Wall clock time and date at job start Tue Mar 31 2020 18:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48496 * 109.46904 * 269.99539 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 160.13234 * 7 2 1 9 9 N 1.36933 * 120.00031 * 340.41436 * 7 2 1 10 10 C 1.50170 * 120.53573 * 336.76561 * 9 7 2 11 11 C 1.46242 * 107.53356 * 109.56692 * 10 9 7 12 12 C 1.52519 * 114.27692 * 58.40698 * 11 10 9 13 13 C 1.50120 * 105.41545 * 270.59397 * 12 11 10 14 14 H 1.08997 * 109.21162 * 337.33965 * 13 12 11 15 15 N 1.46497 * 109.20779 * 217.98295 * 13 12 11 16 16 C 1.34780 * 119.99737 * 155.00088 * 15 13 12 17 17 O 1.21492 * 120.00433 * 359.97438 * 16 15 13 18 18 C 1.48342 * 119.99836 * 179.97438 * 16 15 13 19 19 N 1.31599 * 127.15415 * 359.68507 * 18 16 15 20 20 O 1.21569 * 111.54275 * 179.83872 * 19 18 16 21 21 C 1.32812 * 111.51609 * 0.39556 * 20 19 18 22 22 C 1.35708 * 106.70472 * 359.80409 * 21 20 19 23 23 C 1.50034 * 123.86415 * 179.82329 * 22 21 20 24 24 O 1.43623 * 107.82470 * 345.27273 * 23 22 21 25 25 C 1.42994 * 114.38775 * 50.01810 * 24 23 22 26 26 C 1.50672 * 130.82695 * 179.83518 * 21 20 19 27 27 C 1.54844 * 110.81897 * 97.68509 * 13 12 11 28 28 C 1.43426 * 120.53767 * 156.48703 * 9 7 2 29 29 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.84452 * 229.07447 * 10 9 7 31 31 H 1.09000 * 109.84581 * 350.05934 * 10 9 7 32 32 H 1.08997 * 108.51728 * 179.64998 * 11 10 9 33 33 H 1.08999 * 108.52073 * 297.32390 * 11 10 9 34 34 H 1.09004 * 110.24820 * 29.56681 * 12 11 10 35 35 H 1.08997 * 110.24898 * 151.47728 * 12 11 10 36 36 H 0.96999 * 120.00226 * 334.99786 * 15 13 12 37 37 H 1.08994 * 109.78823 * 104.85136 * 23 22 21 38 38 H 1.09000 * 109.79074 * 225.69593 * 23 22 21 39 39 H 1.09005 * 109.39732 * 49.72517 * 25 24 23 40 40 H 1.08996 * 109.39826 * 169.54810 * 25 24 23 41 41 H 1.09004 * 109.82388 * 44.53169 * 26 21 20 42 42 H 1.09004 * 109.87387 * 283.63607 * 26 21 20 43 43 H 1.08999 * 109.35974 * 81.33846 * 27 13 12 44 44 H 1.08993 * 109.36178 * 200.92888 * 27 13 12 45 45 H 1.09002 * 108.16374 * 33.30193 * 28 9 7 46 46 H 1.08998 * 108.16060 * 149.87454 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0421 -1.2300 -0.3173 9 7 1.3851 -2.3536 0.3986 10 6 0.1853 -2.2979 1.3000 11 6 -0.9806 -2.6839 0.5060 12 6 -0.8819 -4.0715 -0.1193 13 6 -0.2302 -3.8618 -1.4552 14 1 -0.3811 -2.8291 -1.7698 15 7 -0.8440 -4.7592 -2.4371 16 6 -0.8192 -4.4429 -3.7471 17 8 -0.2883 -3.4134 -4.1136 18 6 -1.4403 -5.3518 -4.7414 19 7 -2.0437 -6.4969 -4.5035 20 8 -2.4522 -7.0075 -5.5283 21 6 -2.1632 -6.2654 -6.5911 22 6 -1.5013 -5.1720 -6.1351 23 6 -0.9894 -4.0747 -7.0211 24 8 -1.0116 -4.5557 -8.3742 25 6 -2.2543 -5.1401 -8.7728 26 6 -2.4556 -6.4824 -8.0532 27 6 1.2885 -4.1542 -1.3787 28 6 1.8619 -3.6320 -0.0435 29 1 -0.4850 0.8400 -0.0004 30 1 0.3138 -2.9922 2.1304 31 1 0.0550 -1.2848 1.6804 32 1 -1.8613 -2.6549 1.1476 33 1 -1.1118 -1.9547 -0.2935 34 1 -0.2672 -4.7225 0.5024 35 1 -1.8762 -4.5000 -0.2452 36 1 -1.2682 -5.5810 -2.1445 37 1 -1.6307 -3.1980 -6.9306 38 1 0.0311 -3.8172 -6.7376 39 1 -3.0707 -4.4652 -8.5155 40 1 -2.2473 -5.3057 -9.8501 41 1 -3.4851 -6.8183 -8.1784 42 1 -1.7719 -7.2268 -8.4613 43 1 1.4534 -5.2294 -1.4487 44 1 1.7941 -3.6585 -2.2073 45 1 2.9457 -3.5741 -0.1445 46 1 1.6371 -4.3649 0.7313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052949249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:53 Heat of formation + Delta-G solvation = 17.507276 kcal Electronic energy + Delta-G solvation = -29873.944964 eV Core-core repulsion = 25768.250403 eV Total energy + Delta-G solvation = -4105.694562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.33444 -39.68528 -39.15242 -37.70818 -34.72463 -34.24826 -33.50363 -32.28963 -31.59404 -30.92138 -29.85573 -26.87773 -26.22628 -24.84129 -24.33979 -23.84154 -22.60599 -21.26500 -20.35261 -19.66868 -19.14285 -18.14238 -17.98074 -16.94990 -16.70995 -16.29650 -15.81395 -15.55822 -15.17763 -15.08788 -14.60850 -14.34017 -14.04776 -13.91014 -13.77163 -13.63341 -13.20388 -13.13762 -12.48474 -12.25386 -12.09271 -11.91049 -11.73273 -11.51461 -11.46244 -11.24671 -10.78241 -10.69806 -10.54932 -10.41129 -10.30751 -10.18368 -10.09989 -9.82896 -9.70260 -9.50032 -9.42605 -9.34718 -8.66658 -8.36787 -6.69293 -5.75774 -3.14324 0.92311 1.40937 2.51821 3.12234 3.26018 3.36237 3.42262 3.49377 3.51665 3.89647 4.15545 4.37886 4.50728 4.55413 4.66720 4.75778 5.01047 5.08924 5.22678 5.25195 5.34610 5.38077 5.40977 5.47374 5.53914 5.69719 5.78073 5.85617 5.99738 6.25243 6.28308 6.40334 6.45710 6.67360 6.68998 6.80880 6.88568 6.93173 6.99039 7.07277 7.21335 7.58877 7.61214 7.77582 7.84237 7.97956 8.32186 8.46050 9.22512 9.89967 10.42208 11.32005 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.003021 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.581605 B = 9267.575302 C =10307.790159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.155 3.845 14 H 0.106 0.894 15 N -0.708 5.708 16 C 0.588 3.412 17 O -0.510 6.510 18 C 0.005 3.995 19 N -0.338 5.338 20 O 0.129 5.871 21 C -0.034 4.034 22 C -0.199 4.199 23 C 0.139 3.861 24 O -0.375 6.375 25 C 0.060 3.940 26 C -0.068 4.068 27 C -0.152 4.152 28 C 0.162 3.838 29 H 0.252 0.748 30 H 0.007 0.993 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.397 0.603 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.034 0.966 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 -14.507 -13.482 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.124 0.876 15 N -0.359 5.359 16 C 0.371 3.629 17 O -0.383 6.383 18 C -0.154 4.154 19 N -0.043 5.043 20 O 0.058 5.942 21 C -0.099 4.099 22 C -0.204 4.204 23 C 0.063 3.937 24 O -0.293 6.293 25 C -0.018 4.018 26 C -0.106 4.106 27 C -0.194 4.194 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.753 -14.197 -12.650 20.535 hybrid contribution 0.033 0.722 -0.292 0.779 sum -7.720 -13.476 -12.942 20.216 Atomic orbital electron populations 1.69954 1.05098 1.25228 1.54276 1.24886 0.95225 0.98227 1.01142 0.86334 0.79184 0.83854 0.77645 1.21525 1.21688 1.20665 1.19197 0.93727 0.85281 1.39634 0.91482 1.44296 1.33726 1.00894 1.51982 1.20177 0.85165 1.00625 0.89914 1.20934 0.98582 0.94822 1.02483 1.21373 0.98842 0.99971 0.95815 1.21433 0.92340 0.94634 0.86307 0.87604 1.46446 1.57763 1.25757 1.05913 1.16877 0.79799 0.84351 0.81922 1.90852 1.44036 1.24116 1.79320 1.23145 1.02922 0.94774 0.94557 1.74659 1.13546 1.09936 1.06112 1.84629 1.57454 1.41537 1.10562 1.23982 1.00876 0.92199 0.92831 1.21387 1.05090 1.00661 0.93311 1.21026 1.03687 0.91278 0.77737 1.88141 1.34236 1.78531 1.28355 1.22737 0.87463 0.91742 0.99824 1.21047 1.04497 1.01144 0.83893 1.23253 0.94956 0.98704 1.02492 1.20250 0.96491 0.88286 0.91758 0.93775 0.97501 0.89042 0.95040 0.87896 0.91681 0.92747 0.76870 0.90171 0.85864 0.92019 0.86929 0.87745 0.87738 0.93578 0.92344 0.94752 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 9.43 55.49 0.52 -24.52 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.84 29.60 -169.99 -5.03 16.81 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.77 9.62 -15.06 -0.14 -6.92 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -14.36 2.61 -175.40 -0.46 -14.82 16 10 C 0.16 3.78 5.25 -5.20 -0.03 3.75 16 11 C -0.13 -2.73 5.02 -30.19 -0.15 -2.88 16 12 C -0.12 -2.19 5.33 -28.41 -0.15 -2.34 16 13 C 0.15 3.02 2.22 -68.39 -0.15 2.87 16 14 H 0.11 2.59 6.26 -51.93 -0.33 2.27 16 15 N -0.71 -11.98 4.97 -55.04 -0.27 -12.26 16 16 C 0.59 10.60 7.80 -12.10 -0.09 10.50 16 17 O -0.51 -10.86 15.96 5.37 0.09 -10.78 16 18 C 0.00 0.07 7.18 -82.89 -0.60 -0.53 16 19 N -0.34 -4.74 11.90 33.26 0.40 -4.34 16 20 O 0.13 1.53 11.17 20.05 0.22 1.75 16 21 C -0.03 -0.36 7.50 -35.23 -0.26 -0.62 16 22 C -0.20 -2.62 6.15 -104.94 -0.65 -3.27 16 23 C 0.14 1.71 6.67 35.68 0.24 1.95 16 24 O -0.37 -3.99 10.76 -35.23 -0.38 -4.37 16 25 C 0.06 0.39 6.77 37.49 0.25 0.64 16 26 C -0.07 -0.41 6.56 -27.57 -0.18 -0.59 16 27 C -0.15 -3.00 5.97 -25.02 -0.15 -3.15 16 28 C 0.16 3.41 5.13 -4.93 -0.03 3.39 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.01 0.15 8.13 -51.93 -0.42 -0.28 16 31 H 0.09 2.35 6.05 -51.93 -0.31 2.04 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 2.57 5.29 -51.93 -0.27 2.29 16 34 H 0.06 1.11 6.28 -51.93 -0.33 0.79 16 35 H 0.05 0.86 7.86 -51.93 -0.41 0.46 16 36 H 0.40 5.78 8.25 -40.82 -0.34 5.44 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.65 8.00 -51.93 -0.42 1.24 16 39 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 46 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -31.16 362.06 -8.16 -39.32 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.52 Total: 4.94 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.18 Total: 2.81 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.19 Total: -55.94 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.07 Total: -13.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.16 -8.16 -39.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052949249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.824 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds