.37787 3.45249 3.71008 3.83188 3.93511 3.95446 4.01238 4.22812 4.28574 4.33701 4.37650 4.41496 4.48667 4.51820 4.58422 4.64219 4.67033 4.74834 4.83305 4.89662 4.96502 5.01662 5.10688 5.12134 5.13980 5.27594 5.29168 5.34814 5.38752 5.62878 5.65539 6.29578 6.31710 6.39667 6.88513 7.01590 7.08384 7.74352 8.30107 9.13126 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.003980 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.455316 B = 7032.697794 C = 8217.902291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.027 4.027 3 Si 0.937 3.063 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.149 3.851 11 C 0.047 3.953 12 O -0.397 6.397 13 C 0.059 3.941 14 C 0.123 3.877 15 H 0.037 0.963 16 C 0.139 3.861 17 N -0.680 5.680 18 C 0.599 3.401 19 O -0.545 6.545 20 C -0.093 4.093 21 O 0.076 5.924 22 N -0.363 5.363 23 C 0.019 3.981 24 C -0.128 4.128 25 C -0.049 4.049 26 C -0.114 4.114 27 C -0.115 4.115 28 C -0.041 4.041 29 H 0.250 0.750 30 H 0.005 0.995 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -3.309 -10.047 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.224 4.224 3 Si 0.768 3.232 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.024 3.976 11 C -0.030 4.030 12 O -0.316 6.316 13 C -0.020 4.020 14 C 0.017 3.983 15 H 0.055 0.945 16 C 0.016 3.984 17 N -0.329 5.329 18 C 0.383 3.617 19 O -0.425 6.425 20 C -0.156 4.156 21 O 0.012 5.988 22 N -0.070 5.070 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.086 4.086 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.079 4.079 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.127 0.873 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.438 -3.058 -10.225 15.644 hybrid contribution -0.046 1.486 0.405 1.541 sum 11.392 -1.572 -9.820 15.122 Atomic orbital electron populations 1.70064 1.05977 1.25593 1.55122 1.25542 0.95666 1.00021 1.01171 0.85813 0.77972 0.81745 0.77706 1.21803 1.22034 1.20490 1.19165 0.91002 0.84008 1.42948 0.91400 1.44289 1.32403 1.03732 1.52773 1.21240 0.88127 0.96998 0.91277 1.23199 1.00603 0.85186 0.94043 1.87811 1.41574 1.35731 1.66445 1.22993 0.86303 0.99539 0.93157 1.21607 0.93828 0.88409 0.94447 0.94489 1.21340 0.97071 0.90878 0.89130 1.46018 1.11879 1.40513 1.34500 1.16539 0.84670 0.80500 0.79996 1.90766 1.27566 1.55180 1.68971 1.23665 0.88082 1.01293 1.02604 1.85295 1.33588 1.40145 1.39780 1.73435 1.20098 1.10165 1.03349 1.24189 0.89300 0.99342 1.01412 1.21575 0.99638 0.96991 0.95077 1.20238 0.85654 1.02381 1.00307 1.21711 1.02502 0.95916 0.95018 1.21693 0.92815 0.97077 1.03715 1.20432 0.94525 0.98769 0.94189 0.94081 0.97647 0.91756 0.87834 0.93633 0.86119 0.92867 0.88708 0.91889 0.74907 0.89710 0.89529 0.88193 0.90862 0.87183 0.92006 0.87296 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 11.17 21.65 0.24 -51.58 16 2 C -0.03 -1.42 5.06 84.86 0.43 -0.99 16 3 Si 0.94 45.12 29.57 68.60 2.03 47.15 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.24 -12.04 7.09 84.03 0.60 -11.45 16 8 H 0.07 3.42 5.84 -2.91 -0.02 3.40 16 9 N -0.61 -27.66 3.03 -673.70 -2.04 -29.70 16 10 C 0.15 6.78 5.38 86.36 0.46 7.25 16 11 C 0.05 1.73 6.99 72.08 0.50 2.24 16 12 O -0.40 -14.18 10.74 -148.98 -1.60 -15.78 16 13 C 0.06 1.84 6.29 72.08 0.45 2.29 16 14 C 0.12 4.55 3.20 44.97 0.14 4.70 16 15 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 16 C 0.14 4.76 4.44 86.38 0.38 5.14 16 17 N -0.68 -25.83 3.81 -466.29 -1.78 -27.60 16 18 C 0.60 22.64 7.82 86.69 0.68 23.32 16 19 O -0.54 -21.14 15.93 -4.00 -0.06 -21.20 16 20 C -0.09 -3.41 7.28 24.03 0.17 -3.23 16 21 O 0.08 3.04 11.10 59.47 0.66 3.70 16 22 N -0.36 -13.33 12.03 -50.84 -0.61 -13.94 16 23 C 0.02 0.56 7.21 43.77 0.32 0.87 16 24 C -0.13 -3.94 6.03 -19.92 -0.12 -4.06 16 25 C -0.05 -1.13 5.58 29.85 0.17 -0.96 16 26 C -0.11 -1.69 5.88 30.83 0.18 -1.51 16 27 C -0.12 -1.59 5.84 30.81 0.18 -1.41 16 28 C -0.04 -0.77 6.32 30.00 0.19 -0.58 16 29 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 3.27 6.36 -2.39 -0.02 3.26 16 32 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.06 2.31 7.52 -2.38 -0.02 2.29 16 38 H 0.41 17.33 7.22 -92.71 -0.67 16.66 16 39 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.09 2.11 7.77 -2.39 -0.02 2.09 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.97 8.10 -2.39 -0.02 0.96 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.32 366.04 1.91 -63.41 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.34 Total: 23.93 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 4.74 Total: 21.61 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -4.19 Total: -122.82 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.00 Total: -33.28 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.32 1.91 -63.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051023342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.924 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds