Wall clock time and date at job start Tue Mar 31 2020 18:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47384 * 275.24108 * 3 2 1 5 5 H 1.48506 * 109.47371 * 35.24068 * 3 2 1 6 6 H 1.48500 * 109.47381 * 155.24078 * 3 2 1 7 7 C 1.38817 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 335.08722 * 7 2 1 9 9 N 1.36931 * 119.99864 * 155.09244 * 7 2 1 10 10 C 1.47743 * 121.65865 * 327.79606 * 9 7 2 11 11 C 1.52974 * 108.82545 * 275.73086 * 10 9 7 12 12 N 1.47656 * 108.91648 * 305.17797 * 11 10 9 13 13 C 1.36133 * 116.58056 * 97.49459 * 12 11 10 14 14 O 1.21282 * 120.46350 * 356.91346 * 13 12 11 15 15 C 1.50701 * 119.07369 * 176.88373 * 13 12 11 16 16 C 1.52976 * 109.53182 * 115.52707 * 15 13 12 17 17 N 1.47757 * 108.82597 * 306.58093 * 16 15 13 18 18 C 1.34776 * 121.66288 * 270.98707 * 17 16 15 19 19 O 1.21280 * 120.00375 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99495 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.46798 * 179.97438 * 20 18 17 22 22 C 1.34508 * 125.79218 * 89.99937 * 21 20 18 23 23 C 1.41384 * 106.84557 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83598 * 0.02562 * 23 22 21 25 25 O 1.34303 * 125.78839 * 270.02324 * 21 20 18 26 26 C 1.47752 * 116.68135 * 91.26283 * 17 16 15 27 27 C 1.47760 * 121.65997 * 147.82618 * 9 7 2 28 28 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58176 * 155.92543 * 10 9 7 30 30 H 1.09007 * 109.57675 * 35.52995 * 10 9 7 31 31 H 1.09005 * 109.56994 * 185.34700 * 11 10 9 32 32 H 1.09000 * 109.56608 * 65.00104 * 11 10 9 33 33 H 0.97006 * 121.70477 * 277.47642 * 12 11 10 34 34 H 1.08998 * 109.46008 * 355.51360 * 15 13 12 35 35 H 1.08998 * 109.46607 * 235.54734 * 15 13 12 36 36 H 1.09003 * 109.57618 * 186.77761 * 16 15 13 37 37 H 1.08996 * 109.68622 * 66.45128 * 16 15 13 38 38 H 1.08995 * 109.47322 * 60.00014 * 20 18 17 39 39 H 1.09000 * 109.46990 * 299.99766 * 20 18 17 40 40 H 1.08008 * 126.57550 * 359.97438 * 22 21 20 41 41 H 1.07999 * 126.58190 * 180.02562 * 23 22 21 42 42 H 1.07997 * 125.78569 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.58066 * 351.92302 * 26 17 16 44 44 H 1.08999 * 109.57796 * 112.32771 * 26 17 16 45 45 H 1.09002 * 109.58774 * 161.69792 * 27 9 7 46 46 H 1.09005 * 109.58236 * 281.97356 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 2.3869 2.1103 -1.3942 5 1 1.5074 2.6182 0.8079 6 1 3.5987 1.4107 0.5863 7 6 2.0102 -1.2022 -0.0005 8 1 1.5456 -2.0941 0.3930 9 7 3.2840 -1.2571 -0.5000 10 6 3.7180 -0.3896 -1.6144 11 6 3.3175 -1.0468 -2.9364 12 7 3.8736 -2.4140 -2.9791 13 6 3.0334 -3.4247 -2.6245 14 8 1.9084 -3.1831 -2.2409 15 6 3.5203 -4.8479 -2.7158 16 6 3.5684 -5.4628 -1.3159 17 7 4.3658 -4.5835 -0.4360 18 6 5.7005 -4.7259 -0.3153 19 8 6.3255 -3.9875 0.4161 20 6 6.4164 -5.8027 -1.0894 21 6 7.8902 -5.7485 -0.7798 22 6 8.5111 -6.4144 0.2103 23 6 9.8813 -6.0737 0.1370 24 6 10.0157 -5.2194 -0.8933 25 8 8.8066 -5.0266 -1.4453 26 6 3.6262 -3.5444 0.3099 27 6 4.2926 -2.1874 0.0483 28 1 -0.4851 0.8399 -0.0004 29 1 4.8005 -0.2662 -1.5810 30 1 3.2347 0.5837 -1.5292 31 1 3.7147 -0.4652 -3.7684 32 1 2.2308 -1.0926 -3.0068 33 1 4.7906 -2.5833 -3.2465 34 1 4.5185 -4.8628 -3.1534 35 1 2.8405 -5.4249 -3.3427 36 1 4.0324 -6.4479 -1.3654 37 1 2.5569 -5.5551 -0.9204 38 1 6.2638 -5.6451 -2.1571 39 1 6.0208 -6.7780 -0.8059 40 1 8.0509 -7.0809 0.9249 41 1 10.6689 -6.4308 0.7839 42 1 10.9393 -4.7658 -1.2213 43 1 2.5926 -3.5132 -0.0348 44 1 3.6513 -3.7721 1.3755 45 1 5.1046 -2.3100 -0.6685 46 1 4.6874 -1.7888 0.9829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071010741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:11 Heat of formation + Delta-G solvation = 5.240034 kcal Electronic energy + Delta-G solvation = -31277.221905 eV Core-core repulsion = 27170.995396 eV Total energy + Delta-G solvation = -4106.226509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63553 -40.09355 -38.73002 -36.07659 -35.64758 -33.65513 -33.23017 -32.32654 -31.63169 -30.59964 -29.67281 -27.59634 -26.30356 -24.54193 -23.88587 -22.35966 -21.84113 -20.72202 -20.37518 -19.78714 -18.93381 -17.50035 -17.36235 -16.71170 -16.44349 -16.06427 -15.64874 -15.50634 -15.31072 -14.71243 -14.58222 -14.09697 -14.05506 -13.73511 -13.47415 -13.10401 -12.99932 -12.90874 -12.80693 -12.70189 -12.43839 -12.36205 -12.00764 -11.98291 -11.84914 -11.47814 -11.20389 -10.90723 -10.61048 -10.47499 -10.29168 -9.98158 -9.84185 -9.63950 -9.39602 -9.03536 -8.72910 -8.53667 -8.37741 -8.18216 -6.70152 -5.81767 -3.13678 1.62183 2.51572 2.70375 2.83654 3.16964 3.33748 3.37679 3.55555 3.61643 3.82707 4.41898 4.53431 4.65846 4.79020 4.82238 4.91995 4.98680 5.05566 5.11155 5.15130 5.22386 5.45152 5.51751 5.63310 5.69775 5.74381 5.81809 5.84161 5.96338 6.00624 6.02226 6.13808 6.21608 6.37681 6.39466 6.41319 6.49900 6.80840 6.90501 6.97944 7.04584 7.10963 7.61297 8.06155 8.15664 8.29829 8.49900 8.95175 9.06084 9.85963 10.29476 11.34518 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.003961 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.963358 B = 7066.786772 C = 7590.003862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 0.871 3.129 4 H -0.290 1.290 5 H -0.306 1.306 6 H -0.275 1.275 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.598 5.598 10 C 0.116 3.884 11 C 0.093 3.907 12 N -0.730 5.730 13 C 0.510 3.490 14 O -0.490 6.490 15 C -0.162 4.162 16 C 0.116 3.884 17 N -0.611 5.611 18 C 0.514 3.486 19 O -0.523 6.523 20 C -0.062 4.062 21 C 0.010 3.990 22 C -0.199 4.199 23 C -0.214 4.214 24 C -0.040 4.040 25 O -0.172 6.172 26 C 0.095 3.905 27 C 0.147 3.853 28 H 0.259 0.741 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.391 0.609 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.201 0.799 43 H 0.119 0.881 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.790 -15.367 -7.323 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.703 3.297 4 H -0.219 1.219 5 H -0.234 1.234 6 H -0.200 1.200 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.323 5.323 10 C -0.010 4.010 11 C -0.033 4.033 12 N -0.384 5.384 13 C 0.294 3.706 14 O -0.362 6.362 15 C -0.204 4.204 16 C -0.007 4.007 17 N -0.346 5.346 18 C 0.300 3.700 19 O -0.399 6.399 20 C -0.102 4.102 21 C -0.040 4.040 22 C -0.218 4.218 23 C -0.233 4.233 24 C -0.108 4.108 25 O -0.068 6.068 26 C -0.027 4.027 27 C 0.021 3.979 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.224 0.776 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.137 0.863 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 15.060 -14.520 -6.838 22.008 hybrid contribution 1.128 0.869 0.010 1.424 sum 16.188 -13.650 -6.828 22.248 Atomic orbital electron populations 1.69920 1.05754 1.26084 1.52394 1.25241 0.94947 0.97091 0.99652 0.87041 0.80567 0.85636 0.76457 1.21854 1.23420 1.20014 1.18512 0.87022 0.94214 1.36149 0.90078 1.44657 1.09673 1.43646 1.34309 1.21832 0.96576 0.94501 0.88126 1.22247 1.01628 0.81785 0.97654 1.46346 1.14064 1.07408 1.70547 1.20436 0.86117 0.86361 0.77697 1.90878 1.18973 1.84092 1.42287 1.22230 1.02836 0.96183 0.99122 1.21777 0.97901 0.92498 0.88572 1.48882 1.06014 1.34613 1.45078 1.20137 0.81836 0.85198 0.82795 1.90763 1.65452 1.44985 1.38675 1.20191 0.86661 1.00654 1.02680 1.21520 0.90562 0.96249 0.95683 1.21498 0.94100 1.05453 1.00742 1.21782 0.97250 1.02979 1.01275 1.23960 0.87208 1.02335 0.97309 1.83984 1.16485 1.55872 1.50445 1.22830 0.98091 0.86867 0.94873 1.21407 0.90687 0.88802 0.96971 0.93150 0.94041 0.92869 0.92861 0.88674 0.77604 0.90806 0.87901 0.89962 0.88669 0.87424 0.86169 0.83709 0.83608 0.78263 0.86316 0.92589 0.92903 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.97 55.49 0.78 -27.13 16 2 C 0.03 0.86 5.34 -17.43 -0.09 0.77 16 3 Si 0.87 22.72 25.02 -169.99 -4.25 18.46 16 4 H -0.29 -7.27 6.65 56.52 0.38 -6.90 16 5 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 6 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.38 8.26 -15.06 -0.12 -6.50 16 8 H 0.08 2.44 6.49 -52.49 -0.34 2.10 16 9 N -0.60 -14.09 1.50 -170.96 -0.26 -14.35 16 10 C 0.12 2.49 5.15 -3.37 -0.02 2.48 16 11 C 0.09 1.72 6.56 -3.42 -0.02 1.70 16 12 N -0.73 -11.27 4.58 -59.16 -0.27 -11.54 16 13 C 0.51 8.31 4.52 -10.37 -0.05 8.26 16 14 O -0.49 -10.69 13.59 5.56 0.08 -10.61 16 15 C -0.16 -1.71 6.20 -27.89 -0.17 -1.89 16 16 C 0.12 1.22 5.54 -3.36 -0.02 1.20 16 17 N -0.61 -8.57 2.39 -171.41 -0.41 -8.98 16 18 C 0.51 7.26 7.05 -10.98 -0.08 7.18 16 19 O -0.52 -9.77 14.60 5.56 0.08 -9.69 16 20 C -0.06 -0.60 4.89 -29.03 -0.14 -0.74 16 21 C 0.01 0.13 5.81 -35.63 -0.21 -0.08 16 22 C -0.20 -2.28 10.81 -39.70 -0.43 -2.71 16 23 C -0.21 -2.24 10.91 -39.70 -0.43 -2.67 16 24 C -0.04 -0.41 12.09 29.42 0.36 -0.06 16 25 O -0.17 -2.17 10.65 5.71 0.06 -2.11 16 26 C 0.09 1.78 4.87 -3.13 -0.02 1.76 16 27 C 0.15 3.11 4.46 -3.13 -0.01 3.09 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.04 0.81 7.83 -51.93 -0.41 0.41 16 30 H 0.05 1.26 2.79 -51.92 -0.14 1.12 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 2.14 7.03 -51.93 -0.37 1.77 16 33 H 0.39 4.87 8.73 -40.82 -0.36 4.51 16 34 H 0.07 0.60 7.02 -51.93 -0.36 0.23 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.53 6.71 -51.93 -0.35 0.18 16 37 H 0.09 1.11 7.81 -51.93 -0.41 0.71 16 38 H 0.11 0.81 7.22 -51.93 -0.38 0.43 16 39 H 0.12 0.79 7.52 -51.93 -0.39 0.40 16 40 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 2.53 3.87 -51.93 -0.20 2.33 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.06 5.91 -51.93 -0.31 0.76 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -37.24 353.62 -6.45 -43.69 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.13 Total: 5.13 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -1.46 Total: 11.79 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.16 Total: -61.99 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.22 Total: -22.41 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.25 Total: 18.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.24 -6.45 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.931 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds