Wall clock time and date at job start Tue Mar 31 2020 18:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99507 * 2 1 4 4 H 1.48497 * 109.47185 * 239.99907 * 3 2 1 5 5 H 1.48495 * 109.47710 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46635 * 120.00356 * 3 2 1 7 7 C 1.38807 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00106 * 160.69176 * 7 2 1 9 9 N 1.36938 * 120.00176 * 340.69084 * 7 2 1 10 10 C 1.43420 * 120.63772 * 155.67857 * 9 7 2 11 11 C 1.55323 * 116.23922 * 269.37761 * 10 9 7 12 12 C 1.55195 * 108.87173 * 319.46511 * 11 10 9 13 13 O 1.39636 * 110.56929 * 322.14215 * 12 11 10 14 14 C 1.42375 * 108.63957 * 101.17087 * 13 12 11 15 15 H 1.09003 * 108.61703 * 28.43139 * 14 13 12 16 16 C 1.53001 * 108.62381 * 146.33741 * 14 13 12 17 17 N 1.46496 * 109.47451 * 300.00874 * 16 14 13 18 18 C 1.34771 * 120.00177 * 180.02562 * 17 16 14 19 19 O 1.21609 * 119.99972 * 359.71098 * 18 17 16 20 20 C 1.47394 * 120.00091 * 179.72440 * 18 17 16 21 21 C 1.37359 * 128.56852 * 0.02562 * 20 18 17 22 22 O 1.33486 * 106.34534 * 179.97438 * 21 20 18 23 23 N 1.20661 * 113.15988 * 359.97438 * 22 21 20 24 24 C 1.30023 * 112.29626 * 359.73577 * 23 22 21 25 25 C 1.50698 * 127.33169 * 180.27213 * 24 23 22 26 26 C 1.52998 * 117.50076 * 8.77164 * 25 24 23 27 27 C 1.52994 * 117.50222 * 300.14443 * 25 24 23 28 28 C 1.46922 * 113.79335 * 267.46102 * 14 13 12 29 29 H 0.96995 * 119.99943 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.12452 * 147.61797 * 10 9 7 31 31 H 1.08999 * 107.96349 * 31.00761 * 10 9 7 32 32 H 1.09000 * 109.57136 * 199.65263 * 11 10 9 33 33 H 1.08995 * 109.57201 * 79.27823 * 11 10 9 34 34 H 1.09006 * 109.25397 * 201.86153 * 12 11 10 35 35 H 1.08995 * 109.25971 * 82.42389 * 12 11 10 36 36 H 1.08997 * 109.46954 * 179.97438 * 16 14 13 37 37 H 1.09001 * 109.46548 * 60.00440 * 16 14 13 38 38 H 0.97006 * 119.99507 * 359.71729 * 17 16 14 39 39 H 1.08002 * 126.82498 * 359.97010 * 21 20 18 40 40 H 1.09001 * 115.54555 * 154.47924 * 25 24 23 41 41 H 1.08996 * 117.50224 * 359.97438 * 26 25 24 42 42 H 1.08998 * 117.49904 * 145.01996 * 26 25 24 43 43 H 1.08996 * 117.50339 * 214.98124 * 27 25 24 44 44 H 1.09002 * 117.49792 * 0.02562 * 27 25 24 45 45 H 1.08995 * 109.98994 * 176.12133 * 28 14 13 46 46 H 1.09000 * 109.98195 * 297.48463 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0447 -1.2283 -0.3098 9 7 1.3834 -2.3549 0.3911 10 6 1.8497 -3.6319 -0.0658 11 6 1.2156 -4.1646 -1.3798 12 6 -0.3038 -3.8486 -1.3680 13 8 -0.8281 -4.0076 -0.0836 14 6 -0.9694 -2.7224 0.5125 15 1 -1.1301 -1.9883 -0.2771 16 6 -2.2003 -2.7379 1.4211 17 7 -3.3901 -3.0524 0.6264 18 6 -4.5982 -3.1205 1.2197 19 8 -4.7000 -2.9261 2.4158 20 6 -5.7961 -3.4310 0.4190 21 6 -5.8843 -3.6799 -0.9290 22 8 -7.1742 -3.9086 -1.1852 23 7 -7.8729 -3.8367 -0.2041 24 6 -7.1914 -3.5579 0.8675 25 6 -7.7190 -3.3956 2.2698 26 6 -9.1799 -3.7733 2.5229 27 6 -8.7612 -2.3017 2.5103 28 6 0.1946 -2.3060 1.3065 29 1 -0.4850 0.8400 0.0004 30 1 1.6631 -4.3625 0.7214 31 1 2.9275 -3.5632 -0.2129 32 1 1.3637 -5.2425 -1.4459 33 1 1.6833 -3.6768 -2.2349 34 1 -0.8169 -4.5247 -2.0520 35 1 -0.4598 -2.8207 -1.6952 36 1 -2.3213 -1.7593 1.8856 37 1 -2.0706 -3.4937 2.1957 38 1 -3.3089 -3.2073 -0.3278 39 1 -5.0715 -3.6886 -1.6402 40 1 -7.0025 -3.5922 3.0673 41 1 -9.7595 -4.1386 1.6753 42 1 -9.4248 -4.2185 3.4872 43 1 -8.7307 -1.7789 3.4662 44 1 -9.0656 -1.6995 1.6542 45 1 0.0499 -1.2908 1.6757 46 1 0.3395 -2.9905 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073759659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:55 Heat of formation + Delta-G solvation = 40.249138 kcal Electronic energy + Delta-G solvation = -29547.264669 eV Core-core repulsion = 25442.556269 eV Total energy + Delta-G solvation = -4104.708400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.04831 -39.63974 -38.73559 -37.60174 -35.08506 -34.62280 -33.39382 -32.39868 -31.88352 -31.09842 -28.71559 -26.17396 -25.38884 -24.60425 -24.12212 -22.62882 -22.45400 -20.98729 -20.57306 -20.12382 -19.65128 -18.36200 -17.81516 -17.14067 -16.73656 -16.13316 -15.71960 -15.61815 -14.99645 -14.92461 -14.79601 -14.39788 -14.22127 -13.97518 -13.63362 -13.17363 -13.06120 -12.64314 -12.35343 -12.28226 -12.01422 -11.83577 -11.79896 -11.48993 -11.44537 -11.28787 -10.89128 -10.80027 -10.63898 -10.54405 -10.24208 -10.05203 -9.93889 -9.87975 -9.72796 -9.68543 -9.57370 -8.88333 -8.79916 -8.56029 -6.87856 -5.97661 -3.36087 0.96262 1.58913 2.79861 3.26911 3.30612 3.31131 3.37519 3.39638 3.65059 3.83897 4.07801 4.39285 4.61034 4.69420 4.71985 4.81638 4.86467 5.00211 5.17195 5.23059 5.34675 5.42124 5.55863 5.64857 5.74376 5.75451 5.85622 5.89642 5.92404 6.00263 6.07161 6.25386 6.33190 6.39009 6.46159 6.60629 6.63306 6.75252 6.82865 6.90250 7.04863 7.26348 7.63723 7.67051 8.04123 8.05469 8.26851 8.30826 9.01895 9.69983 10.24003 11.11545 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002869 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.976872 B = 9755.818827 C =10500.160915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.370 6.370 14 C 0.060 3.940 15 H 0.108 0.892 16 C 0.122 3.878 17 N -0.705 5.705 18 C 0.589 3.411 19 O -0.534 6.534 20 C -0.240 4.240 21 C -0.008 4.008 22 O 0.096 5.904 23 N -0.361 5.361 24 C 0.100 3.900 25 C -0.084 4.084 26 C -0.167 4.167 27 C -0.158 4.158 28 C 0.143 3.857 29 H 0.256 0.744 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.227 0.773 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -7.286 -1.158 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.288 6.288 14 C 0.001 3.999 15 H 0.126 0.874 16 C -0.001 4.001 17 N -0.355 5.355 18 C 0.375 3.625 19 O -0.412 6.412 20 C -0.247 4.247 21 C -0.090 4.090 22 O 0.037 5.963 23 N -0.067 5.067 24 C -0.062 4.062 25 C -0.103 4.103 26 C -0.204 4.204 27 C -0.196 4.196 28 C 0.018 3.982 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.243 0.757 40 H 0.158 0.842 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.882 -7.388 -0.465 15.732 hybrid contribution 1.484 1.155 -0.595 1.973 sum -12.398 -6.233 -1.060 13.917 Atomic orbital electron populations 1.69841 1.05207 1.25858 1.54490 1.24888 0.95312 0.98341 1.00950 0.86329 0.78956 0.83132 0.78125 1.21033 1.21620 1.21064 1.19225 0.93699 0.85173 1.39769 0.91321 1.44105 1.34137 1.01490 1.51045 1.20381 0.95949 0.87776 0.92759 1.23578 0.96929 0.99109 1.01719 1.22354 0.93498 1.00712 0.84558 1.87519 1.83276 1.29053 1.28988 1.22221 0.93841 0.84925 0.98888 0.87446 1.21770 0.82773 1.01320 0.94285 1.45755 1.06577 1.70692 1.12432 1.16810 0.81613 0.77506 0.86595 1.90772 1.85891 1.50228 1.14338 1.22389 0.95385 1.13108 0.93864 1.26448 0.88209 0.97565 0.96795 1.84564 1.15647 1.65613 1.30482 1.73598 1.18422 1.20274 0.94451 1.23836 0.88549 0.98790 0.95054 1.20366 0.92995 1.06281 0.90647 1.23045 0.95549 0.98180 1.03663 1.23013 1.01140 0.91728 1.03715 1.20742 0.85404 1.01426 0.90626 0.93392 0.94980 0.94860 0.93152 0.92466 0.93076 0.91879 0.90037 0.91623 0.76776 0.75663 0.84249 0.88170 0.87886 0.87651 0.88680 0.87758 0.96195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.89 9.56 55.49 0.53 -22.36 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.41 29.60 -169.99 -5.03 15.38 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.30 9.61 -15.06 -0.14 -6.45 16 8 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 9 N -0.59 -13.58 2.61 -174.51 -0.46 -14.03 16 10 C 0.16 3.26 5.33 -4.44 -0.02 3.23 16 11 C -0.17 -3.05 6.75 -24.34 -0.16 -3.22 16 12 C 0.07 1.16 6.38 38.32 0.24 1.40 16 13 O -0.37 -6.74 9.54 -31.92 -0.30 -7.05 16 14 C 0.06 1.14 1.95 -29.64 -0.06 1.08 16 15 H 0.11 2.30 5.23 -51.93 -0.27 2.03 16 16 C 0.12 2.11 5.24 -4.04 -0.02 2.09 16 17 N -0.70 -10.45 5.43 -61.40 -0.33 -10.79 16 18 C 0.59 9.20 7.81 -12.54 -0.10 9.10 16 19 O -0.53 -9.93 15.81 5.27 0.08 -9.85 16 20 C -0.24 -3.16 6.47 -102.89 -0.67 -3.83 16 21 C -0.01 -0.08 11.85 30.41 0.36 0.28 16 22 O 0.10 1.08 11.06 18.67 0.21 1.29 16 23 N -0.36 -4.67 11.71 34.78 0.41 -4.26 16 24 C 0.10 1.34 7.07 -79.76 -0.56 0.77 16 25 C -0.08 -1.02 5.90 -91.78 -0.54 -1.57 16 26 C -0.17 -1.63 10.16 -26.73 -0.27 -1.90 16 27 C -0.16 -1.61 10.23 -26.73 -0.27 -1.89 16 28 C 0.14 3.10 4.71 -4.93 -0.02 3.07 16 29 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.03 0.64 7.99 -51.93 -0.41 0.22 16 31 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.23 6.66 -51.93 -0.35 0.89 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.40 5.02 7.51 -40.82 -0.31 4.71 16 39 H 0.23 1.24 7.68 -52.49 -0.40 0.84 16 40 H 0.14 1.83 7.30 -51.93 -0.38 1.45 16 41 H 0.10 1.01 7.97 -51.93 -0.41 0.59 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 2.49 6.02 -51.93 -0.31 2.18 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -28.86 374.80 -8.19 -37.05 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.61 Total: 6.80 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.33 Total: 2.18 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.15 Total: -51.45 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.01 Total: -15.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.86 -8.19 -37.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073759659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.297 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds