Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48498 * 109.47166 * 239.99309 * 3 2 1 5 5 H 1.48503 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99449 * 3 2 1 7 7 C 1.38813 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99293 * 190.81016 * 7 2 1 9 9 N 1.36932 * 120.00174 * 10.81493 * 7 2 1 10 10 C 1.47162 * 120.99293 * 31.06344 * 9 7 2 11 11 C 1.53297 * 108.41497 * 129.50753 * 10 9 7 12 12 O 1.42959 * 109.22076 * 52.28197 * 11 10 9 13 13 C 1.42965 * 114.16638 * 297.41858 * 12 11 10 14 14 C 1.47153 * 120.97974 * 211.03896 * 9 7 2 15 15 H 1.09005 * 109.68191 * 110.75141 * 14 9 7 16 16 C 1.53004 * 109.68387 * 350.23561 * 14 9 7 17 17 N 1.46500 * 109.46719 * 61.26807 * 16 14 9 18 18 C 1.34777 * 119.99652 * 180.02562 * 17 16 14 19 19 O 1.21495 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.48329 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31505 * 127.15059 * 359.97438 * 20 18 17 22 22 O 1.21432 * 111.52400 * 180.02562 * 21 20 18 23 23 C 1.33193 * 111.56770 * 359.94708 * 22 21 20 24 24 C 1.35370 * 106.64008 * 0.09791 * 23 22 21 25 25 C 1.50064 * 124.94178 * 179.86283 * 24 23 22 26 26 C 1.53547 * 108.26402 * 343.89376 * 25 24 23 27 27 C 1.53252 * 109.43996 * 49.20281 * 26 25 24 28 28 C 1.50605 * 129.60025 * 180.24954 * 23 22 21 29 29 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.68340 * 9.76447 * 10 9 7 31 31 H 1.09003 * 109.65042 * 249.23090 * 10 9 7 32 32 H 1.08998 * 109.51206 * 292.35581 * 11 10 9 33 33 H 1.09000 * 109.51520 * 172.20257 * 11 10 9 34 34 H 1.09003 * 109.51418 * 302.65633 * 13 12 11 35 35 H 1.09000 * 109.55495 * 182.53243 * 13 12 11 36 36 H 1.09001 * 109.46996 * 301.27455 * 16 14 9 37 37 H 1.08998 * 109.46960 * 181.26829 * 16 14 9 38 38 H 0.96997 * 120.00884 * 0.02562 * 17 16 14 39 39 H 1.08998 * 109.70731 * 103.59488 * 25 24 23 40 40 H 1.09001 * 109.71171 * 224.18628 * 25 24 23 41 41 H 1.09000 * 109.46001 * 169.22975 * 26 25 24 42 42 H 1.09002 * 109.46142 * 289.19637 * 26 25 24 43 43 H 1.09002 * 109.41133 * 170.06671 * 27 26 25 44 44 H 1.09004 * 109.41683 * 50.19605 * 27 26 25 45 45 H 1.08999 * 109.69450 * 282.83753 * 28 23 22 46 46 H 1.09002 * 109.69690 * 43.42434 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2104 0.1760 9 7 1.3437 -2.3776 -0.2214 10 6 0.1532 -2.4222 -1.0853 11 6 0.3389 -3.5489 -2.1081 12 8 0.6706 -4.7580 -1.4212 13 6 1.9028 -4.7015 -0.6985 14 6 1.7972 -3.6338 0.3964 15 1 1.0782 -3.9521 1.1514 16 6 3.1668 -3.4240 1.0454 17 7 3.0593 -2.4071 2.0945 18 6 4.1485 -2.0556 2.8063 19 8 5.2195 -2.5817 2.5776 20 6 4.0397 -1.0264 3.8689 21 7 2.9590 -0.3708 4.2318 22 8 3.1924 0.4084 5.1335 23 6 4.4744 0.3713 5.4931 24 6 5.0733 -0.5470 4.6991 25 6 6.5272 -0.9143 4.7553 26 6 7.2690 0.1763 5.5414 27 6 6.5276 0.4526 6.8539 28 6 5.1956 1.1543 6.5584 29 1 -0.4850 0.8400 -0.0004 30 1 0.0402 -1.4703 -1.6042 31 1 -0.7319 -2.6181 -0.4799 32 1 1.1438 -3.2879 -2.7951 33 1 -0.5864 -3.6897 -2.6668 34 1 2.7134 -4.4447 -1.3804 35 1 2.1035 -5.6713 -0.2432 36 1 3.8797 -3.0929 0.2902 37 1 3.5093 -4.3620 1.4823 38 1 2.2044 -1.9867 2.2769 39 1 6.6447 -1.8742 5.2581 40 1 6.9299 -0.9771 3.7443 41 1 8.2828 -0.1593 5.7596 42 1 7.3088 1.0891 4.9470 43 1 7.1411 1.0918 7.4889 44 1 6.3349 -0.4899 7.3666 45 1 5.3849 2.1678 6.2046 46 1 4.5893 1.1880 7.4636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051135410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = 1.842420 kcal Electronic energy + Delta-G solvation = -30308.203223 eV Core-core repulsion = 26201.829382 eV Total energy + Delta-G solvation = -4106.373841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.89890 -39.33212 -38.32383 -37.69942 -35.36816 -33.75934 -33.57659 -31.58312 -30.97832 -30.51753 -30.13455 -27.26889 -26.10903 -24.58604 -23.50285 -23.38625 -22.77994 -21.62271 -20.35871 -19.71798 -19.24504 -17.71963 -17.54944 -16.73210 -16.13148 -15.91342 -15.71458 -15.11534 -14.90735 -14.65892 -14.39602 -14.12286 -14.05422 -13.95689 -13.72989 -13.59426 -13.23988 -13.18030 -12.89968 -12.62915 -12.48287 -11.94969 -11.59548 -11.31304 -11.15643 -11.11237 -11.04886 -10.86674 -10.80533 -10.77166 -10.43343 -10.26998 -10.05646 -10.01584 -9.84374 -9.65470 -9.01614 -9.01223 -8.68741 -8.36647 -6.72963 -5.90171 -3.39662 1.38638 1.83624 2.98753 3.30740 3.36097 3.38073 3.43772 3.62297 4.23952 4.35276 4.49901 4.54030 4.62661 4.63368 4.91657 5.00087 5.11178 5.16585 5.28577 5.28923 5.32722 5.50950 5.54653 5.62259 5.67010 5.72341 5.77540 5.82199 5.84378 5.96481 5.99844 6.03716 6.09210 6.13458 6.18454 6.27197 6.32527 6.50764 6.71497 6.94912 7.06615 7.49114 7.69361 7.85428 7.98228 8.28849 8.30385 8.61484 9.06067 9.66379 10.25034 11.16649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003923 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.344651 B = 7136.422313 C = 8279.478130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.016 3.984 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.135 3.865 17 N -0.676 5.676 18 C 0.591 3.409 19 O -0.545 6.545 20 C -0.012 4.012 21 N -0.321 5.321 22 O 0.127 5.873 23 C -0.051 4.051 24 C -0.154 4.154 25 C -0.042 4.042 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.033 4.033 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.422 0.578 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.997 -0.708 10.950 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.726 3.274 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.022 4.022 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.327 5.327 18 C 0.374 3.626 19 O -0.423 6.423 20 C -0.171 4.171 21 N -0.022 5.022 22 O 0.053 5.947 23 C -0.115 4.115 24 C -0.159 4.159 25 C -0.080 4.080 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.071 4.071 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.206 -1.169 10.289 13.856 hybrid contribution 0.686 1.389 0.031 1.549 sum 9.893 0.220 10.321 14.298 Atomic orbital electron populations 1.69957 1.05140 1.25827 1.53053 1.25095 0.95271 0.98136 0.99936 0.86463 0.79078 0.83675 0.78213 1.20941 1.21366 1.20870 1.19100 0.91152 0.83323 1.45276 0.91234 1.44075 1.32031 1.02810 1.52770 1.21419 0.88814 0.96849 0.91018 1.23359 0.99148 0.86509 0.95289 1.87801 1.40168 1.36084 1.66992 1.22847 0.86738 0.98604 0.94021 1.21438 0.93478 0.89527 0.93873 0.94067 1.21267 0.98026 0.90044 0.89554 1.45928 1.12198 1.40341 1.34217 1.16815 0.84687 0.80799 0.80260 1.90713 1.27731 1.55031 1.68795 1.23108 0.90431 1.01902 1.01614 1.74712 1.22747 1.03003 1.01747 1.84720 1.25992 1.45895 1.38096 1.24080 0.84433 1.01527 1.01492 1.20611 0.98394 0.99569 0.97320 1.19958 0.87317 0.98540 1.02154 1.21752 0.99089 0.99298 0.96002 1.21662 0.94568 1.01234 0.98016 1.20212 0.94645 0.97892 0.94344 0.93342 0.88926 0.95254 0.94089 0.90194 0.93441 0.89852 0.91034 0.91865 0.73909 0.90055 0.89280 0.90749 0.91397 0.90259 0.91066 0.88939 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.98 11.13 55.49 0.62 -24.37 16 2 C 0.02 0.42 5.06 -17.43 -0.09 0.34 16 3 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.26 -6.68 7.11 -15.06 -0.11 -6.78 16 8 H 0.07 1.83 5.81 -52.48 -0.30 1.53 16 9 N -0.59 -14.03 3.03 -164.29 -0.50 -14.53 16 10 C 0.14 3.35 5.38 -3.53 -0.02 3.33 16 11 C 0.03 0.68 6.99 37.31 0.26 0.94 16 12 O -0.39 -7.70 10.74 -35.23 -0.38 -8.08 16 13 C 0.06 1.02 6.29 37.31 0.23 1.25 16 14 C 0.12 2.49 3.20 -67.42 -0.22 2.28 16 15 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.13 2.57 4.44 -4.04 -0.02 2.55 16 17 N -0.68 -13.90 3.80 -61.09 -0.23 -14.14 16 18 C 0.59 12.06 7.85 -12.11 -0.10 11.97 16 19 O -0.54 -11.53 16.09 5.37 0.09 -11.44 16 20 C -0.01 -0.23 7.19 -82.82 -0.60 -0.82 16 21 N -0.32 -6.26 11.89 33.29 0.40 -5.87 16 22 O 0.13 2.11 11.18 19.18 0.21 2.32 16 23 C -0.05 -0.70 7.38 -35.38 -0.26 -0.96 16 24 C -0.15 -2.39 6.04 -104.92 -0.63 -3.03 16 25 C -0.04 -0.53 5.66 -27.91 -0.16 -0.69 16 26 C -0.12 -1.09 5.93 -26.32 -0.16 -1.25 16 27 C -0.12 -0.85 5.88 -26.38 -0.16 -1.01 16 28 C -0.03 -0.28 6.31 -27.71 -0.17 -0.45 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 2.36 6.32 -51.93 -0.33 2.03 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.45 7.53 -51.93 -0.39 1.06 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.42 9.44 7.15 -40.82 -0.29 9.15 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -30.94 366.33 -8.26 -39.20 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.77 Total: 6.76 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -2.18 Total: 7.67 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.28 Total: -58.90 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.08 Total: -17.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.94 -8.26 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.041 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds