Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99507 * 2 1 4 4 H 1.48497 * 109.47185 * 239.99907 * 3 2 1 5 5 H 1.48495 * 109.47710 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46635 * 120.00356 * 3 2 1 7 7 C 1.38807 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00106 * 160.69176 * 7 2 1 9 9 N 1.36938 * 120.00176 * 340.69084 * 7 2 1 10 10 C 1.43420 * 120.63772 * 155.67857 * 9 7 2 11 11 C 1.55323 * 116.23922 * 269.37761 * 10 9 7 12 12 C 1.55195 * 108.87173 * 319.46511 * 11 10 9 13 13 O 1.39636 * 110.56929 * 322.14215 * 12 11 10 14 14 C 1.42375 * 108.63957 * 101.17087 * 13 12 11 15 15 H 1.09003 * 108.61703 * 28.43139 * 14 13 12 16 16 C 1.53001 * 108.62381 * 146.33741 * 14 13 12 17 17 N 1.46496 * 109.47451 * 300.00874 * 16 14 13 18 18 C 1.34771 * 120.00177 * 180.02562 * 17 16 14 19 19 O 1.21609 * 119.99972 * 359.71098 * 18 17 16 20 20 C 1.47394 * 120.00091 * 179.72440 * 18 17 16 21 21 C 1.37359 * 128.56852 * 0.02562 * 20 18 17 22 22 O 1.33486 * 106.34534 * 179.97438 * 21 20 18 23 23 N 1.20661 * 113.15988 * 359.97438 * 22 21 20 24 24 C 1.30023 * 112.29626 * 359.73577 * 23 22 21 25 25 C 1.50698 * 127.33169 * 180.27213 * 24 23 22 26 26 C 1.52998 * 117.50076 * 8.77164 * 25 24 23 27 27 C 1.52994 * 117.50222 * 300.14443 * 25 24 23 28 28 C 1.46922 * 113.79335 * 267.46102 * 14 13 12 29 29 H 0.96995 * 119.99943 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.12452 * 147.61797 * 10 9 7 31 31 H 1.08999 * 107.96349 * 31.00761 * 10 9 7 32 32 H 1.09000 * 109.57136 * 199.65263 * 11 10 9 33 33 H 1.08995 * 109.57201 * 79.27823 * 11 10 9 34 34 H 1.09006 * 109.25397 * 201.86153 * 12 11 10 35 35 H 1.08995 * 109.25971 * 82.42389 * 12 11 10 36 36 H 1.08997 * 109.46954 * 179.97438 * 16 14 13 37 37 H 1.09001 * 109.46548 * 60.00440 * 16 14 13 38 38 H 0.97006 * 119.99507 * 359.71729 * 17 16 14 39 39 H 1.08002 * 126.82498 * 359.97010 * 21 20 18 40 40 H 1.09001 * 115.54555 * 154.47924 * 25 24 23 41 41 H 1.08996 * 117.50224 * 359.97438 * 26 25 24 42 42 H 1.08998 * 117.49904 * 145.01996 * 26 25 24 43 43 H 1.08996 * 117.50339 * 214.98124 * 27 25 24 44 44 H 1.09002 * 117.49792 * 0.02562 * 27 25 24 45 45 H 1.08995 * 109.98994 * 176.12133 * 28 14 13 46 46 H 1.09000 * 109.98195 * 297.48463 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0447 -1.2283 -0.3098 9 7 1.3834 -2.3549 0.3911 10 6 1.8497 -3.6319 -0.0658 11 6 1.2156 -4.1646 -1.3798 12 6 -0.3038 -3.8486 -1.3680 13 8 -0.8281 -4.0076 -0.0836 14 6 -0.9694 -2.7224 0.5125 15 1 -1.1301 -1.9883 -0.2771 16 6 -2.2003 -2.7379 1.4211 17 7 -3.3901 -3.0524 0.6264 18 6 -4.5982 -3.1205 1.2197 19 8 -4.7000 -2.9261 2.4158 20 6 -5.7961 -3.4310 0.4190 21 6 -5.8843 -3.6799 -0.9290 22 8 -7.1742 -3.9086 -1.1852 23 7 -7.8729 -3.8367 -0.2041 24 6 -7.1914 -3.5579 0.8675 25 6 -7.7190 -3.3956 2.2698 26 6 -9.1799 -3.7733 2.5229 27 6 -8.7612 -2.3017 2.5103 28 6 0.1946 -2.3060 1.3065 29 1 -0.4850 0.8400 0.0004 30 1 1.6631 -4.3625 0.7214 31 1 2.9275 -3.5632 -0.2129 32 1 1.3637 -5.2425 -1.4459 33 1 1.6833 -3.6768 -2.2349 34 1 -0.8169 -4.5247 -2.0520 35 1 -0.4598 -2.8207 -1.6952 36 1 -2.3213 -1.7593 1.8856 37 1 -2.0706 -3.4937 2.1957 38 1 -3.3089 -3.2073 -0.3278 39 1 -5.0715 -3.6886 -1.6402 40 1 -7.0025 -3.5922 3.0673 41 1 -9.7595 -4.1386 1.6753 42 1 -9.4248 -4.2185 3.4872 43 1 -8.7307 -1.7789 3.4662 44 1 -9.0656 -1.6995 1.6542 45 1 0.0499 -1.2908 1.6757 46 1 0.3395 -2.9905 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073759659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = 22.914953 kcal Electronic energy + Delta-G solvation = -29548.016336 eV Core-core repulsion = 25442.556269 eV Total energy + Delta-G solvation = -4105.460067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.99057 -41.02714 -40.13253 -38.45857 -36.78299 -35.99844 -34.41363 -33.80720 -33.19462 -32.57884 -30.27752 -27.61005 -27.04235 -25.70998 -25.22566 -24.02876 -23.35442 -22.43774 -21.74950 -21.29404 -21.07374 -19.44379 -18.86449 -18.75603 -17.79899 -17.67241 -17.05863 -16.63703 -16.51223 -16.25279 -16.04978 -15.91523 -15.54034 -15.39170 -14.86106 -14.72037 -14.29184 -14.18147 -13.90351 -13.56690 -13.26536 -13.14474 -12.94693 -12.76052 -12.60653 -12.57334 -12.49849 -12.34346 -12.29962 -11.91260 -11.76453 -11.52319 -11.35850 -11.21253 -11.14168 -10.85352 -10.56914 -10.53840 -10.25778 -10.10533 -8.70169 -7.88593 -5.28459 0.05091 0.62586 1.49069 1.53483 1.57696 1.85045 2.11511 2.25600 2.53432 2.78529 2.92909 3.13655 3.19246 3.28976 3.52376 3.78029 3.85603 3.94665 4.02266 4.04319 4.18875 4.30364 4.40438 4.44036 4.56641 4.59326 4.65585 4.70255 4.76712 4.78901 4.82865 4.91288 4.96302 5.09188 5.10746 5.14522 5.21000 5.22063 5.35076 5.38389 5.43955 5.52139 5.69954 6.37715 6.47254 6.54653 7.10434 7.12986 7.16076 7.84886 8.37390 9.17119 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002869 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.976872 B = 9755.818827 C =10500.160915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.033 4.033 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.264 4.264 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.166 4.166 12 C 0.067 3.933 13 O -0.366 6.366 14 C 0.080 3.920 15 H 0.089 0.911 16 C 0.135 3.865 17 N -0.696 5.696 18 C 0.592 3.408 19 O -0.572 6.572 20 C -0.276 4.276 21 C 0.032 3.968 22 O 0.101 5.899 23 N -0.373 5.373 24 C 0.087 3.913 25 C -0.110 4.110 26 C -0.149 4.149 27 C -0.153 4.153 28 C 0.143 3.857 29 H 0.251 0.749 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.411 0.589 39 H 0.273 0.727 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 -8.367 -2.638 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.230 4.230 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.207 4.207 12 C -0.011 4.011 13 O -0.285 6.285 14 C 0.021 3.979 15 H 0.106 0.894 16 C 0.010 3.990 17 N -0.346 5.346 18 C 0.380 3.620 19 O -0.453 6.453 20 C -0.283 4.283 21 C -0.050 4.050 22 O 0.043 5.957 23 N -0.081 5.081 24 C -0.074 4.074 25 C -0.129 4.129 26 C -0.186 4.186 27 C -0.191 4.191 28 C 0.019 3.981 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.288 0.712 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.581 -8.499 -1.982 16.993 hybrid contribution 1.758 1.445 -0.153 2.281 sum -12.823 -7.054 -2.136 14.790 Atomic orbital electron populations 1.69959 1.05684 1.25753 1.54670 1.25414 0.96049 1.00300 1.01235 0.85525 0.77790 0.80338 0.77775 1.20756 1.22019 1.21411 1.19345 0.93657 0.86373 1.39962 0.92068 1.44215 1.34589 1.01881 1.51614 1.20497 0.95953 0.86717 0.94287 1.23497 0.96953 1.00570 0.99664 1.22427 0.93652 1.00388 0.84589 1.87523 1.83262 1.28140 1.29559 1.21752 0.93294 0.84886 0.97962 0.89381 1.21420 0.83176 1.00368 0.94008 1.45549 1.05712 1.70494 1.12864 1.17065 0.82164 0.76497 0.86309 1.90750 1.86448 1.51966 1.16115 1.22170 0.94427 1.16465 0.95249 1.27189 0.88301 0.93435 0.96070 1.84553 1.16151 1.65100 1.29908 1.73599 1.18875 1.21036 0.94542 1.24088 0.88915 0.98776 0.95648 1.20377 0.93890 1.08638 0.90021 1.23107 0.93351 0.97700 1.04487 1.23084 0.99877 0.91995 1.04178 1.20674 0.86285 1.00117 0.91056 0.93944 0.94733 0.95312 0.90412 0.92806 0.89094 0.94264 0.91695 0.92004 0.75232 0.71182 0.85859 0.88360 0.85949 0.86398 0.89007 0.90344 0.95829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.59 9.56 21.65 0.21 -46.39 16 2 C -0.03 -1.69 4.92 84.86 0.42 -1.27 16 3 Si 0.96 42.17 29.60 68.60 2.03 44.20 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.26 -13.41 9.61 84.03 0.81 -12.60 16 8 H 0.06 3.14 7.87 -2.91 -0.02 3.11 16 9 N -0.60 -27.86 2.61 -706.03 -1.84 -29.70 16 10 C 0.15 6.09 5.33 87.75 0.47 6.56 16 11 C -0.17 -5.50 6.75 32.15 0.22 -5.28 16 12 C 0.07 2.15 6.38 72.73 0.46 2.61 16 13 O -0.37 -12.63 9.54 -137.15 -1.31 -13.93 16 14 C 0.08 3.02 1.95 28.71 0.06 3.08 16 15 H 0.09 3.76 5.23 -2.39 -0.01 3.74 16 16 C 0.14 4.67 5.24 86.38 0.45 5.13 16 17 N -0.70 -19.96 5.43 -466.42 -2.53 -22.49 16 18 C 0.59 18.29 7.81 86.66 0.68 18.97 16 19 O -0.57 -21.79 15.81 -4.06 -0.06 -21.86 16 20 C -0.28 -6.94 6.47 -18.74 -0.12 -7.06 16 21 C 0.03 0.53 11.85 67.61 0.80 1.34 16 22 O 0.10 2.03 11.06 77.05 0.85 2.88 16 23 N -0.37 -9.17 11.71 -44.77 -0.52 -9.70 16 24 C 0.09 2.30 7.07 45.16 0.32 2.62 16 25 C -0.11 -2.69 5.90 -11.54 -0.07 -2.76 16 26 C -0.15 -2.76 10.16 30.59 0.31 -2.45 16 27 C -0.15 -3.05 10.23 30.59 0.31 -2.73 16 28 C 0.14 6.28 4.71 83.79 0.39 6.68 16 29 H 0.25 12.72 8.31 -92.71 -0.77 11.95 16 30 H 0.03 1.33 7.99 -2.38 -0.02 1.31 16 31 H 0.03 1.14 7.95 -2.39 -0.02 1.12 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.04 1.47 6.66 -2.39 -0.02 1.45 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.41 9.44 7.51 -92.70 -0.70 8.74 16 39 H 0.27 1.66 7.68 -2.91 -0.02 1.64 16 40 H 0.12 3.38 7.30 -2.39 -0.02 3.36 16 41 H 0.10 1.86 7.97 -2.39 -0.02 1.84 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 3.85 6.02 -2.39 -0.01 3.84 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -63.27 374.80 2.64 -60.63 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.32 Total: 23.53 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.51 Total: 12.82 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.69 Total: -108.27 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.52 Total: -32.91 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -63.27 2.64 -60.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073759659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.542 kcal (2) G-P(sol) polarization free energy of solvation -63.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds