Wall clock time and date at job start Tue Mar 31 2020 18:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48502 * 109.47125 * 268.93152 * 3 2 1 5 5 H 1.48497 * 109.47082 * 28.92927 * 3 2 1 6 6 H 1.48503 * 109.47505 * 148.92987 * 3 2 1 7 7 C 1.38821 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99775 * 343.37239 * 7 2 1 9 9 N 1.36934 * 119.99913 * 163.37309 * 7 2 1 10 10 C 1.47160 * 120.97905 * 329.41173 * 9 7 2 11 11 C 1.53295 * 108.38033 * 230.55452 * 10 9 7 12 12 O 1.42960 * 109.22425 * 307.69907 * 11 10 9 13 13 C 1.42960 * 114.16768 * 62.58511 * 12 11 10 14 14 C 1.47148 * 120.98357 * 149.43279 * 9 7 2 15 15 H 1.09002 * 109.68242 * 249.20652 * 14 9 7 16 16 C 1.53001 * 109.68007 * 9.72130 * 14 9 7 17 17 N 1.46502 * 109.46848 * 299.25157 * 16 14 9 18 18 C 1.34783 * 119.99884 * 180.02562 * 17 16 14 19 19 O 1.21490 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.48329 * 119.99887 * 180.02562 * 18 17 16 21 21 N 1.31495 * 127.15543 * 359.97258 * 20 18 17 22 22 O 1.21434 * 111.52488 * 180.02562 * 21 20 18 23 23 C 1.33183 * 111.56839 * 359.95540 * 22 21 20 24 24 C 1.35379 * 106.63624 * 0.08666 * 23 22 21 25 25 C 1.50068 * 124.93458 * 179.78820 * 24 23 22 26 26 C 1.53546 * 108.23012 * 343.86805 * 25 24 23 27 27 C 1.53112 * 109.50644 * 49.21627 * 26 25 24 28 28 C 1.50601 * 129.60354 * 180.08219 * 23 22 21 29 29 H 0.96997 * 120.00585 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68475 * 350.27779 * 10 9 7 31 31 H 1.09003 * 109.68212 * 110.79990 * 10 9 7 32 32 H 1.08999 * 109.51179 * 67.62863 * 11 10 9 33 33 H 1.09001 * 109.50897 * 187.72498 * 11 10 9 34 34 H 1.08999 * 109.51261 * 177.49400 * 13 12 11 35 35 H 1.08999 * 109.51557 * 57.34016 * 13 12 11 36 36 H 1.09001 * 109.47312 * 179.25604 * 16 14 9 37 37 H 1.08995 * 109.47319 * 59.24987 * 16 14 9 38 38 H 0.97003 * 120.00232 * 359.97438 * 17 16 14 39 39 H 1.09008 * 109.71035 * 103.57311 * 25 24 23 40 40 H 1.08997 * 109.70683 * 224.15975 * 25 24 23 41 41 H 1.08995 * 109.47813 * 289.19724 * 26 25 24 42 42 H 1.09006 * 109.46054 * 169.21652 * 26 25 24 43 43 H 1.09005 * 109.42877 * 170.06734 * 27 26 25 44 44 H 1.08994 * 109.42851 * 50.22476 * 27 26 25 45 45 H 1.08995 * 109.69611 * 43.58109 * 28 23 22 46 46 H 1.09003 * 109.72749 * 283.01664 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5203 2.0334 -1.3998 5 1 1.4365 2.6591 0.6772 6 1 3.5363 1.4469 0.7226 7 6 2.0103 -1.2022 0.0005 8 1 1.5042 -2.1178 0.2686 9 7 3.3367 -1.2271 -0.3388 10 6 3.8916 -0.2583 -1.2975 11 6 4.6796 -1.0294 -2.3626 12 8 5.6182 -1.8948 -1.7192 13 6 5.0197 -2.8989 -0.8962 14 6 4.2491 -2.2236 0.2441 15 1 4.9487 -1.7304 0.9190 16 6 3.4433 -3.2723 1.0134 17 7 2.7029 -2.6210 2.0968 18 6 1.9192 -3.3535 2.9128 19 8 1.8273 -4.5539 2.7502 20 6 1.1691 -2.6939 4.0094 21 7 1.1655 -1.4141 4.3115 22 8 0.4502 -1.1835 5.2653 23 6 -0.1230 -2.2934 5.7272 24 6 0.3126 -3.3089 4.9450 25 6 -0.0783 -4.7485 5.1089 26 6 -0.6937 -4.9232 6.5048 27 6 -1.7535 -3.8425 6.7352 28 6 -1.0750 -2.4741 6.8801 29 1 -0.4851 0.8400 -0.0004 30 1 3.0809 0.2960 -1.7702 31 1 4.5551 0.4332 -0.7782 32 1 3.9922 -1.6221 -2.9660 33 1 5.2116 -0.3255 -3.0025 34 1 5.7971 -3.5400 -0.4806 35 1 4.3335 -3.4985 -1.4943 36 1 4.1213 -4.0159 1.4325 37 1 2.7423 -3.7604 0.3364 38 1 2.7772 -1.6626 2.2273 39 1 -0.8098 -5.0198 4.3477 40 1 0.8036 -5.3819 5.0136 41 1 0.0870 -4.8331 7.2600 42 1 -1.1569 -5.9073 6.5769 43 1 -2.3107 -4.0690 7.6443 44 1 -2.4383 -3.8196 5.8875 45 1 -1.8283 -1.6866 6.8612 46 1 -0.5255 -2.4342 7.8206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051135411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:33 Heat of formation + Delta-G solvation = -14.934892 kcal Electronic energy + Delta-G solvation = -30302.999877 eV Core-core repulsion = 26195.898517 eV Total energy + Delta-G solvation = -4107.101360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.17941 -41.01621 -40.06384 -38.57591 -37.11971 -35.48086 -34.95263 -33.65291 -32.64479 -31.96612 -31.15922 -29.33807 -27.66640 -25.70439 -25.28112 -24.76732 -23.74939 -23.53640 -21.75883 -21.48364 -20.45572 -19.11110 -18.87317 -18.44979 -17.80744 -17.59984 -17.32762 -16.83728 -16.57359 -16.09949 -15.99195 -15.73494 -15.60718 -15.32013 -14.84059 -14.80391 -14.75740 -14.50281 -14.21736 -14.15831 -13.95643 -13.53339 -13.27969 -13.22161 -12.90576 -12.45942 -12.38705 -12.36540 -12.10627 -11.88869 -11.84084 -11.67435 -11.61928 -11.43626 -11.29461 -11.25346 -11.06555 -10.56692 -10.11105 -10.06752 -8.91964 -8.19112 -5.58163 0.07490 0.65093 1.22728 1.36584 1.42887 1.83687 2.01070 2.16929 2.35679 2.79544 2.95263 3.00598 3.16455 3.53617 3.67898 3.83388 3.95623 4.01679 4.03145 4.13092 4.16819 4.23355 4.26640 4.34540 4.40450 4.42885 4.49120 4.53005 4.58942 4.63406 4.67237 4.86557 4.89819 4.91009 4.94518 5.01958 5.13030 5.17421 5.20862 5.32683 5.36250 5.45017 5.79462 6.11332 6.16373 6.35252 6.78636 6.92630 7.08537 7.51836 7.92158 8.99062 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.003830 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.201149 B = 7308.620507 C = 8523.327787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.021 4.021 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.318 1.318 6 H -0.265 1.265 7 C -0.238 4.238 8 H 0.062 0.938 9 N -0.621 5.621 10 C 0.084 3.916 11 C 0.054 3.946 12 O -0.388 6.388 13 C 0.060 3.940 14 C 0.126 3.874 15 H 0.054 0.946 16 C 0.138 3.862 17 N -0.681 5.681 18 C 0.591 3.409 19 O -0.560 6.560 20 C -0.042 4.042 21 N -0.358 5.358 22 O 0.128 5.872 23 C -0.032 4.032 24 C -0.172 4.172 25 C -0.043 4.043 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.032 4.032 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.410 0.590 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -7.277 12.989 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.217 4.217 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.247 1.247 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.080 0.920 9 N -0.348 5.348 10 C -0.041 4.041 11 C -0.023 4.023 12 O -0.306 6.306 13 C -0.019 4.019 14 C 0.020 3.980 15 H 0.071 0.929 16 C 0.015 3.985 17 N -0.331 5.331 18 C 0.375 3.625 19 O -0.439 6.439 20 C -0.199 4.199 21 N -0.060 5.060 22 O 0.053 5.947 23 C -0.097 4.097 24 C -0.177 4.177 25 C -0.081 4.081 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.070 4.070 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.767 -6.984 12.229 14.352 hybrid contribution -0.524 1.113 -0.414 1.298 sum 2.242 -5.871 11.815 13.383 Atomic orbital electron populations 1.69918 1.07350 1.26899 1.55401 1.25844 0.95578 1.00437 0.99861 0.86080 0.78320 0.80887 0.77867 1.19696 1.24702 1.18991 1.18715 0.84073 0.93202 1.40711 0.92027 1.44571 1.05593 1.36511 1.48171 1.22134 0.97083 0.92937 0.91916 1.23024 0.92187 0.93359 0.93776 1.87840 1.33395 1.45736 1.63669 1.22990 0.98045 0.89684 0.91153 1.21673 0.91566 0.90061 0.94663 0.92875 1.21305 0.94508 0.94796 0.87901 1.45920 1.45083 1.12238 1.29835 1.17041 0.78969 0.85837 0.80642 1.90672 1.65902 1.14197 1.73160 1.23172 1.04415 0.90783 1.01508 1.74631 1.11678 1.17446 1.02198 1.84646 1.43425 1.33824 1.32776 1.25077 1.00146 0.83388 1.01042 1.21015 1.00255 1.00486 0.95975 1.20052 1.00933 0.87373 0.99713 1.21718 0.98892 1.00657 0.93942 1.21713 0.97586 0.91706 1.04364 1.20627 0.94737 1.00416 0.91219 0.93190 0.91777 0.94568 0.93134 0.86430 0.85459 0.92953 0.88650 0.92942 0.75330 0.91206 0.90852 0.90446 0.88755 0.86485 0.92082 0.87117 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.97 21.65 0.30 -59.12 16 2 C -0.02 -1.23 5.29 84.86 0.45 -0.78 16 3 Si 0.94 46.39 24.28 68.60 1.67 48.05 16 4 H -0.27 -12.47 6.54 99.48 0.65 -11.82 16 5 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 6 H -0.27 -12.67 6.64 99.48 0.66 -12.01 16 7 C -0.24 -12.83 7.54 84.04 0.63 -12.20 16 8 H 0.06 3.72 5.98 -2.91 -0.02 3.70 16 9 N -0.62 -27.95 2.78 -673.71 -1.87 -29.83 16 10 C 0.08 3.45 4.38 86.35 0.38 3.83 16 11 C 0.05 1.80 6.98 72.08 0.50 2.31 16 12 O -0.39 -12.75 10.74 -148.98 -1.60 -14.35 16 13 C 0.06 1.82 6.29 72.08 0.45 2.27 16 14 C 0.13 4.63 3.21 44.97 0.14 4.78 16 15 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.14 5.19 4.44 86.38 0.38 5.58 16 17 N -0.68 -29.15 3.76 -465.50 -1.75 -30.90 16 18 C 0.59 25.84 7.85 86.93 0.68 26.52 16 19 O -0.56 -25.30 16.08 -3.68 -0.06 -25.36 16 20 C -0.04 -1.73 7.19 42.55 0.31 -1.42 16 21 N -0.36 -14.86 11.89 -48.95 -0.58 -15.44 16 22 O 0.13 4.40 11.18 78.74 0.88 5.28 16 23 C -0.03 -0.87 7.38 24.99 0.18 -0.69 16 24 C -0.17 -5.61 6.04 -20.05 -0.12 -5.73 16 25 C -0.04 -1.13 5.66 29.83 0.17 -0.96 16 26 C -0.11 -1.77 5.92 30.82 0.18 -1.59 16 27 C -0.12 -1.45 5.88 30.77 0.18 -1.27 16 28 C -0.03 -0.47 6.31 29.96 0.19 -0.28 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.06 2.86 4.89 -2.39 -0.01 2.85 16 31 H 0.04 1.48 6.81 -2.39 -0.02 1.47 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.05 2.20 7.56 -2.39 -0.02 2.18 16 38 H 0.41 18.88 7.10 -92.71 -0.66 18.22 16 39 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.07 2.09 7.83 -2.39 -0.02 2.08 16 41 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 42 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -75.12 359.62 1.95 -73.17 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.25 Total: 28.13 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 4.72 Total: 20.36 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -3.91 Total: -135.29 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.78 Total: -34.42 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.05 kcal Total: -75.12 1.95 -73.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.232 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds