Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48498 * 109.47166 * 239.99309 * 3 2 1 5 5 H 1.48503 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99449 * 3 2 1 7 7 C 1.38813 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99293 * 190.81016 * 7 2 1 9 9 N 1.36932 * 120.00174 * 10.81493 * 7 2 1 10 10 C 1.47162 * 120.99293 * 31.06344 * 9 7 2 11 11 C 1.53297 * 108.41497 * 129.50753 * 10 9 7 12 12 O 1.42959 * 109.22076 * 52.28197 * 11 10 9 13 13 C 1.42965 * 114.16638 * 297.41858 * 12 11 10 14 14 C 1.47153 * 120.97974 * 211.03896 * 9 7 2 15 15 H 1.09005 * 109.68191 * 110.75141 * 14 9 7 16 16 C 1.53004 * 109.68387 * 350.23561 * 14 9 7 17 17 N 1.46500 * 109.46719 * 61.26807 * 16 14 9 18 18 C 1.34777 * 119.99652 * 180.02562 * 17 16 14 19 19 O 1.21495 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.48329 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31505 * 127.15059 * 359.97438 * 20 18 17 22 22 O 1.21432 * 111.52400 * 180.02562 * 21 20 18 23 23 C 1.33193 * 111.56770 * 359.94708 * 22 21 20 24 24 C 1.35370 * 106.64008 * 0.09791 * 23 22 21 25 25 C 1.50064 * 124.94178 * 179.86283 * 24 23 22 26 26 C 1.53547 * 108.26402 * 343.89376 * 25 24 23 27 27 C 1.53252 * 109.43996 * 49.20281 * 26 25 24 28 28 C 1.50605 * 129.60025 * 180.24954 * 23 22 21 29 29 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.68340 * 9.76447 * 10 9 7 31 31 H 1.09003 * 109.65042 * 249.23090 * 10 9 7 32 32 H 1.08998 * 109.51206 * 292.35581 * 11 10 9 33 33 H 1.09000 * 109.51520 * 172.20257 * 11 10 9 34 34 H 1.09003 * 109.51418 * 302.65633 * 13 12 11 35 35 H 1.09000 * 109.55495 * 182.53243 * 13 12 11 36 36 H 1.09001 * 109.46996 * 301.27455 * 16 14 9 37 37 H 1.08998 * 109.46960 * 181.26829 * 16 14 9 38 38 H 0.96997 * 120.00884 * 0.02562 * 17 16 14 39 39 H 1.08998 * 109.70731 * 103.59488 * 25 24 23 40 40 H 1.09001 * 109.71171 * 224.18628 * 25 24 23 41 41 H 1.09000 * 109.46001 * 169.22975 * 26 25 24 42 42 H 1.09002 * 109.46142 * 289.19637 * 26 25 24 43 43 H 1.09002 * 109.41133 * 170.06671 * 27 26 25 44 44 H 1.09004 * 109.41683 * 50.19605 * 27 26 25 45 45 H 1.08999 * 109.69450 * 282.83753 * 28 23 22 46 46 H 1.09002 * 109.69690 * 43.42434 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2104 0.1760 9 7 1.3437 -2.3776 -0.2214 10 6 0.1532 -2.4222 -1.0853 11 6 0.3389 -3.5489 -2.1081 12 8 0.6706 -4.7580 -1.4212 13 6 1.9028 -4.7015 -0.6985 14 6 1.7972 -3.6338 0.3964 15 1 1.0782 -3.9521 1.1514 16 6 3.1668 -3.4240 1.0454 17 7 3.0593 -2.4071 2.0945 18 6 4.1485 -2.0556 2.8063 19 8 5.2195 -2.5817 2.5776 20 6 4.0397 -1.0264 3.8689 21 7 2.9590 -0.3708 4.2318 22 8 3.1924 0.4084 5.1335 23 6 4.4744 0.3713 5.4931 24 6 5.0733 -0.5470 4.6991 25 6 6.5272 -0.9143 4.7553 26 6 7.2690 0.1763 5.5414 27 6 6.5276 0.4526 6.8539 28 6 5.1956 1.1543 6.5584 29 1 -0.4850 0.8400 -0.0004 30 1 0.0402 -1.4703 -1.6042 31 1 -0.7319 -2.6181 -0.4799 32 1 1.1438 -3.2879 -2.7951 33 1 -0.5864 -3.6897 -2.6668 34 1 2.7134 -4.4447 -1.3804 35 1 2.1035 -5.6713 -0.2432 36 1 3.8797 -3.0929 0.2902 37 1 3.5093 -4.3620 1.4823 38 1 2.2044 -1.9867 2.2769 39 1 6.6447 -1.8742 5.2581 40 1 6.9299 -0.9771 3.7443 41 1 8.2828 -0.1593 5.7596 42 1 7.3088 1.0891 4.9470 43 1 7.1411 1.0918 7.4889 44 1 6.3349 -0.4899 7.3666 45 1 5.3849 2.1678 6.2046 46 1 4.5893 1.1880 7.4636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051135410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = -18.399634 kcal Electronic energy + Delta-G solvation = -30309.080984 eV Core-core repulsion = 26201.829382 eV Total energy + Delta-G solvation = -4107.251602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.21511 -40.95434 -39.93429 -38.58996 -37.03485 -35.45254 -34.97902 -33.33171 -32.21668 -31.98936 -31.17162 -29.09888 -27.67397 -25.71547 -25.29812 -24.71976 -23.74107 -23.24644 -21.70090 -21.39218 -20.46937 -19.09467 -18.90930 -18.35897 -17.66783 -17.61069 -17.28371 -16.50181 -16.32535 -16.24106 -16.01693 -15.53801 -15.48560 -15.18005 -14.85800 -14.80209 -14.76639 -14.46060 -14.21328 -14.14919 -13.66668 -13.26551 -13.20106 -13.00390 -12.79772 -12.61579 -12.43373 -12.24579 -12.07290 -11.92810 -11.90484 -11.85575 -11.66108 -11.39701 -11.30309 -11.27246 -10.73551 -10.62720 -10.13843 -10.06288 -8.68761 -7.95375 -5.45249 0.03854 0.62024 1.30991 1.33520 1.37975 1.83259 1.99788 2.11474 2.36604 2.90189 3.00325 3.21634 3.37066 3.52472 3.65007 3.91656 3.94219 3.99976 4.08458 4.16873 4.22686 4.27938 4.38505 4.43944 4.47531 4.52764 4.57281 4.57495 4.62186 4.68833 4.88753 4.92944 4.96201 5.00406 5.04935 5.15945 5.19042 5.23626 5.31664 5.34919 5.43251 5.57580 5.60340 6.24507 6.29563 6.37346 6.90331 7.04093 7.05898 7.69332 8.24723 9.09072 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003923 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.344651 B = 7136.422313 C = 8279.478130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.149 3.851 11 C 0.048 3.952 12 O -0.396 6.396 13 C 0.060 3.940 14 C 0.124 3.876 15 H 0.034 0.966 16 C 0.139 3.861 17 N -0.682 5.682 18 C 0.589 3.411 19 O -0.558 6.558 20 C -0.044 4.044 21 N -0.359 5.359 22 O 0.128 5.872 23 C -0.033 4.033 24 C -0.171 4.171 25 C -0.042 4.042 26 C -0.119 4.119 27 C -0.112 4.112 28 C -0.034 4.034 29 H 0.251 0.749 30 H 0.066 0.934 31 H 0.005 0.995 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -0.820 12.387 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.024 3.976 11 C -0.030 4.030 12 O -0.314 6.314 13 C -0.018 4.018 14 C 0.017 3.983 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.332 5.332 18 C 0.373 3.627 19 O -0.437 6.437 20 C -0.201 4.201 21 N -0.060 5.060 22 O 0.053 5.947 23 C -0.097 4.097 24 C -0.176 4.176 25 C -0.080 4.080 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.072 4.072 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.249 0.751 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.123 -1.315 11.706 16.201 hybrid contribution 0.144 1.396 -0.331 1.442 sum 11.266 0.081 11.376 16.011 Atomic orbital electron populations 1.70070 1.05939 1.25669 1.55087 1.25554 0.95773 1.00144 1.01027 0.85752 0.77963 0.81585 0.77583 1.20560 1.21435 1.21997 1.19118 0.90835 0.84163 1.43155 0.91950 1.44297 1.31915 1.03531 1.53469 1.21260 0.87849 0.97208 0.91319 1.23208 1.00676 0.85068 0.94064 1.87806 1.40986 1.35617 1.67032 1.22968 0.86260 0.99443 0.93160 1.21597 0.93532 0.88609 0.94526 0.94864 1.21303 0.97106 0.90858 0.89129 1.46000 1.11785 1.40719 1.34692 1.17045 0.84313 0.80904 0.80411 1.90682 1.27917 1.55676 1.69396 1.23220 0.91946 1.02473 1.02443 1.74690 1.23720 1.04339 1.03284 1.84662 1.27719 1.45041 1.37273 1.25100 0.82939 1.00421 1.01265 1.21032 0.99328 1.00117 0.97167 1.20054 0.85900 1.00358 1.01681 1.21771 0.99904 0.97696 0.96299 1.21714 0.93874 1.01988 0.97364 1.20645 0.94990 0.98010 0.93545 0.93992 0.91541 0.97721 0.93601 0.87593 0.92866 0.86112 0.92227 0.89123 0.75134 0.89780 0.91612 0.88521 0.91575 0.86734 0.90944 0.86997 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 11.13 21.65 0.24 -52.88 16 2 C -0.03 -1.53 5.06 84.86 0.43 -1.10 16 3 Si 0.94 46.37 29.57 68.60 2.03 48.40 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 7 C -0.24 -12.77 7.11 84.03 0.60 -12.18 16 8 H 0.06 3.37 5.81 -2.91 -0.02 3.35 16 9 N -0.61 -29.16 3.03 -673.68 -2.04 -31.21 16 10 C 0.15 7.03 5.38 86.35 0.46 7.50 16 11 C 0.05 1.80 6.99 72.08 0.50 2.30 16 12 O -0.40 -14.73 10.74 -148.98 -1.60 -16.34 16 13 C 0.06 2.02 6.29 72.08 0.45 2.47 16 14 C 0.12 4.92 3.20 44.97 0.14 5.07 16 15 H 0.03 1.40 8.14 -2.38 -0.02 1.39 16 16 C 0.14 5.29 4.44 86.38 0.38 5.67 16 17 N -0.68 -28.84 3.80 -465.50 -1.77 -30.61 16 18 C 0.59 24.75 7.85 86.93 0.68 25.44 16 19 O -0.56 -24.07 16.09 -3.70 -0.06 -24.13 16 20 C -0.04 -1.74 7.19 42.55 0.31 -1.43 16 21 N -0.36 -14.45 11.89 -48.93 -0.58 -15.04 16 22 O 0.13 4.24 11.18 78.66 0.88 5.12 16 23 C -0.03 -0.85 7.38 24.99 0.18 -0.66 16 24 C -0.17 -5.28 6.04 -20.05 -0.12 -5.40 16 25 C -0.04 -1.04 5.66 29.83 0.17 -0.87 16 26 C -0.12 -1.77 5.93 30.86 0.18 -1.59 16 27 C -0.11 -1.16 5.88 30.82 0.18 -0.98 16 28 C -0.03 -0.46 6.31 29.96 0.19 -0.27 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.07 3.48 6.32 -2.39 -0.02 3.46 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.06 2.41 7.53 -2.39 -0.02 2.39 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.41 19.22 7.15 -92.71 -0.66 18.55 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.15 366.33 2.19 -67.96 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.35 Total: 24.75 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 4.75 Total: 23.96 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -4.15 Total: -129.73 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.78 Total: -35.34 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -70.15 2.19 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.564 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds