Wall clock time and date at job start Tue Mar 31 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48502 * 109.47125 * 268.93152 * 3 2 1 5 5 H 1.48497 * 109.47082 * 28.92927 * 3 2 1 6 6 H 1.48503 * 109.47505 * 148.92987 * 3 2 1 7 7 C 1.38821 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99775 * 343.37239 * 7 2 1 9 9 N 1.36934 * 119.99913 * 163.37309 * 7 2 1 10 10 C 1.47160 * 120.97905 * 329.41173 * 9 7 2 11 11 C 1.53295 * 108.38033 * 230.55452 * 10 9 7 12 12 O 1.42960 * 109.22425 * 307.69907 * 11 10 9 13 13 C 1.42960 * 114.16768 * 62.58511 * 12 11 10 14 14 C 1.47148 * 120.98357 * 149.43279 * 9 7 2 15 15 H 1.09002 * 109.68242 * 249.20652 * 14 9 7 16 16 C 1.53001 * 109.68007 * 9.72130 * 14 9 7 17 17 N 1.46502 * 109.46848 * 299.25157 * 16 14 9 18 18 C 1.34783 * 119.99884 * 180.02562 * 17 16 14 19 19 O 1.21490 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.48329 * 119.99887 * 180.02562 * 18 17 16 21 21 N 1.31495 * 127.15543 * 359.97258 * 20 18 17 22 22 O 1.21434 * 111.52488 * 180.02562 * 21 20 18 23 23 C 1.33183 * 111.56839 * 359.95540 * 22 21 20 24 24 C 1.35379 * 106.63624 * 0.08666 * 23 22 21 25 25 C 1.50068 * 124.93458 * 179.78820 * 24 23 22 26 26 C 1.53546 * 108.23012 * 343.86805 * 25 24 23 27 27 C 1.53112 * 109.50644 * 49.21627 * 26 25 24 28 28 C 1.50601 * 129.60354 * 180.08219 * 23 22 21 29 29 H 0.96997 * 120.00585 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68475 * 350.27779 * 10 9 7 31 31 H 1.09003 * 109.68212 * 110.79990 * 10 9 7 32 32 H 1.08999 * 109.51179 * 67.62863 * 11 10 9 33 33 H 1.09001 * 109.50897 * 187.72498 * 11 10 9 34 34 H 1.08999 * 109.51261 * 177.49400 * 13 12 11 35 35 H 1.08999 * 109.51557 * 57.34016 * 13 12 11 36 36 H 1.09001 * 109.47312 * 179.25604 * 16 14 9 37 37 H 1.08995 * 109.47319 * 59.24987 * 16 14 9 38 38 H 0.97003 * 120.00232 * 359.97438 * 17 16 14 39 39 H 1.09008 * 109.71035 * 103.57311 * 25 24 23 40 40 H 1.08997 * 109.70683 * 224.15975 * 25 24 23 41 41 H 1.08995 * 109.47813 * 289.19724 * 26 25 24 42 42 H 1.09006 * 109.46054 * 169.21652 * 26 25 24 43 43 H 1.09005 * 109.42877 * 170.06734 * 27 26 25 44 44 H 1.08994 * 109.42851 * 50.22476 * 27 26 25 45 45 H 1.08995 * 109.69611 * 43.58109 * 28 23 22 46 46 H 1.09003 * 109.72749 * 283.01664 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5203 2.0334 -1.3998 5 1 1.4365 2.6591 0.6772 6 1 3.5363 1.4469 0.7226 7 6 2.0103 -1.2022 0.0005 8 1 1.5042 -2.1178 0.2686 9 7 3.3367 -1.2271 -0.3388 10 6 3.8916 -0.2583 -1.2975 11 6 4.6796 -1.0294 -2.3626 12 8 5.6182 -1.8948 -1.7192 13 6 5.0197 -2.8989 -0.8962 14 6 4.2491 -2.2236 0.2441 15 1 4.9487 -1.7304 0.9190 16 6 3.4433 -3.2723 1.0134 17 7 2.7029 -2.6210 2.0968 18 6 1.9192 -3.3535 2.9128 19 8 1.8273 -4.5539 2.7502 20 6 1.1691 -2.6939 4.0094 21 7 1.1655 -1.4141 4.3115 22 8 0.4502 -1.1835 5.2653 23 6 -0.1230 -2.2934 5.7272 24 6 0.3126 -3.3089 4.9450 25 6 -0.0783 -4.7485 5.1089 26 6 -0.6937 -4.9232 6.5048 27 6 -1.7535 -3.8425 6.7352 28 6 -1.0750 -2.4741 6.8801 29 1 -0.4851 0.8400 -0.0004 30 1 3.0809 0.2960 -1.7702 31 1 4.5551 0.4332 -0.7782 32 1 3.9922 -1.6221 -2.9660 33 1 5.2116 -0.3255 -3.0025 34 1 5.7971 -3.5400 -0.4806 35 1 4.3335 -3.4985 -1.4943 36 1 4.1213 -4.0159 1.4325 37 1 2.7423 -3.7604 0.3364 38 1 2.7772 -1.6626 2.2273 39 1 -0.8098 -5.0198 4.3477 40 1 0.8036 -5.3819 5.0136 41 1 0.0870 -4.8331 7.2600 42 1 -1.1569 -5.9073 6.5769 43 1 -2.3107 -4.0690 7.6443 44 1 -2.4383 -3.8196 5.8875 45 1 -1.8283 -1.6866 6.8612 46 1 -0.5255 -2.4342 7.8206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051135411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:34 Heat of formation + Delta-G solvation = 8.411105 kcal Electronic energy + Delta-G solvation = -30301.987518 eV Core-core repulsion = 26195.898517 eV Total energy + Delta-G solvation = -4106.089001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.81965 -39.40318 -38.51313 -37.64620 -35.50416 -33.75430 -33.59266 -31.74924 -31.06467 -30.91186 -30.12126 -27.58855 -26.13392 -24.55139 -23.58690 -23.32207 -22.71498 -22.04271 -20.31604 -19.91638 -19.21190 -17.65331 -17.49371 -16.78810 -16.17421 -16.06757 -15.83303 -15.13241 -15.06713 -14.96551 -14.48478 -14.18259 -14.03477 -14.00025 -13.87035 -13.69429 -13.39410 -13.11409 -12.87494 -12.56836 -12.41717 -12.20076 -11.89053 -11.62232 -11.24766 -11.15344 -11.08631 -11.04579 -10.79832 -10.73541 -10.55287 -10.34276 -9.94289 -9.86776 -9.77467 -9.62162 -9.32208 -8.93531 -8.70334 -8.38029 -7.03006 -6.03741 -3.47636 1.46550 1.91576 3.06278 3.23335 3.42140 3.43177 3.45107 3.70831 4.25259 4.32356 4.42903 4.56573 4.64314 4.69967 4.70318 4.98845 5.07141 5.19855 5.22473 5.33314 5.39297 5.40671 5.50242 5.57601 5.63080 5.70763 5.74989 5.78698 5.84409 5.87858 5.89149 5.89450 5.98466 6.03376 6.08419 6.15452 6.19608 6.33326 6.34148 6.49350 6.68750 6.94729 7.57702 7.80095 8.00663 8.23413 8.36025 8.65213 8.78041 9.58507 9.94379 11.10408 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.003830 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.201149 B = 7308.620507 C = 8523.327787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.034 3.966 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.272 4.272 8 H 0.095 0.905 9 N -0.607 5.607 10 C 0.091 3.909 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.055 3.945 14 C 0.127 3.873 15 H 0.047 0.953 16 C 0.136 3.864 17 N -0.676 5.676 18 C 0.596 3.404 19 O -0.544 6.544 20 C -0.008 4.008 21 N -0.322 5.322 22 O 0.127 5.873 23 C -0.051 4.051 24 C -0.153 4.153 25 C -0.043 4.043 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.032 4.032 29 H 0.264 0.736 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -6.781 11.507 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.166 4.166 3 Si 0.713 3.287 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.399 4.399 8 H 0.112 0.888 9 N -0.334 5.334 10 C -0.034 4.034 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.024 4.024 14 C 0.020 3.980 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.327 5.327 18 C 0.379 3.621 19 O -0.422 6.422 20 C -0.167 4.167 21 N -0.023 5.023 22 O 0.053 5.947 23 C -0.115 4.115 24 C -0.158 4.158 25 C -0.080 4.080 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.070 4.070 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.257 0.743 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.617 -6.465 10.781 12.674 hybrid contribution -0.186 1.060 -0.007 1.076 sum 1.431 -5.405 10.774 12.138 Atomic orbital electron populations 1.69783 1.05708 1.26679 1.51894 1.25319 0.95155 0.97509 0.98659 0.86993 0.79760 0.84658 0.77250 1.21507 1.23023 1.19574 1.18951 0.82622 0.94751 1.43619 0.88777 1.44424 1.06280 1.35477 1.47176 1.22060 0.97298 0.92780 0.91301 1.23067 0.92130 0.93153 0.94837 1.87825 1.33425 1.45653 1.63701 1.22897 0.97163 0.89956 0.92342 1.21460 0.92095 0.90819 0.93591 0.93577 1.21226 0.94701 0.94373 0.88496 1.45848 1.44760 1.12728 1.29408 1.16766 0.79115 0.85856 0.80318 1.90710 1.65319 1.13685 1.72476 1.23028 1.02882 0.90101 1.00666 1.74666 1.09961 1.17003 1.00675 1.84706 1.43833 1.32658 1.33546 1.24047 1.01336 0.85175 1.00959 1.20592 1.00321 0.98564 0.96297 1.19962 1.01600 0.89438 0.97010 1.21710 0.98351 0.98986 0.96904 1.21650 0.98116 0.92937 1.02958 1.20192 0.95205 0.99129 0.92470 0.92615 0.89994 0.94801 0.92976 0.89718 0.89309 0.92837 0.91638 0.90709 0.74306 0.89928 0.89400 0.91523 0.90822 0.90306 0.90935 0.89039 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.97 55.49 0.78 -26.11 16 2 C 0.03 0.95 5.29 -17.43 -0.09 0.86 16 3 Si 0.88 21.96 24.28 -169.99 -4.13 17.83 16 4 H -0.29 -6.87 6.54 56.52 0.37 -6.50 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 7 C -0.27 -7.11 7.54 -15.06 -0.11 -7.23 16 8 H 0.09 2.69 5.98 -52.49 -0.31 2.38 16 9 N -0.61 -13.71 2.78 -164.30 -0.46 -14.16 16 10 C 0.09 1.93 4.38 -3.53 -0.02 1.91 16 11 C 0.05 0.83 6.98 37.31 0.26 1.09 16 12 O -0.39 -6.99 10.74 -35.23 -0.38 -7.37 16 13 C 0.06 0.91 6.29 37.31 0.23 1.15 16 14 C 0.13 2.40 3.21 -67.42 -0.22 2.19 16 15 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.14 2.53 4.44 -4.04 -0.02 2.52 16 17 N -0.68 -13.91 3.76 -61.09 -0.23 -14.14 16 18 C 0.60 12.39 7.85 -12.10 -0.09 12.29 16 19 O -0.54 -11.76 16.08 5.37 0.09 -11.67 16 20 C -0.01 -0.16 7.19 -82.83 -0.60 -0.75 16 21 N -0.32 -6.38 11.89 33.29 0.40 -5.99 16 22 O 0.13 2.14 11.18 19.20 0.21 2.36 16 23 C -0.05 -0.72 7.38 -35.38 -0.26 -0.98 16 24 C -0.15 -2.44 6.04 -104.91 -0.63 -3.08 16 25 C -0.04 -0.56 5.66 -27.91 -0.16 -0.71 16 26 C -0.12 -1.09 5.92 -26.39 -0.16 -1.25 16 27 C -0.12 -0.95 5.88 -26.45 -0.16 -1.10 16 28 C -0.03 -0.28 6.31 -27.71 -0.17 -0.46 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.08 1.87 4.89 -51.93 -0.25 1.61 16 31 H 0.03 0.73 6.81 -51.93 -0.35 0.38 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.52 7.56 -51.93 -0.39 1.13 16 38 H 0.42 9.21 7.10 -40.82 -0.29 8.92 16 39 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 40 H 0.09 1.21 7.83 -51.93 -0.41 0.80 16 41 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -32.47 359.62 -7.19 -39.66 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.70 Total: 7.72 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.19 Total: 6.45 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.48 Total: -60.40 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.08 Total: -16.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.13 Total: 17.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.47 -7.19 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.072 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds