Wall clock time and date at job start Tue Mar 31 2020 18:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47384 * 275.24108 * 3 2 1 5 5 H 1.48506 * 109.47371 * 35.24068 * 3 2 1 6 6 H 1.48500 * 109.47381 * 155.24078 * 3 2 1 7 7 C 1.38817 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 335.08722 * 7 2 1 9 9 N 1.36931 * 119.99864 * 155.09244 * 7 2 1 10 10 C 1.47743 * 121.65865 * 327.79606 * 9 7 2 11 11 C 1.52974 * 108.82545 * 275.73086 * 10 9 7 12 12 N 1.47656 * 108.91648 * 305.17797 * 11 10 9 13 13 C 1.36133 * 116.58056 * 97.49459 * 12 11 10 14 14 O 1.21282 * 120.46350 * 356.91346 * 13 12 11 15 15 C 1.50701 * 119.07369 * 176.88373 * 13 12 11 16 16 C 1.52976 * 109.53182 * 115.52707 * 15 13 12 17 17 N 1.47757 * 108.82597 * 306.58093 * 16 15 13 18 18 C 1.34776 * 121.66288 * 270.98707 * 17 16 15 19 19 O 1.21280 * 120.00375 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99495 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.46798 * 179.97438 * 20 18 17 22 22 C 1.34508 * 125.79218 * 89.99937 * 21 20 18 23 23 C 1.41384 * 106.84557 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83598 * 0.02562 * 23 22 21 25 25 O 1.34303 * 125.78839 * 270.02324 * 21 20 18 26 26 C 1.47752 * 116.68135 * 91.26283 * 17 16 15 27 27 C 1.47760 * 121.65997 * 147.82618 * 9 7 2 28 28 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58176 * 155.92543 * 10 9 7 30 30 H 1.09007 * 109.57675 * 35.52995 * 10 9 7 31 31 H 1.09005 * 109.56994 * 185.34700 * 11 10 9 32 32 H 1.09000 * 109.56608 * 65.00104 * 11 10 9 33 33 H 0.97006 * 121.70477 * 277.47642 * 12 11 10 34 34 H 1.08998 * 109.46008 * 355.51360 * 15 13 12 35 35 H 1.08998 * 109.46607 * 235.54734 * 15 13 12 36 36 H 1.09003 * 109.57618 * 186.77761 * 16 15 13 37 37 H 1.08996 * 109.68622 * 66.45128 * 16 15 13 38 38 H 1.08995 * 109.47322 * 60.00014 * 20 18 17 39 39 H 1.09000 * 109.46990 * 299.99766 * 20 18 17 40 40 H 1.08008 * 126.57550 * 359.97438 * 22 21 20 41 41 H 1.07999 * 126.58190 * 180.02562 * 23 22 21 42 42 H 1.07997 * 125.78569 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.58066 * 351.92302 * 26 17 16 44 44 H 1.08999 * 109.57796 * 112.32771 * 26 17 16 45 45 H 1.09002 * 109.58774 * 161.69792 * 27 9 7 46 46 H 1.09005 * 109.58236 * 281.97356 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 2.3869 2.1103 -1.3942 5 1 1.5074 2.6182 0.8079 6 1 3.5987 1.4107 0.5863 7 6 2.0102 -1.2022 -0.0005 8 1 1.5456 -2.0941 0.3930 9 7 3.2840 -1.2571 -0.5000 10 6 3.7180 -0.3896 -1.6144 11 6 3.3175 -1.0468 -2.9364 12 7 3.8736 -2.4140 -2.9791 13 6 3.0334 -3.4247 -2.6245 14 8 1.9084 -3.1831 -2.2409 15 6 3.5203 -4.8479 -2.7158 16 6 3.5684 -5.4628 -1.3159 17 7 4.3658 -4.5835 -0.4360 18 6 5.7005 -4.7259 -0.3153 19 8 6.3255 -3.9875 0.4161 20 6 6.4164 -5.8027 -1.0894 21 6 7.8902 -5.7485 -0.7798 22 6 8.5111 -6.4144 0.2103 23 6 9.8813 -6.0737 0.1370 24 6 10.0157 -5.2194 -0.8933 25 8 8.8066 -5.0266 -1.4453 26 6 3.6262 -3.5444 0.3099 27 6 4.2926 -2.1874 0.0483 28 1 -0.4851 0.8399 -0.0004 29 1 4.8005 -0.2662 -1.5810 30 1 3.2347 0.5837 -1.5292 31 1 3.7147 -0.4652 -3.7684 32 1 2.2308 -1.0926 -3.0068 33 1 4.7906 -2.5833 -3.2465 34 1 4.5185 -4.8628 -3.1534 35 1 2.8405 -5.4249 -3.3427 36 1 4.0324 -6.4479 -1.3654 37 1 2.5569 -5.5551 -0.9204 38 1 6.2638 -5.6451 -2.1571 39 1 6.0208 -6.7780 -0.8059 40 1 8.0509 -7.0809 0.9249 41 1 10.6689 -6.4308 0.7839 42 1 10.9393 -4.7658 -1.2213 43 1 2.5926 -3.5132 -0.0348 44 1 3.6513 -3.7721 1.3755 45 1 5.1046 -2.3100 -0.6685 46 1 4.6874 -1.7888 0.9829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071010741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:10 Heat of formation + Delta-G solvation = -23.273231 kcal Electronic energy + Delta-G solvation = -31278.458333 eV Core-core repulsion = 27170.995396 eV Total energy + Delta-G solvation = -4107.462937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41243 -41.31149 -40.02401 -37.84257 -36.84080 -35.13402 -34.13982 -33.75551 -32.99718 -31.89639 -31.11948 -28.80334 -27.76748 -26.03704 -25.19921 -23.76448 -22.61961 -22.28290 -21.54705 -21.12660 -19.99979 -18.69049 -18.46235 -18.20605 -17.63043 -17.47974 -17.05368 -16.71349 -16.53477 -16.14775 -15.89776 -15.61605 -15.16144 -14.97969 -14.72631 -14.46297 -14.43089 -14.25459 -14.14482 -13.73632 -13.67561 -13.50820 -13.49665 -13.31203 -12.86594 -12.75294 -12.67019 -12.45830 -12.25254 -12.15750 -12.06194 -11.72806 -11.48314 -10.88562 -10.75111 -10.58314 -10.41409 -9.87901 -9.68600 -9.31696 -8.67426 -8.07136 -5.34881 0.82070 1.26380 1.40244 1.49923 1.65967 1.70344 1.96453 2.08757 2.27066 2.47341 2.61485 3.07540 3.40452 3.58385 3.78430 3.92756 4.10250 4.19717 4.21158 4.25531 4.31175 4.33800 4.37776 4.43466 4.49900 4.55610 4.59706 4.65479 4.71838 4.74855 4.81757 4.94812 4.99081 5.02684 5.07686 5.15580 5.25685 5.29740 5.49001 5.67534 5.72667 5.97891 6.25357 6.27003 6.51973 6.92138 6.98797 7.21201 7.68572 7.74389 8.16567 9.13842 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.003961 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.963358 B = 7066.786772 C = 7590.003862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.031 4.031 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.316 1.316 6 H -0.275 1.275 7 C -0.201 4.201 8 H 0.045 0.955 9 N -0.606 5.606 10 C 0.108 3.892 11 C 0.103 3.897 12 N -0.719 5.719 13 C 0.500 3.500 14 O -0.555 6.555 15 C -0.151 4.151 16 C 0.112 3.888 17 N -0.607 5.607 18 C 0.513 3.487 19 O -0.576 6.576 20 C -0.051 4.051 21 C -0.011 4.011 22 C -0.214 4.214 23 C -0.231 4.231 24 C -0.045 4.045 25 O -0.190 6.190 26 C 0.109 3.891 27 C 0.157 3.843 28 H 0.256 0.744 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.411 0.589 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.232 0.768 43 H 0.092 0.908 44 H 0.041 0.959 45 H 0.068 0.932 46 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.069 -17.524 -9.630 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.225 4.225 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.246 1.246 6 H -0.201 1.201 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.024 4.024 12 N -0.374 5.374 13 C 0.287 3.713 14 O -0.431 6.431 15 C -0.192 4.192 16 C -0.010 4.010 17 N -0.341 5.341 18 C 0.303 3.697 19 O -0.455 6.455 20 C -0.089 4.089 21 C -0.061 4.061 22 C -0.233 4.233 23 C -0.250 4.250 24 C -0.112 4.112 25 O -0.087 6.087 26 C -0.015 4.015 27 C 0.031 3.969 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.248 0.752 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.181 0.819 42 H 0.248 0.752 43 H 0.110 0.890 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 18.421 -16.725 -9.205 26.528 hybrid contribution 0.209 1.428 0.754 1.629 sum 18.629 -15.296 -8.450 25.543 Atomic orbital electron populations 1.70046 1.07337 1.26463 1.55877 1.25761 0.95490 1.00166 1.01091 0.85975 0.78646 0.81625 0.76998 1.20021 1.24569 1.20059 1.18319 0.88193 0.92689 1.33866 0.93733 1.44710 1.08674 1.44341 1.35332 1.21976 0.97684 0.93291 0.88784 1.21892 0.99318 0.83886 0.97281 1.46272 1.15044 1.06089 1.70004 1.21555 0.85214 0.88742 0.75791 1.90872 1.21881 1.85385 1.44963 1.22270 1.05403 0.91717 0.99781 1.22101 0.97269 0.94205 0.87385 1.48831 1.06397 1.33809 1.45040 1.20992 0.81205 0.85405 0.82125 1.90751 1.66462 1.47244 1.41015 1.20309 0.84723 1.00260 1.03634 1.21939 0.91534 0.96517 0.96132 1.21853 0.94830 1.05751 1.00878 1.22149 0.97600 1.03355 1.01911 1.24680 0.87623 1.01929 0.96970 1.83971 1.17310 1.56309 1.51104 1.22251 0.96979 0.87475 0.94758 1.21375 0.90426 0.89246 0.95813 0.93528 0.91553 0.95029 0.88807 0.93132 0.75244 0.86839 0.85357 0.84070 0.90510 0.84082 0.82262 0.82712 0.81867 0.75170 0.89027 0.94019 0.91374 0.98513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.11 13.97 21.65 0.30 -61.81 16 2 C -0.03 -1.86 5.34 84.86 0.45 -1.41 16 3 Si 0.94 48.75 25.02 68.60 1.72 50.46 16 4 H -0.27 -13.27 6.65 99.48 0.66 -12.61 16 5 H -0.32 -16.87 7.11 99.48 0.71 -16.16 16 6 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.20 -11.63 8.26 84.04 0.69 -10.94 16 8 H 0.05 2.89 6.49 -2.91 -0.02 2.87 16 9 N -0.61 -29.05 1.50 -694.80 -1.04 -30.09 16 10 C 0.11 4.56 5.15 86.13 0.44 5.00 16 11 C 0.10 3.70 6.56 86.15 0.57 4.27 16 12 N -0.72 -20.42 4.58 -458.68 -2.10 -22.52 16 13 C 0.50 15.48 4.52 87.44 0.40 15.87 16 14 O -0.55 -24.74 13.59 -3.04 -0.04 -24.78 16 15 C -0.15 -2.51 6.20 29.84 0.18 -2.33 16 16 C 0.11 1.92 5.54 86.13 0.48 2.40 16 17 N -0.61 -15.67 2.39 -814.60 -1.95 -17.61 16 18 C 0.51 12.96 7.05 87.66 0.62 13.58 16 19 O -0.58 -20.78 14.60 -3.03 -0.04 -20.82 16 20 C -0.05 -0.72 4.89 29.10 0.14 -0.58 16 21 C -0.01 -0.23 5.81 24.83 0.14 -0.08 16 22 C -0.21 -4.36 10.81 22.19 0.24 -4.12 16 23 C -0.23 -4.30 10.91 22.19 0.24 -4.06 16 24 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 25 O -0.19 -4.23 10.65 -2.50 -0.03 -4.26 16 26 C 0.11 4.17 4.87 86.28 0.42 4.59 16 27 C 0.16 6.68 4.46 86.28 0.38 7.07 16 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 30 H 0.03 1.49 2.79 -2.38 -0.01 1.48 16 31 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.05 2.31 7.03 -2.39 -0.02 2.29 16 33 H 0.41 8.48 8.73 -92.70 -0.81 7.67 16 34 H 0.11 1.04 7.02 -2.39 -0.02 1.02 16 35 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.14 0.85 6.71 -2.39 -0.02 0.83 16 37 H 0.08 1.66 7.81 -2.39 -0.02 1.64 16 38 H 0.14 1.11 7.22 -2.39 -0.02 1.09 16 39 H 0.16 1.03 7.52 -2.39 -0.02 1.01 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.09 4.11 3.87 -2.39 -0.01 4.10 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.66 5.91 -2.39 -0.01 2.65 16 46 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: -1.00 -90.58 353.62 3.21 -87.37 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.18 Total: 14.80 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 6.21 Total: 29.26 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -4.79 Total: -132.03 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.11 Total: -49.86 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.72 Total: 50.46 kcal Total: -90.58 3.21 -87.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.099 kcal (2) G-P(sol) polarization free energy of solvation -90.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds